Literature DB >> 23865724

Dynamics and thermodynamics of crystalline polymorphs. 2. β-Glycine, analysis of variable-temperature atomic displacement parameters.

Thammarat Aree1, Hans-Beat Bürgi, Vasily S Minkov, Elena V Boldyreva, Dmitry Chernyshov, Karl W Törnroos.   

Abstract

The molecular dynamics in the crystal and the thermodynamic functions of the β-polymorph of glycine have been determined from a combination of molecular translation-libration frequencies reflecting the temperature dependence of atomic displacement parameters (ADPs), with frequencies derived from ONIOM(DFT:PM3) calculations on a 15-molecule β-glycine cluster. ADPs have been obtained from variable-temperature diffraction data to 0.5 Å resolution collected with X-ray synchrotron (10-300 K) and sealed tube radiation (50-298 K). At the higher temperatures, the ADPs of β-glycine from synchrotron are larger than those from sealed tube probably due to different experimental conditions. The lattice vibration frequencies from normal-mode analysis of ADPs and the internal vibration frequencies from ONIOM(B3LYP/6-311+G(2d,p):PM3) calculations agree with those from spectroscopy. Estimation of thermodynamic functions using the vibrational frequencies, the Einstein and Debye models of heat capacity, and the room-temperature compressibility provides C(p), H(vib), and S(vib) that agree with those from calorimetry. The β-phase with higher H and G is found to be less stable than the α-phase in the temperature range of the experiment.

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Year:  2013        PMID: 23865724     DOI: 10.1021/jp404408h

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  2 in total

1.  Dynamics and disorder: on the stability of pyrazinamide polymorphs.

Authors:  Anna Agnieszka Hoser; Toms Rekis; Anders Østergaard Madsen
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2022-06-01

2.  Low-frequency lattice vibrations from atomic displacement parameters of α-FOX-7, a high energy density material.

Authors:  Thammarat Aree; Charles J McMonagle; Adam A L Michalchuk; Dmitry Chernyshov
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2022-05-11
  2 in total

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