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Literature DB >> 23850893

A century of enzyme kinetic analysis, 1913 to 2013.

Abstract

This review traces the history and logical progression of methods for quantitative analysis of enzyme kinetics from the 1913 Michaelis and Menten paper to the application of modern computational methods today. Following a brief review of methods for fitting steady state kinetic data, modern methods are highlighted for fitting full progress curve kinetics based upon numerical integration of rate equations, including a re-analysis of the original Michaelis-Menten full time course kinetic data. Finally, several illustrations of modern transient state kinetic methods of analysis are shown which enable the elucidation of reactions occurring at the active sites of enzymes in order to relate structure and function.

Entities: CellLine Chemical Disease Gene Species

Keywords: 5-enoylpyruvoylshikimate-3-phosphate; 7-diethylamino-3-[([(2-maleimidyl)ethyl]amino)carbonyl]coumarin; Computer simulation; EPSP; Enzyme kinetics; Global data fitting; HIV reverse transciptase; HIVRT; MDCC; Michaelis–Menten; S3P; shikimate 3-phosphate

Mesh：

Substances：
Enzymes

Year: 2013 PMID： 23850893 PMCID： PMC4624389 DOI： 10.1016/j.febslet.2013.07.012

Source DB: PubMed Journal: FEBS Lett ISSN： 0014-5793 Impact factor: 4.124

27 in total

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Authors: K A Johnson; E W Taylor
Journal: Biochemistry Date: 1978-08-22 Impact factor: 3.162

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Authors: G E Briggs; J B Haldane
Journal: Biochem J Date: 1925 Impact factor: 3.857

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Authors: K S Anderson; K A Johnson
Journal: J Biol Chem Date: 1990-04-05 Impact factor: 5.157

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Authors: P Kuzmic
Journal: Anal Biochem Date: 1996-06-01 Impact factor: 3.365

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Authors: B A Barshop; R F Wrenn; C Frieden
Journal: Anal Biochem Date: 1983-04-01 Impact factor: 3.365

6. Role of induced fit in limiting discrimination against AZT by HIV reverse transcriptase.

Authors: Matthew W Kellinger; Kenneth A Johnson
Journal: Biochemistry Date: 2011-05-13 Impact factor: 3.162

7. How conformational dynamics of DNA polymerase select correct substrates: experiments and simulations.

Authors: Serdal Kirmizialtin; Virginia Nguyen; Kenneth A Johnson; Ron Elber
Journal: Structure Date: 2012-04-03 Impact factor: 5.006

8. Alanine racemase free energy profiles from global analyses of progress curves.

Authors: M Ashley Spies; Joshua J Woodward; Mitchell R Watnik; Michael D Toney
Journal: J Am Chem Soc Date: 2004-06-23 Impact factor: 15.419

9. Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance.

Authors: H Huang; R Chopra; G L Verdine; S C Harrison
Journal: Science Date: 1998-11-27 Impact factor: 47.728

10. Observation by 13C NMR of the EPSP synthase tetrahedral intermediate bound to the enzyme active site.

Authors: K S Anderson; R D Sammons; G C Leo; J A Sikorski; A J Benesi; K A Johnson
Journal: Biochemistry Date: 1990-02-13 Impact factor: 3.162

30 in total

1. Evidence of a preferred kinetic pathway in the carnitine acetyltransferase reaction.

Authors: Michael J Kratochvil; Nick K Balerud; Samantha J Schindler; Michael A Moxley
Journal: Arch Biochem Biophys Date: 2020-07-22 Impact factor: 4.013

2. Progress-curve analysis through integrated rate equations and its use to study cholinesterase reaction dynamics.

Authors: Marko Goličnik
Journal: J Mol Neurosci Date: 2014-07 Impact factor: 3.444

Review 3. Approaches for measuring the dynamics of RNA-protein interactions.

Authors: Donny D Licatalosi; Xuan Ye; Eckhard Jankowsky
Journal: Wiley Interdiscip Rev RNA Date: 2019-08-20 Impact factor: 9.957

Review 4. ERK as a model for systems biology of enzyme kinetics in cells.

Authors: Alan S Futran; A James Link; Rony Seger; Stanislav Y Shvartsman
Journal: Curr Biol Date: 2013-11-04 Impact factor: 10.834

5. Enzymatic turnover of macromolecules generates long-lasting protein-water-coupled motions beyond reaction steady state.

Authors: Jessica Dielmann-Gessner; Moran Grossman; Valeria Conti Nibali; Benjamin Born; Inna Solomonov; Gregg B Fields; Martina Havenith; Irit Sagi
Journal: Proc Natl Acad Sci U S A Date: 2014-11-25 Impact factor: 11.205

6. A catch and release program for single-stranded DNA.

Authors: Robert L Eoff; Kevin D Raney
Journal: J Biol Chem Date: 2017-08-04 Impact factor: 5.157

7. The hyperthermophilic α-amylase from Thermococcus sp. HJ21 does not require exogenous calcium for thermostability because of high-binding affinity to calcium.

Authors: Huaixu Cheng; Zhidan Luo; Mingsheng Lu; Song Gao; Shujun Wang
Journal: J Microbiol Date: 2017-03-01 Impact factor: 3.422

8. Mechanistic Origins of Enzyme Activation in Human Glucokinase Variants Associated with Congenital Hyperinsulinism.

Authors: Shawn M Sternisha; Peilu Liu; Alan G Marshall; Brian G Miller
Journal: Biochemistry Date: 2018-02-20 Impact factor: 3.162

9. Primer release is the rate-limiting event in lagging-strand synthesis mediated by the T7 replisome.

Authors: Alfredo J Hernandez; Seung-Joo Lee; Charles C Richardson
Journal: Proc Natl Acad Sci U S A Date: 2016-05-09 Impact factor: 11.205

10. Probing conformational dynamics of an enzymatic active site by an in situ single fluorogenic probe under piconewton force manipulation.

Authors: Nibedita Pal; Meiling Wu; H Peter Lu
Journal: Proc Natl Acad Sci U S A Date: 2016-12-08 Impact factor: 11.205