Literature DB >> 23850140

Technological advances in site-directed spin labeling of proteins.

Wayne L Hubbell1, Carlos J López, Christian Altenbach, Zhongyu Yang.   

Abstract

Molecular flexibility over a wide time range is of central importance to the function of many proteins, both soluble and membrane. Revealing the modes of flexibility, their amplitudes, and time scales under physiological conditions is the challenge for spectroscopic methods, one of which is site-directed spin labeling EPR (SDSL-EPR). Here we provide an overview of some recent technological advances in SDSL-EPR related to investigation of structure, structural heterogeneity, and dynamics of proteins. These include new classes of spin labels, advances in measurement of long range distances and distance distributions, methods for identifying backbone and conformational fluctuations, and new strategies for determining the kinetics of protein motion.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23850140      PMCID: PMC3805720          DOI: 10.1016/j.sbi.2013.06.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  53 in total

1.  Conformational exchange in a membrane transport protein is altered in protein crystals.

Authors:  Daniel M Freed; Peter S Horanyi; Michael C Wiener; David S Cafiso
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

2.  Structural origin of weakly ordered nitroxide motion in spin-labeled proteins.

Authors:  Mark R Fleissner; Duilio Cascio; Wayne L Hubbell
Journal:  Protein Sci       Date:  2009-05       Impact factor: 6.725

3.  Relaxation-based distance measurements between a nitroxide and a lanthanide spin label.

Authors:  H Jäger; A Koch; V Maus; H W Spiess; G Jeschke
Journal:  J Magn Reson       Date:  2008-07-18       Impact factor: 2.229

4.  Multifrequency electron spin resonance study of the dynamics of spin labeled T4 lysozyme.

Authors:  Ziwei Zhang; Mark R Fleissner; Dmitriy S Tipikin; Zhichun Liang; Jozef K Moscicki; Keith A Earle; Wayne L Hubbell; Jack H Freed
Journal:  J Phys Chem B       Date:  2010-04-29       Impact factor: 2.991

5.  W-Band pulse EPR distance measurements in peptides using Gd(3+)-dipicolinic acid derivatives as spin labels.

Authors:  Michal Gordon-Grossman; Ilia Kaminker; Yana Gofman; Yechiel Shai; Daniella Goldfarb
Journal:  Phys Chem Chem Phys       Date:  2011-05-09       Impact factor: 3.676

6.  Structural origins of nitroxide side chain dynamics on membrane protein α-helical sites.

Authors:  Brett M Kroncke; Peter S Horanyi; Linda Columbus
Journal:  Biochemistry       Date:  2010-11-08       Impact factor: 3.162

7.  Molecular origin of electron paramagnetic resonance line shapes on β-barrel membrane proteins: the local solvation environment modulates spin-label configuration.

Authors:  Daniel M Freed; Ali K Khan; Peter S Horanyi; David S Cafiso
Journal:  Biochemistry       Date:  2011-09-22       Impact factor: 3.162

8.  Pulsed ESR dipolar spectroscopy for distance measurements in immobilized spin labeled proteins in liquid solution.

Authors:  Zhongyu Yang; Yangping Liu; Peter Borbat; Jay L Zweier; Jack H Freed; Wayne L Hubbell
Journal:  J Am Chem Soc       Date:  2012-06-11       Impact factor: 15.419

9.  Refined distances between paramagnetic centers of a multi-copper nitrite reductase determined by pulsed EPR (iDEER) spectroscopy.

Authors:  Jessica H van Wonderen; Dorota N Kostrz; Christopher Dennison; Fraser MacMillan
Journal:  Angew Chem Int Ed Engl       Date:  2013-01-07       Impact factor: 15.336

10.  Dynamics of tropomyosin in muscle fibers as monitored by saturation transfer EPR of bi-functional probe.

Authors:  Roni F Rayes; Tamás Kálai; Kálmán Hideg; Michael A Geeves; Piotr G Fajer
Journal:  PLoS One       Date:  2011-06-20       Impact factor: 3.240

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  84 in total

1.  Spin labeling and Double Electron-Electron Resonance (DEER) to Deconstruct Conformational Ensembles of HIV Protease.

Authors:  Thomas M Casey; Gail E Fanucci
Journal:  Methods Enzymol       Date:  2015-09-01       Impact factor: 1.600

2.  An Integrated Spin-Labeling/Computational-Modeling Approach for Mapping Global Structures of Nucleic Acids.

Authors:  Narin S Tangprasertchai; Xiaojun Zhang; Yuan Ding; Kenneth Tham; Remo Rohs; Ian S Haworth; Peter Z Qin
Journal:  Methods Enzymol       Date:  2015-08-08       Impact factor: 1.600

3.  Doubly Spin-Labeled RNA as an EPR Reporter for Studying Multicomponent Supramolecular Assemblies.

Authors:  Alexey A Malygin; Dmitri M Graifer; Maria I Meschaninova; Aliya G Venyaminova; Olesya A Krumkacheva; Matvey V Fedin; Galina G Karpova; Elena G Bagryanskaya
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

4.  EPR Spectroscopy Targets Structural Changes in the E. coli Membrane Fusion CusB upon Cu(I) Binding.

Authors:  Aviv Meir; Ahmad Abdelhai; Yoni Moskovitz; Sharon Ruthstein
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

5.  Organization of the mitochondrial apoptotic BAK pore: oligomerization of the BAK homodimers.

Authors:  Sreevidya Aluvila; Tirtha Mandal; Eric Hustedt; Peter Fajer; Jun Yong Choe; Kyoung Joon Oh
Journal:  J Biol Chem       Date:  2013-12-11       Impact factor: 5.157

6.  Circular dichroism and site-directed spin labeling reveal structural and dynamical features of high-pressure states of myoglobin.

Authors:  Michael T Lerch; Joseph Horwitz; John McCoy; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

7.  Reduction kinetics and electrochemistry of tetracarboxylate nitroxides.

Authors:  Shengdian Huang; Hui Zhang; Joseph T Paletta; Suchada Rajca; Andrzej Rajca
Journal:  Free Radic Res       Date:  2018-02-27

Review 8.  The two sides of a lipid-protein story.

Authors:  Luis G Mansor Basso; Luis F Santos Mendes; Antonio J Costa-Filho
Journal:  Biophys Rev       Date:  2016-04-30

9.  Conformational Dynamics in Extended RGD-Containing Peptides.

Authors:  William R Lindemann; Alexander J Mijalis; José L Alonso; Peter P Borbat; Jack H Freed; M Amin Arnaout; Bradley L Pentelute; Julia H Ortony
Journal:  Biomacromolecules       Date:  2020-06-16       Impact factor: 6.988

10.  Experimental mapping of DNA duplex shape enabled by global lineshape analyses of a nucleotide-independent nitroxide probe.

Authors:  Yuan Ding; Xiaojun Zhang; Kenneth W Tham; Peter Z Qin
Journal:  Nucleic Acids Res       Date:  2014-08-04       Impact factor: 16.971

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