| Literature DB >> 23875540 |
Izumi Naka, Jun Ohashi, Ryosuke Kimura, Tsukasa Inaoka, Yasuhiro Matsumura.
Abstract
BACKGROUND: Our previous study demonstrated that the A-allele of the single nucleotide polymorphism (SNP) rs34623097 located in the upstream region of the β2 adrenergic receptor gene (ADRB2) is significantly associated with risk for obesity in Oceanic populations.Entities:
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Year: 2013 PMID: 23875540 PMCID: PMC3728115 DOI: 10.1186/1476-511X-12-110
Source DB: PubMed Journal: Lipids Health Dis ISSN: 1476-511X Impact factor: 3.876
Clinical characteristics of subjects
| | (n = 128) | (n = 40) | (n = 88) |
| Age | 44 (33–53) | 49 (36–55) | 42 (32–51) |
| Height (cm) | 167.4 (162.3-170.1) | 172.5 (170.5-177.3) | 164.2 (160.5-168.1) |
| Weight (kg) | 96.9 (85.7-108.4) | 100.1 (90.0-109.2) | 96.3 (84.5-107.2) |
| BMI (kg/m2) | 35.3 (31.2-39.3) | 32.4 (29.9-36.5) | 35.9 (31.5-40.1) |
| Total cholesterol (mg/dL) | 199 (173–224) | 203 (176–230) | 197 (170–218) |
| HDL cholesterol (mg/dL) | 45 (40–52) | 42 (38–49) | 47 (42–52) |
| LDL cholesterol (mg/dL) | 128 (109–147) | 125 (114–154) | 129 (107–146) |
| Triglyceride (mg/dL) | 107 (73–155) | 152 (104–216) | 99 (62–129) |
Data are presented as median (interquartile range); BMI Body Mass Index, HDL High Density Lipoprotein, LDL Low Density Lipoprotein.
Association of age, sex and BMI with lipid traits
| Age (years) | 1.1 | 0.33 | 0.0031 | 0.063 | 0.96 | 0.77 | 0.29 | 0.88 | 0.76 | 0.25 | ||
| Sex (Male = 0, Female = 1) | −3.4 | 8.6 | 0.70 | 5.6 | 1.6 | 5.9 | 7.6 | 0.44 | −94 | 20 | ||
| BMI (kg/m2) | 0.42 | 0.65 | 0.52 | −0.47 | 0.12 | 0.60 | 0.57 | 0.30 | 3.4 | 1.5 | ||
A multiple regression analysis was performed to examine the association of age, sex, and BMI with each lipid trait; BMI Body Mass Index, HDL High Density Lipoprotein, LDL Low Density Lipoprotein.
Figure 1LD structure of SNPs. A pairwise r2 value is shown in each square. Darker shading indicates higher r2 values and black shading indicates an r2 of 1.
Association of each ADRB2 polymorphism with lipid traits
| rs17778257 | T | 0.39 | 5.17 | 5.52 | 0.351 | 0.110 | 1.06 | 0.918 | 4.34 | 4.83 | 0.371 | 8.20 | 12.8 | 0.523 |
| rs34623097 | A | 0.04 | 13.7 | 14.6 | 0.350 | −2.88 | 2.78 | 0.302 | 3.60 | 12.8 | 0.779 | 70.1 | 33.3 | |
| rs2895795 | A | 0.52 | −8.09 | 5.42 | 0.138 | −0.0671 | 1.04 | 0.949 | −6.18 | 4.75 | 0.196 | −19.1 | 12.5 | 0.130 |
| rs2053044 | A | 0.09 | 10.0 | 9.82 | 0.312 | −0.128 | 1.88 | 0.946 | 6.35 | 8.61 | 0.462 | 36.3 | 22.6 | 0.111 |
| rs11959427a | T | 0.95 | −8.00 | 13.5 | 0.557 | 1.70 | 2.60 | 0.503 | −3.50 | 11.9 | 0.768 | −36.1 | 31.2 | 0.250 |
| rs1042711 (Arg19Cys) | T (Cys) | 0.95 | −7.97 | 13.5 | 0.557 | 1.74 | 2.58 | 0.503 | −3.51 | 11.9 | 0.768 | −36.1 | 31.2 | 0.250 |
| rs1042713 (Gly16Arg)a | A (Arg) | 0.42 | 5.70 | 5.30 | 0.285 | 0.400 | 1.00 | 0.720 | 4.50 | 4.70 | 0.344 | 13.9 | 12.5 | 0.267 |
| rs1042714 (Glu27Gln)a | C (Gln) | 0.96 | −8.50 | 14.6 | 0.563 | 2.10 | 2.80 | 0.443 | −5.20 | 12.8 | 0.683 | −37.9 | 33.7 | 0.263 |
| rs1042719 | C | 0.43 | 4.42 | 5.38 | 0.413 | −0.102 | 1.03 | 0.921 | 2.30 | 4.72 | 0.627 | 23.7 | 12.3 | 0.057 |
| rs1042720 | A | 0.61 | −2.47 | 5.48 | 0.652 | 0.616 | 1.04 | 0.556 | 0.05 | 4.80 | 0.992 | −23.8 | 12.5 | 0.059 |
A multiple regression analysis adjusted for age, sex, and BMI was performed to examine the association of each polymorphism with each lipid trait; BMI Body Mass Index, HDL High Density Lipoprotein, LDL Low Density Lipoprotein.
a The genotypes of subjects whose genotypes had not been determined by a molecular biology-based technique were imputed by using the MACH software.
Figure 2Regional association plot. The genotypes of SNPs around the ADRB2 gene in Tongan subjects were imputed by the MACH software by using the genotype data of HapMap JPT and CHB samples as the reference panel. The association P-values for 10 genotyped and 7 imputed SNPs are plotted as diamonds and circles, respectively. The r2 between the SNP and rs34623097 is colored as a scale from low (blue) to high (red). In the genomic region, there is no protein-coding gene other than ADRB2.