Literature DB >> 23873050

Forecasting peaks of seasonal influenza epidemics.

Elaine Nsoesie1, Madhav Mararthe, John Brownstein.   

Abstract

We present a framework for near real-time forecast of influenza epidemics using a simulation optimization approach. The method combines an individual-based model and a simple root finding optimization method for parameter estimation and forecasting. In this study, retrospective forecasts were generated for seasonal influenza epidemics using web-based estimates of influenza activity from Google Flu Trends for 2004-2005, 2007-2008 and 2012-2013 flu seasons. In some cases, the peak could be forecasted 5-6 weeks ahead. This study adds to existing resources for influenza forecasting and the proposed method can be used in conjunction with other approaches in an ensemble framework.

Entities:  

Year:  2013        PMID: 23873050      PMCID: PMC3712489          DOI: 10.1371/currents.outbreaks.bb1e879a23137022ea79a8c508b030bc

Source DB:  PubMed          Journal:  PLoS Curr        ISSN: 2157-3999


  24 in total

1.  Modelling disease outbreaks in realistic urban social networks.

Authors:  Stephen Eubank; Hasan Guclu; V S Anil Kumar; Madhav V Marathe; Aravind Srinivasan; Zoltán Toroczkai; Nan Wang
Journal:  Nature       Date:  2004-05-13       Impact factor: 49.962

2.  A statistical model for hospital admissions caused by seasonal diseases.

Authors:  David Moriña; Pedro Puig; José Ríos; Anna Vilella; Antoni Trilla
Journal:  Stat Med       Date:  2011-08-17       Impact factor: 2.373

3.  Forecasting seasonal outbreaks of influenza.

Authors:  Jeffrey Shaman; Alicia Karspeck
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-26       Impact factor: 11.205

4.  Detail in network models of epidemiology: are we there yet?

Authors:  Stephen Eubank; Christopher Barrett; Richard Beckman; Keith Bisset; Lisa Durbeck; Christopher Kuhlman; Bryan Lewis; Achla Marathe; Madhav Marathe; Paula Stretz
Journal:  J Biol Dyn       Date:  2010-09       Impact factor: 2.179

5.  Absolute humidity and the seasonal onset of influenza in the continental United States.

Authors:  Jeffrey Shaman; Virginia E Pitzer; Cécile Viboud; Bryan T Grenfell; Marc Lipsitch
Journal:  PLoS Biol       Date:  2010-02-23       Impact factor: 8.029

6.  Detecting influenza epidemics using search engine query data.

Authors:  Jeremy Ginsberg; Matthew H Mohebbi; Rajan S Patel; Lynnette Brammer; Mark S Smolinski; Larry Brilliant
Journal:  Nature       Date:  2009-02-19       Impact factor: 49.962

7.  Real-time numerical forecast of global epidemic spreading: case study of 2009 A/H1N1pdm.

Authors:  Michele Tizzoni; Paolo Bajardi; Chiara Poletto; José J Ramasco; Duygu Balcan; Bruno Gonçalves; Nicola Perra; Vittoria Colizza; Alessandro Vespignani
Journal:  BMC Med       Date:  2012-12-13       Impact factor: 8.775

8.  Comparing large-scale computational approaches to epidemic modeling: agent-based versus structured metapopulation models.

Authors:  Marco Ajelli; Bruno Gonçalves; Duygu Balcan; Vittoria Colizza; Hao Hu; José J Ramasco; Stefano Merler; Alessandro Vespignani
Journal:  BMC Infect Dis       Date:  2010-06-29       Impact factor: 3.090

9.  Essential epidemiological mechanisms underpinning the transmission dynamics of seasonal influenza.

Authors:  James Truscott; Christophe Fraser; Simon Cauchemez; Aronrag Meeyai; Wes Hinsley; Christl A Donnelly; Azra Ghani; Neil Ferguson
Journal:  J R Soc Interface       Date:  2011-06-29       Impact factor: 4.118

10.  Different epidemic curves for severe acute respiratory syndrome reveal similar impacts of control measures.

Authors:  Jacco Wallinga; Peter Teunis
Journal:  Am J Epidemiol       Date:  2004-09-15       Impact factor: 4.897

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  28 in total

1.  Accurate estimation of influenza epidemics using Google search data via ARGO.

Authors:  Shihao Yang; Mauricio Santillana; S C Kou
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

2.  Twitter improves influenza forecasting.

Authors:  Michael J Paul; Mark Dredze; David Broniatowski
Journal:  PLoS Curr       Date:  2014-10-28

Review 3.  Infectious disease modeling methods as tools for informing response to novel influenza viruses of unknown pandemic potential.

Authors:  Manoj Gambhir; Catherine Bozio; Justin J O'Hagan; Amra Uzicanin; Lucinda E Johnson; Matthew Biggerstaff; David L Swerdlow
Journal:  Clin Infect Dis       Date:  2015-05-01       Impact factor: 9.079

4.  Superensemble forecasts of dengue outbreaks.

Authors:  Teresa K Yamana; Sasikiran Kandula; Jeffrey Shaman
Journal:  J R Soc Interface       Date:  2016-10       Impact factor: 4.118

5.  An operational epidemiological model for calibrating agent-based simulations of pandemic influenza outbreaks.

Authors:  D Prieto; T K Das
Journal:  Health Care Manag Sci       Date:  2014-04-08

6.  EpiCaster: An Integrated Web Application For Situation Assessment and Forecasting of Global Epidemics.

Authors:  Suruchi Deodhar; Keith Bisset; Jiangzhuo Chen; Chris Barrett; Mandy Wilson; Madhav Marathe
Journal:  ACM BCB       Date:  2015-09

7.  The design and evaluation of a Bayesian system for detecting and characterizing outbreaks of influenza.

Authors:  Nicholas E Millett; John M Aronis; Michael M Wagner; Fuchiang Tsui; Ye Ye; Jeffrey P Ferraro; Peter J Haug; Per H Gesteland; Gregory F Cooper
Journal:  Online J Public Health Inform       Date:  2019-09-19

8.  Forecasting and planning during a pandemic: COVID-19 growth rates, supply chain disruptions, and governmental decisions.

Authors:  Konstantinos Nikolopoulos; Sushil Punia; Andreas Schäfers; Christos Tsinopoulos; Chrysovalantis Vasilakis
Journal:  Eur J Oper Res       Date:  2020-08-08       Impact factor: 5.334

9.  Forecasting seasonal influenza with a state-space SIR model.

Authors:  Dave Osthus; Kyle S Hickmann; Petruţa C Caragea; Dave Higdon; Sara Y Del Valle
Journal:  Ann Appl Stat       Date:  2017-04-08       Impact factor: 2.083

10.  Flexible Modeling of Epidemics with an Empirical Bayes Framework.

Authors:  Logan C Brooks; David C Farrow; Sangwon Hyun; Ryan J Tibshirani; Roni Rosenfeld
Journal:  PLoS Comput Biol       Date:  2015-08-28       Impact factor: 4.475

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