Literature DB >> 23893440

Backbone resonance assignments of the 42 kDa enzyme arginine kinase in the transition state analogue form.

Omar Davulcu1, Xiaogang Niu, Lei Brüschweiler-Li, Rafael Brüschweiler, Jack J Skalicky, Michael S Chapman.   

Abstract

Nearly complete backbone resonance assignments for the 357 residue, 42 kDa enzyme arginine kinase in a transition state analogue (TSA) complex are presented. The TSA is a quaternary complex of arginine kinase, MgADP, arginine, and nitrate. About 93% (320 of 344) of the non-proline backbone amides were assigned using an enzyme enriched with (2)H, (13)C, and (15)N in combination with three enzyme samples prepared with a single (15)N-labeled amino acid (K, L, and R). The amide assignments will provide the foundation for investigating the dynamics of arginine kinase when in a TSA complex.

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Year:  2013        PMID: 23893440      PMCID: PMC3906217          DOI: 10.1007/s12104-013-9512-4

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  10 in total

1.  The putative catalytic bases have, at most, an accessory role in the mechanism of arginine kinase.

Authors:  Pamela S Pruett; Arezki Azzi; Shawn A Clark; Mohammad S Yousef; James L Gattis; Thayumanasamy Somasundaram; W Ross Ellington; Michael S Chapman
Journal:  J Biol Chem       Date:  2003-05-05       Impact factor: 5.157

2.  Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.

Authors:  Xiaogang Niu; Lei Bruschweiler-Li; Omar Davulcu; Jack J Skalicky; Rafael Brüschweiler; Michael S Chapman
Journal:  J Mol Biol       Date:  2010-11-12       Impact factor: 5.469

3.  Transition state structure of arginine kinase: implications for catalysis of bimolecular reactions.

Authors:  G Zhou; T Somasundaram; E Blanc; G Parthasarathy; W R Ellington; M S Chapman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

4.  Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy.

Authors:  J L Markley; A Bax; Y Arata; C W Hilbers; R Kaptein; B D Sykes; P E Wright; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-07       Impact factor: 2.835

5.  Rate-limiting domain and loop motions in arginine kinase.

Authors:  Omar Davulcu; Jack J Skalicky; Michael S Chapman
Journal:  Biochemistry       Date:  2011-04-22       Impact factor: 3.162

Review 6.  Evolution and physiological roles of phosphagen systems.

Authors:  W R Ellington
Journal:  Annu Rev Physiol       Date:  2001       Impact factor: 19.318

7.  Main chain 1H, 13C, and 15N resonance assignments of the 42-kDa enzyme arginine kinase.

Authors:  Omar Davulcu; Shawn A Clark; Michael S Chapman; Jack J Skalicky
Journal:  J Biomol NMR       Date:  2005-06       Impact factor: 2.835

8.  Intrinsic domain and loop dynamics commensurate with catalytic turnover in an induced-fit enzyme.

Authors:  Omar Davulcu; Peter F Flynn; Michael S Chapman; Jack J Skalicky
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

9.  Induced fit in guanidino kinases--comparison of substrate-free and transition state analog structures of arginine kinase.

Authors:  Mohammad S Yousef; Shawn A Clark; Pamela K Pruett; Thayumanasamy Somasundaram; W Ross Ellington; Michael S Chapman
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

10.  The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data.

Authors:  D S Wishart; B D Sykes
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

  10 in total
  3 in total

1.  The Michaelis Complex of Arginine Kinase Samples the Transition State at a Frequency That Matches the Catalytic Rate.

Authors:  Yu Peng; Alexandar L Hansen; Lei Bruschweiler-Li; Omar Davulcu; Jack J Skalicky; Michael S Chapman; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2017-03-27       Impact factor: 15.419

2.  Elevated μs-ms timescale backbone dynamics in the transition state analog form of arginine kinase.

Authors:  Omar Davulcu; Yu Peng; Rafael Brüschweiler; Jack J Skalicky; Michael S Chapman
Journal:  J Struct Biol       Date:  2017-05-08       Impact factor: 2.867

3.  Parsimony in Protein Conformational Change.

Authors:  Brynmor K Chapman; Omar Davulcu; Jack J Skalicky; Rafael P Brüschweiler; Michael S Chapman
Journal:  Structure       Date:  2015-06-18       Impact factor: 5.006

  3 in total

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