Literature DB >> 23841823

Differential binding models for isothermal titration calorimetry: moving beyond the Wiseman isotherm.

Isaac Herrera1, Mitchell A Winnik.   

Abstract

We present a set of model-independent differential equations to analyze isothermal titration calorimetry (ITC) experiments. In contrast with previous approaches that begin with specific assumptions about the number of binding sites and the interactions among them (e.g., sequential, independent, cooperative), our derivation makes more general assumptions, such that a receptor with multiple sites for one type of ligand species (homotropic binding) can be studied with the same analytical expression. Our approach is based on the binding polynomial formalism, and the resulting analytical expressions can be extended to account for any number of binding sites and any type of binding interaction among them. We refer to the set of model-independent differential equations to study ITC experiments as a differential binding model (DBM). To demonstrate the flexibility of our DBM, we present the analytical expressions to study receptors with one or two binding sites. The DBM for a receptor with one site is equivalent to the Wiseman isotherm but with a more intuitive representation that depends on the binding polynomial and the dimensionless parameter c = K·MT, where K is the binding constant and MT the total receptor concentration. In addition, we show how to constrain the general DBM for a receptor with two sites to represent sequential, independent, or cooperative binding interactions between the sites. We use the sequential binding model to study the binding interaction between Gd(III) and citrate anions. In addition, we simulate calorimetry titrations of receptors with positive, negative, and noncooperative interactions between the two binding sites. Finally, we derive a DBM for titrations of receptors with n-independent binding sites.

Entities:  

Year:  2013        PMID: 23841823     DOI: 10.1021/jp311812a

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Integration and global analysis of isothermal titration calorimetry data for studying macromolecular interactions.

Authors:  Chad A Brautigam; Huaying Zhao; Carolyn Vargas; Sandro Keller; Peter Schuck
Journal:  Nat Protoc       Date:  2016-04-07       Impact factor: 13.491

2.  Compaction and condensation of DNA mediated by the C-terminal domain of Hfq.

Authors:  Antoine Malabirade; Kai Jiang; Krzysztof Kubiak; Alvaro Diaz-Mendoza; Fan Liu; Jeroen A van Kan; Jean-François Berret; Véronique Arluison; Johan R C van der Maarel
Journal:  Nucleic Acids Res       Date:  2017-07-07       Impact factor: 16.971

Review 3.  SEDPHAT--a platform for global ITC analysis and global multi-method analysis of molecular interactions.

Authors:  Huaying Zhao; Grzegorz Piszczek; Peter Schuck
Journal:  Methods       Date:  2014-12-02       Impact factor: 3.608

4.  Theoretical and Experimental Design of Heavy Metal-Mopping Magnetic Nanoparticles.

Authors:  Elia Roma; Pietro Corsi; Max Willinger; Nikolaus Simon Leitner; Ronald Zirbs; Erik Reimhult; Barbara Capone; Tecla Gasperi
Journal:  ACS Appl Mater Interfaces       Date:  2021-01-03       Impact factor: 9.229

5.  Counterintuitive Electrostatics upon Metal Ion Coordination to a Receptor with Two Homotopic Binding Sites.

Authors:  Vidar Aspelin; Anna Lidskog; Carlos Solano Arribas; Stefan Hervø-Hansen; Björn Stenqvist; Richard Chudoba; Kenneth Wärnmark; Mikael Lund
Journal:  J Am Chem Soc       Date:  2022-02-10       Impact factor: 15.419

6.  Isothermal Titration Calorimetry Directly Measures the Selective Swelling of Block Copolymer Vesicles in the Presence of Organic Acid.

Authors:  Qiuya Zhang; Xiangyi Huang; Lu Zhang; Zhaoxia Jin
Journal:  ACS Omega       Date:  2022-03-21
  6 in total

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