Literature DB >> 23879667

Conclusive evidence of the reconstituted hexasome proven by native mass spectrometry.

Nanako Azegami1, Kazumi Saikusa, Yasuto Todokoro, Aritaka Nagadoi, Hitoshi Kurumizaka, Yoshifumi Nishimura, Satoko Akashi.   

Abstract

It has been suggested that the hexasome, in which one of the H2A/H2B dimers is depleted from the canonical nucleosome core particle (NCP), is an essential intermediate during NCP assembly and disassembly, but little structural evidence of this exists. In this study, reconstituted products in a conventional NCP preparation were analyzed by native electrospray ionization mass spectrometry, and it was found that the hexasome, which migrated in a manner almost identical to that of the octasome NCP in native polyacrylamide gel electrophoresis, was produced simultaneously with the octasome NCP. This result might contribute to understanding the assembly and disassembly mechanism of NCPs.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23879667     DOI: 10.1021/bi4005655

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Dynamics of nucleosome assembly and effects of DNA methylation.

Authors:  Ju Yeon Lee; Jaehyoun Lee; Hongjun Yue; Tae-Hee Lee
Journal:  J Biol Chem       Date:  2014-12-29       Impact factor: 5.157

2.  Transcription and Remodeling Produce Asymmetrically Unwrapped Nucleosomal Intermediates.

Authors:  Srinivas Ramachandran; Kami Ahmad; Steven Henikoff
Journal:  Mol Cell       Date:  2017-12-07       Impact factor: 17.970

Review 3.  Native Mass Spectrometry of Membrane Proteins.

Authors:  James E Keener; Guozhi Zhang; Michael T Marty
Journal:  Anal Chem       Date:  2020-10-28       Impact factor: 6.986

4.  Nucleosome composition regulates the histone H3 tail conformational ensemble and accessibility.

Authors:  Emma A Morrison; Lokesh Baweja; Michael G Poirier; Jeff Wereszczynski; Catherine A Musselman
Journal:  Nucleic Acids Res       Date:  2021-05-07       Impact factor: 19.160

5.  DNA sequence influences hexasome orientation to regulate DNA accessibility.

Authors:  Matthew Brehove; Elan Shatoff; Benjamin T Donovan; Caroline M Jipa; Ralf Bundschuh; Michael G Poirier
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

6.  Structural visualization of key steps in nucleosome reorganization by human FACT.

Authors:  Kouta Mayanagi; Kazumi Saikusa; Naoyuki Miyazaki; Satoko Akashi; Kenji Iwasaki; Yoshifumi Nishimura; Kosuke Morikawa; Yasuo Tsunaka
Journal:  Sci Rep       Date:  2019-07-15       Impact factor: 4.379

7.  Decoding the protein composition of whole nucleosomes with Nuc-MS.

Authors:  Luis F Schachner; Kevin Jooß; Marc A Morgan; Andrea Piunti; Matthew J Meiners; Jared O Kafader; Alexander S Lee; Marta Iwanaszko; Marcus A Cheek; Jonathan M Burg; Sarah A Howard; Michael-Christopher Keogh; Ali Shilatifard; Neil L Kelleher
Journal:  Nat Methods       Date:  2021-02-15       Impact factor: 28.547

8.  Generation of a synthetic GlcNAcylated nucleosome reveals regulation of stability by H2A-Thr101 GlcNAcylation.

Authors:  Lukas Lercher; Ritu Raj; Nisha A Patel; Joshua Price; Shabaz Mohammed; Carol V Robinson; Christopher J Schofield; Benjamin G Davis
Journal:  Nat Commun       Date:  2015-08-25       Impact factor: 14.919

9.  Parallel mapping with site-directed hydroxyl radicals and micrococcal nuclease reveals structural features of positioned nucleosomes in vivo.

Authors:  Tomohiro Fuse; Koji Katsumata; Koya Morohoshi; Yukio Mukai; Yuichi Ichikawa; Hitoshi Kurumizaka; Akio Yanagida; Takeshi Urano; Hiroaki Kato; Mitsuhiro Shimizu
Journal:  PLoS One       Date:  2017-10-26       Impact factor: 3.240

10.  Rapid and Definitive Analysis of In Vitro DNA Methylation by Nano-electrospray Ionization Mass Spectrometry.

Authors:  Hiroshi Ushijima; Rena Maekawa; Eri Igarashi; Satoko Akashi
Journal:  J Am Soc Mass Spectrom       Date:  2019-09-16       Impact factor: 3.109

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.