Literature DB >> 23875832

X-ray crystal structure of rac-[Ru(phen)2dppz]2+ with d(ATGCAT)2 shows enantiomer orientations and water ordering.

James P Hall1, Daniel Cook, Sara Ruiz Morte, Patrick McIntyre, Katrin Buchner, Hanna Beer, David J Cardin, John A Brazier, Graeme Winter, John M Kelly, Christine J Cardin.   

Abstract

We report an atomic resolution X-ray crystal structure containing both enantiomers of rac-[Ru(phen)2dppz](2+) with the d(ATGCAT)2 DNA duplex (phen = phenanthroline; dppz = dipyridophenazine). The first example of any enantiomeric pair crystallized with a DNA duplex shows different orientations of the Λ and Δ binding sites, separated by a clearly defined structured water monolayer. Job plots show that the same species is present in solution. Each enantiomer is bound at a TG/CA step and shows intercalation from the minor groove. One water molecule is directly located on one phenazine N atom in the Δ-enantiomer only.

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Year:  2013        PMID: 23875832     DOI: 10.1021/ja403590e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Photoinduced interactions of two dirhodium complexes with d(GTCGAC)2 probed by 2D NOESY.

Authors:  Alycia M Palmer; Jessica D Knoll; Claudia Turro
Journal:  Dalton Trans       Date:  2015-02-28       Impact factor: 4.390

2.  Dissecting the Dynamic Pathways of Stereoselective DNA Threading Intercalation.

Authors:  Ali A Almaqwashi; Johanna Andersson; Per Lincoln; Ioulia Rouzina; Fredrik Westerlund; Mark C Williams
Journal:  Biophys J       Date:  2016-03-29       Impact factor: 4.033

3.  Strong DNA deformation required for extremely slow DNA threading intercalation by a binuclear ruthenium complex.

Authors:  Ali A Almaqwashi; Thayaparan Paramanathan; Per Lincoln; Ioulia Rouzina; Fredrik Westerlund; Mark C Williams
Journal:  Nucleic Acids Res       Date:  2014-09-22       Impact factor: 16.971

4.  Reversal of a Single Base-Pair Step Controls Guanine Photo-Oxidation by an Intercalating Ruthenium(II) Dipyridophenazine Complex.

Authors:  Páraic M Keane; Fergus E Poynton; James P Hall; Igor V Sazanovich; Michael Towrie; Thorfinnur Gunnlaugsson; Susan J Quinn; Christine J Cardin; John M Kelly
Journal:  Angew Chem Int Ed Engl       Date:  2015-06-11       Impact factor: 15.336

5.  Delta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes.

Authors:  James P Hall; Páraic M Keane; Hanna Beer; Katrin Buchner; Graeme Winter; Thomas L Sorensen; David J Cardin; John A Brazier; Christine J Cardin
Journal:  Nucleic Acids Res       Date:  2016-09-05       Impact factor: 16.971

Review 6.  Transition Metal Intercalators as Anticancer Agents-Recent Advances.

Authors:  Krishant M Deo; Benjamin J Pages; Dale L Ang; Christopher P Gordon; Janice R Aldrich-Wright
Journal:  Int J Mol Sci       Date:  2016-10-31       Impact factor: 5.923

7.  Photochemically active DNA-intercalating ruthenium and related complexes - insights by combining crystallography and transient spectroscopy.

Authors:  Christine J Cardin; John M Kelly; Susan J Quinn
Journal:  Chem Sci       Date:  2017-04-12       Impact factor: 9.825

8.  Guanine Can Direct Binding Specificity of Ru-dipyridophenazine (dppz) Complexes to DNA through Steric Effects.

Authors:  James P Hall; Sarah P Gurung; Jessica Henle; Patrick Poidl; Johanna Andersson; Per Lincoln; Graeme Winter; Thomas Sorensen; David J Cardin; John A Brazier; Christine J Cardin
Journal:  Chemistry       Date:  2017-02-06       Impact factor: 5.236

Review 9.  Ruthenium polypyridine complexes combined with oligonucleotides for bioanalysis: a review.

Authors:  Shuyu Zhang; Yubin Ding; Hui Wei
Journal:  Molecules       Date:  2014-08-11       Impact factor: 4.411

10.  Direct observation by time-resolved infrared spectroscopy of the bright and the dark excited states of the [Ru(phen)2(dppz)]2+ light-switch compound in solution and when bound to DNA.

Authors:  Fergus E Poynton; James P Hall; Páraic M Keane; Christine Schwarz; Igor V Sazanovich; Michael Towrie; Thorfinnur Gunnlaugsson; Christine J Cardin; David J Cardin; Susan J Quinn; Conor Long; John M Kelly
Journal:  Chem Sci       Date:  2016-01-27       Impact factor: 9.825

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