Literature DB >> 23894138

GALANT: a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks.

Esther Camilo1, Luiz A Bovolenta, Marcio L Acencio, José L Rybarczyk-Filho, Mauro A A Castro, José C F Moreira, Ney Lemke.   

Abstract

SUMMARY: Network-level visualization of functional data is a key aspect of both analysis and understanding of biological systems. In a continuing effort to create clear and integrated visualizations that facilitate the gathering of novel biological insights despite the overwhelming complexity of data, we present here the GrAph LANdscape VisualizaTion (GALANT), a Cytoscape plugin that builds functional landscapes onto biological networks. By using GALANT, it is possible to project any type of numerical data onto a network to create a smoothed data map resembling the network layout. As a Cytoscape plugin, GALANT is further improved by the functionalities of Cytoscape, the popular bioinformatics package for biological network visualization and data integration. AVAILABILITY: http://www.lbbc.ibb.unesp.br/galant.

Mesh:

Year:  2013        PMID: 23894138     DOI: 10.1093/bioinformatics/btt377

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  2 in total

1.  Network-Based Identification of Altered Stem Cell Pluripotency and Calcium Signaling Pathways in Metastatic Melanoma.

Authors:  Ben-Hur Neves de Oliveira; Carla Dalmaz; Fares Zeidán-Chuliá
Journal:  Med Sci (Basel)       Date:  2018-03-08

2.  A Systems Biology Approach to Reveal Putative Host-Derived Biomarkers of Periodontitis by Network Topology Characterization of MMP-REDOX/NO and Apoptosis Integrated Pathways.

Authors:  Fares Zeidán-Chuliá; Mervi Gürsoy; Ben-Hur Neves de Oliveira; Vural Özdemir; Eija Könönen; Ulvi K Gürsoy
Journal:  Front Cell Infect Microbiol       Date:  2016-01-11       Impact factor: 5.293

  2 in total

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