Literature DB >> 23874137

Distribution of Particles in the Z-axis of Tissue Sections: Relevance for Counting Methods.

Christopher S von Bartheld1.   

Abstract

The distribution of particles in the z-axis of thick tissue sections has gained considerable attention, primarily because of implications for the accuracy of modern stereological counting methods. Three major types of artifacts can affect these sections: loss of particles from the surfaces of tissue sections (lost caps), homogeneous collapse in the z-axis, and differential deformation in the z-axis. Initially it was assumed that thick sections were not compromised by differential shrinkage or compression (differential uniform deformation). Studies in the last decade showed that such artifacts are common and that they depend on embedding media and sectioning devices. Paraffin, glycolmethacrylate and vibratome sections are affected by this artifact, but not celloidin sections or cryostat-derived cryosections. Differential distribution of particles in the z-axis is likely due to compression of the surface areas (margins) during sectioning, resulting in differential particle densities in the core and margin of tissue sections. This deformation of tissue sections can be rapidly assessed by measuring the position of particles in the z-axis. The analysis is complicated by potential secondary effects on section surfaces through loss of particles, the so-called "lost caps" phenomenon. Secondary effects necessitate the use of guard spaces, while their use in case of primary effects (compression due to sectioning) would enhance the artifact's impact on bias. Symmetric versus asymmetric patterns of z-axis distortion can give clues to distinguish primary and secondary effects. Studies that use the optical disector need to take these parameters into account to minimize biases.

Entities:  

Keywords:  Stereology; bias; cell count; histology; lost caps; morphology; optical disector; particle counting; sampling

Year:  2012        PMID: 23874137      PMCID: PMC3713707     

Source DB:  PubMed          Journal:  Neuroquantology        ISSN: 1303-5150


  40 in total

1.  Pronounced loss of cell nuclei and anisotropic deformation of thick sections.

Authors:  B B Andersen; H J Gundersen
Journal:  J Microsc       Date:  1999-10       Impact factor: 1.758

Review 2.  Stereological methods for estimating the total number of neurons and synapses: issues of precision and bias.

Authors:  M J West
Journal:  Trends Neurosci       Date:  1999-02       Impact factor: 13.837

3.  Comparison of 2-D and 3-D counting: the need for calibration and common sense.

Authors:  C S von Bartheld
Journal:  Trends Neurosci       Date:  2001-09       Impact factor: 13.837

4.  How inaccurate is the Abercrombie correction factor for cell counts?

Authors:  P G Clarke
Journal:  Trends Neurosci       Date:  1992-06       Impact factor: 13.837

Review 5.  Trust, but verify: the necessity of empirical verification in quantitative neurobiology.

Authors:  Paul B Farel
Journal:  Anat Rec       Date:  2002-06-15

6.  Two distinct events, section compression and loss of particles ("lost caps"), contribute to z-axis distortion and bias in optical disector counting.

Authors:  Larisa M Baryshnikova; Oliver Von Bohlen Und Halbach; Suleyman Kaplan; Christopher S Von Bartheld
Journal:  Microsc Res Tech       Date:  2006-09       Impact factor: 2.769

7.  Counting cells in sectioned material: a suite of techniques, tools, and tips.

Authors:  Robert W Williams; Christopher S von Bartheld; Glenn D Rosen
Journal:  Curr Protoc Neurosci       Date:  2003-11

8.  Analysis of differential shrinkage in frozen brain sections and its implications for the use of guard zones in stereology.

Authors:  C N Carlo; C F Stevens
Journal:  J Comp Neurol       Date:  2011-10-01       Impact factor: 3.215

9.  Lost caps in histological counting methods.

Authors:  J C Hedreen
Journal:  Anat Rec       Date:  1998-03

10.  Reliability and validity of the physical disector method for estimating neuron number.

Authors:  G J Popken; P B Farel
Journal:  J Neurobiol       Date:  1996-10
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  17 in total

1.  Sampling Strategies and Processing of Biobank Tissue Samples from Porcine Biomedical Models.

Authors:  Andreas Blutke; Rüdiger Wanke
Journal:  J Vis Exp       Date:  2018-03-06       Impact factor: 1.355

Review 2.  Myths and truths about the cellular composition of the human brain: A review of influential concepts.

Authors:  Christopher S von Bartheld
Journal:  J Chem Neuroanat       Date:  2017-09-02       Impact factor: 3.052

3.  Quantification of neuronal density across cortical depth using automated 3D analysis of confocal image stacks.

Authors:  Jenna G Kelly; Michael J Hawken
Journal:  Brain Struct Funct       Date:  2017-02-27       Impact factor: 3.270

4.  Validation of the isotropic fractionator: comparison with unbiased stereology and DNA extraction for quantification of glial cells.

Authors:  Jami Bahney; Christopher S von Bartheld
Journal:  J Neurosci Methods       Date:  2013-11-12       Impact factor: 2.390

5.  Mitigating Effect of Resveratrol on the Structural Changes of Mice Liver and Kidney Induced by Cadmium; A Stereological Study.

Authors:  Ali Rafati; Leila Hoseini; Ali Babai; Ali Noorafshan; Hossein Haghbin; Saied Karbalay-Doust
Journal:  Prev Nutr Food Sci       Date:  2015-12-31

6.  Calibration of the stereological estimation of the number of myelinated axons in the rat sciatic nerve: a multicenter study.

Authors:  S Kaplan; S Geuna; G Ronchi; M B Ulkay; C S von Bartheld
Journal:  J Neurosci Methods       Date:  2010-01-12       Impact factor: 2.390

7.  The Cellular Composition and Glia-Neuron Ratio in the Spinal Cord of a Human and a Nonhuman Primate: Comparison With Other Species and Brain Regions.

Authors:  Jami Bahney; Christopher S von Bartheld
Journal:  Anat Rec (Hoboken)       Date:  2017-12-01       Impact factor: 2.064

Review 8.  A concise review of optical, physical and isotropic fractionator techniques in neuroscience studies, including recent developments.

Authors:  Ömür Gülsüm Deniz; Gamze Altun; Arife Ahsen Kaplan; Kiymet Kübra Yurt; Christopher S von Bartheld; Suleyman Kaplan
Journal:  J Neurosci Methods       Date:  2018-07-23       Impact factor: 2.390

9.  Stereological study of the effects of maternal diabetes on cerebellar cortex development in rat.

Authors:  Javad Hami; Saeed Vafaei-Nezhad; Kazem Ghaemi; Akram Sadeghi; Ghasem Ivar; Fatemeh Shojae; Mehran Hosseini
Journal:  Metab Brain Dis       Date:  2016-02-03       Impact factor: 3.584

10.  Primary olfactory cortex in autism and epilepsy: increased glial cells in autism.

Authors:  David A Menassa; Carolyn Sloan; Steven A Chance
Journal:  Brain Pathol       Date:  2016-08-15       Impact factor: 6.508

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