Literature DB >> 23880534

The promise and challenges of blood spot methylomics.

Sreeram V Ramagopalan1, Vardhman K Rakyan.   

Abstract

Epigenome-wide association studies (EWAS) are being extensively performed to identify epigenetic variants associated to complex diseases. However, EWAS may identify variants that are disease-induced rather than disease-causal. Recent studies have highlighted the use of Guthrie cards to profile the methylome at birth, permitting researchers to find epigenetic variants present in patients before they are diagnosed with clinical disease, with the implicit suggestion that these variants are more likely to be disease causal. The use of Guthrie cards for research purposes throws up a number of ethical issues. We review here the promises and pitfalls of Guthrie cards for disease research.

Entities:  

Keywords:  biomarker; blood spot; epigenetics; epigenome wide association study; longitudinal studies

Mesh:

Year:  2013        PMID: 23880534      PMCID: PMC3883779          DOI: 10.4161/epi.25357

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  17 in total

1.  A SIMPLE PHENYLALANINE METHOD FOR DETECTING PHENYLKETONURIA IN LARGE POPULATIONS OF NEWBORN INFANTS.

Authors:  R GUTHRIE; A SUSI
Journal:  Pediatrics       Date:  1963-09       Impact factor: 7.124

2.  The utility of neonatal dried blood spots for the assessment of neonatal vitamin D status.

Authors:  Darryl W Eyles; Ruth Morley; Cameron Anderson; Pauline Ko; Thomas Burne; Michael Permezel; Preben B Mortensen; Bent Nørgaard-Pedersen; David M Hougaard; John J McGrath
Journal:  Paediatr Perinat Epidemiol       Date:  2010-05       Impact factor: 3.980

3.  Acquiring genome-wide gene expression profiles in Guthrie card blood spots using microarrays.

Authors:  Sok Kean Khoo; Karl Dykema; Naga Manjari Vadlapatla; David LaHaie; Saul Valle; David Satterthwaite; Sara Angeline Ramirez; Janell Alee Carruthers; Peterson Todd Haak; James Howard Resau
Journal:  Pathol Int       Date:  2011-01       Impact factor: 2.534

Review 4.  Newborn screening cards: a legal quagmire.

Authors:  Diana M Bowman; David M Studdert
Journal:  Med J Aust       Date:  2011-03-21       Impact factor: 7.738

5.  Newborn screening: a spot of trouble.

Authors:  Mary Carmichael
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

Review 6.  Retention and research use of residual newborn screening bloodspots.

Authors:  Jeffrey R Botkin; Aaron J Goldenberg; Erin Rothwell; Rebecca A Anderson; Michelle Huckaby Lewis
Journal:  Pediatrics       Date:  2012-12-03       Impact factor: 7.124

7.  Storage policies and use of the Danish Newborn Screening Biobank.

Authors:  B Nørgaard-Pedersen; D M Hougaard
Journal:  J Inherit Metab Dis       Date:  2007-07-12       Impact factor: 4.982

8.  Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.

Authors:  Yun Liu; Martin J Aryee; Leonid Padyukov; M Daniele Fallin; Espen Hesselberg; Arni Runarsson; Lovisa Reinius; Nathalie Acevedo; Margaret Taub; Marcus Ronninger; Klementy Shchetynsky; Annika Scheynius; Juha Kere; Lars Alfredsson; Lars Klareskog; Tomas J Ekström; Andrew P Feinberg
Journal:  Nat Biotechnol       Date:  2013-01-20       Impact factor: 54.908

9.  High quality methylome-wide investigations through next-generation sequencing of DNA from a single archived dry blood spot.

Authors:  Karolina A Aberg; Lin Y Xie; Srilaxmi Nerella; William E Copeland; E Jane Costello; Edwin J C G van den Oord
Journal:  Epigenetics       Date:  2013-04-18       Impact factor: 4.528

10.  Methylomic analysis of monozygotic twins discordant for autism spectrum disorder and related behavioural traits.

Authors:  C C Y Wong; E L Meaburn; A Ronald; T S Price; A R Jeffries; L C Schalkwyk; R Plomin; J Mill
Journal:  Mol Psychiatry       Date:  2013-04-23       Impact factor: 15.992

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  4 in total

1.  DNA Methylome Profiling on the Infinium HumanMethylation450 Array from Limiting Quantities of Genomic DNA from a Single, Small Archived Bloodspot.

Authors:  Kripa Asrani; Gary M Shaw; Jasper Rine; Nicholas J Marini
Journal:  Genet Test Mol Biomarkers       Date:  2017-06-13

2.  Assessment of dried blood spots for DNA methylation profiling.

Authors:  David J Porteous; Kathryn L Evans; Rosie M Walker; Louise MacGillivray; Sarah McCafferty; Nicola Wrobel; Lee Murphy; Shona M Kerr; Stewart W Morris; Archie Campbell; Andrew M McIntosh
Journal:  Wellcome Open Res       Date:  2019-03-06

3.  The utility of post-test newborn blood spot screening cards for epigenetic association analyses: association between HIF3A methylation and birth weight-for-gestational age.

Authors:  Tay Zar Kyaw; Seiji Yamaguchi; Chihiro Imai; Marina Uematsu; Noriko Sato
Journal:  J Hum Genet       Date:  2019-05-29       Impact factor: 3.172

4.  Feasibility and ethics of using data from the Scottish newborn blood spot archive for research.

Authors:  Sarah Cunningham-Burley; Daniel L McCartney; Archie Campbell; Robin Flaig; Clare E L Orange; Carol Porteous; Mhairi Aitken; Ciaran Mulholland; Sara Davidson; Selena M McCafferty; Lee Murphy; Nicola Wrobel; Sarah McCafferty; Karen Wallace; David StClair; Shona Kerr; Caroline Hayward; Andrew M McIntosh; Cathie Sudlow; Riccardo E Marioni; Jill Pell; Zosia Miedzybrodzka; David J Porteous
Journal:  Commun Med (Lond)       Date:  2022-10-06
  4 in total

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