Literature DB >> 23865375

Escherichia coli heptosyltransferase I: investigation of protein dynamics of a GT-B structural enzyme.

Daniel J Czyzyk1, Shreya S Sawant, Carlos A Ramirez-Mondragon, Manju M Hingorani, Erika A Taylor.   

Abstract

Heptosyltransferase I (HepI), the enzyme responsible for the transfer of l-glycero-d-manno-heptose to a 3-deoxy-α-d-manno-oct-2-ulopyranosonic acid (Kdo) of the growing core region of lipopolysaccharide, is a member of the GT-B structural class of enzymes. Crystal structures have revealed open and closed conformations of apo and ligand-bound GT-B enzymes, implying that large-scale protein conformational dynamics play a role in their reaction mechanism. Here we report transient kinetic analysis of conformational changes in HepI reported by intrinsic tryptophan fluorescence and present the first real-time evidence of a GT-B enzyme undergoing a substrate binding-induced transition from an open to closed state prior to catalysis.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23865375      PMCID: PMC3867311          DOI: 10.1021/bi400807r

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  The 1.9 A crystal structure of Escherichia coli MurG, a membrane-associated glycosyltransferase involved in peptidoglycan biosynthesis.

Authors:  S Ha; D Walker; Y Shi; S Walker
Journal:  Protein Sci       Date:  2000-06       Impact factor: 6.725

Review 2.  Genetics of lipopolysaccharide biosynthesis in enteric bacteria.

Authors:  C A Schnaitman; J D Klena
Journal:  Microbiol Rev       Date:  1993-09

3.  Catalytic mechanism of enterococcal kanamycin kinase (APH(3')-IIIa): viscosity, thio, and solvent isotope effects support a Theorell-Chance mechanism.

Authors:  G A McKay; G D Wright
Journal:  Biochemistry       Date:  1996-07-02       Impact factor: 3.162

4.  Lipopolysaccharide biosynthesis without the lipids: recognition promiscuity of Escherichia coli heptosyltransferase I.

Authors:  Daniel J Czyzyk; Cassie Liu; Erika A Taylor
Journal:  Biochemistry       Date:  2011-11-15       Impact factor: 3.162

5.  Crystal structure of the MurG:UDP-GlcNAc complex reveals common structural principles of a superfamily of glycosyltransferases.

Authors:  Yanan Hu; Lan Chen; Sha Ha; Ben Gross; Brian Falcone; Deborah Walker; Maryam Mokhtarzadeh; Suzanne Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-21       Impact factor: 11.205

6.  Structure of the TDP-epi-vancosaminyltransferase GtfA from the chloroeremomycin biosynthetic pathway.

Authors:  Anne M Mulichak; Heather C Losey; Wei Lu; Zdzislaw Wawrzak; Christopher T Walsh; R Michael Garavito
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-21       Impact factor: 11.205

7.  Two mutations which affect the barrier function of the Escherichia coli K-12 outer membrane.

Authors:  W G Coleman; L Leive
Journal:  J Bacteriol       Date:  1979-09       Impact factor: 3.490

Review 8.  Lipid A modification systems in gram-negative bacteria.

Authors:  Christian R H Raetz; C Michael Reynolds; M Stephen Trent; Russell E Bishop
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

Review 9.  Glycosyltransferases: structures, functions, and mechanisms.

Authors:  L L Lairson; B Henrissat; G J Davies; S G Withers
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

10.  Structural and enzymatic analysis of MshA from Corynebacterium glutamicum: substrate-assisted catalysis.

Authors:  Matthew W Vetting; Patrick A Frantom; John S Blanchard
Journal:  J Biol Chem       Date:  2008-04-04       Impact factor: 5.157

View more
  7 in total

1.  The Stories Tryptophans Tell: Exploring Protein Dynamics of Heptosyltransferase I from Escherichia coli.

Authors:  Joy M Cote; Carlos A Ramirez-Mondragon; Zarek S Siegel; Daniel J Czyzyk; Jiali Gao; Yuk Y Sham; Ishita Mukerji; Erika A Taylor
Journal:  Biochemistry       Date:  2017-01-30       Impact factor: 3.162

2.  Opposites Attract: Escherichia coli Heptosyltransferase I Conformational Changes Induced by Interactions between the Substrate and Positively Charged Residues.

Authors:  Joy M Cote; Cody J S Hecht; Kaelan R Patel; Carlos A Ramirez-Mondragon; Yuk Y Sham; Erika A Taylor
Journal:  Biochemistry       Date:  2020-02-10       Impact factor: 3.162

3.  Ligand-Induced Conformational and Dynamical Changes in a GT-B Glycosyltransferase: Molecular Dynamics Simulations of Heptosyltransferase I Complexes.

Authors:  Bakar A Hassan; Jozafina Milicaj; Carlos Andres Ramirez-Mondragon; Yuk Yin Sham; Erika A Taylor
Journal:  J Chem Inf Model       Date:  2021-12-30       Impact factor: 4.956

4.  Synthesis, kinetics and inhibition of Escherichia coli Heptosyltransferase I by monosaccharide analogues of Lipid A.

Authors:  Noreen K Nkosana; Daniel J Czyzyk; Zarek S Siegel; Joy M Cote; Erika A Taylor
Journal:  Bioorg Med Chem Lett       Date:  2018-02-02       Impact factor: 2.823

5.  Conserved Conformational Hierarchy across Functionally Divergent Glycosyltransferases of the GT-B Structural Superfamily as Determined from Microsecond Molecular Dynamics.

Authors:  Carlos A Ramirez-Mondragon; Megin E Nguyen; Jozafina Milicaj; Bakar A Hassan; Frank J Tucci; Ramaiah Muthyala; Jiali Gao; Erika A Taylor; Yuk Y Sham
Journal:  Int J Mol Sci       Date:  2021-04-28       Impact factor: 5.923

6.  Discovery of first-in-class nanomolar inhibitors of heptosyltransferase I reveals a new aminoglycoside target and potential alternative mechanism of action.

Authors:  Jozafina Milicaj; Bakar A Hassan; Joy M Cote; Carlos A Ramirez-Mondragon; Nadiya Jaunbocus; Angelika Rafalowski; Kaelan R Patel; Colleen D Castro; Ramaiah Muthyala; Yuk Y Sham; Erika A Taylor
Journal:  Sci Rep       Date:  2022-05-04       Impact factor: 4.996

Review 7.  The Glycosyltransferases of LPS Core: A Review of Four Heptosyltransferase Enzymes in Context.

Authors:  Joy M Cote; Erika A Taylor
Journal:  Int J Mol Sci       Date:  2017-10-27       Impact factor: 5.923

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.