Literature DB >> 23841614

Complete mitochondrial genome of Pyropia yezoensis: reasserting the revision of genus Porphyra.

Fanna Kong1, Peipei Sun, Min Cao, Li Wang, Yunxiang Mao.   

Abstract

Pyropia yezoensis Ueda, belonging to the Bangiales order Rhodophyte, is economically important seaweed distributed along the coastal region of the northwest Pacific. In this study, we report the complete mitochondrial DNA sequences of P. yezoensis. The entire genome comprised 41,688 bp with circular organization, which is the longest among the red algae sequenced to date. The overall AT composition is 62.22% and the average AT content of PCG, 16S rRNA, tRNA and noncoding region are 67.51%, 65.23%, 61.23% and 72.67%, respectively The mitochondrial DNA of P. yezoensis encoded 23 proteins, 4 open reading frames, 3 ribosomal RNAs and 27 transfer RNA genes. The comparison analyses showed that obvious variation occurred on the gene content and gene structure among P. yezoensis. P. haitanensis and Porphyra purpurea. Phylogenetic analysis revealed that P. yezoensis is more closely related to P. haitanensis than to P. purpurea, and P. purpurea was phylogenetically distinct from the two species, which confirmed the reassignment of Pyropia and Porphyra in Bangiaceae.

Entities:  

Keywords:  Genomic variation; Pyropia yezoensis; mitochondrial DNA; phylogenetic analysis; red algae

Mesh:

Substances:

Year:  2013        PMID: 23841614     DOI: 10.3109/19401736.2013.803538

Source DB:  PubMed          Journal:  Mitochondrial DNA        ISSN: 1940-1736


  5 in total

Review 1.  Health Functionality and Quality Control of Laver (Porphyra, Pyropia): Current Issues and Future Perspectives as an Edible Seaweed.

Authors:  Tae Jin Cho; Min Suk Rhee
Journal:  Mar Drugs       Date:  2019-12-23       Impact factor: 5.118

2.  Identification of Respiratory Burst Oxidase Homolog (Rboh) Family Genes From Pyropia yezoensis and Their Correlation With Archeospore Release.

Authors:  Tian-Yu Gui; Da-Hai Gao; Hong-Chang Ding; Xing-Hong Yan
Journal:  Front Plant Sci       Date:  2022-07-12       Impact factor: 6.627

3.  Highly Conserved Mitochondrial Genomes among Multicellular Red Algae of the Florideophyceae.

Authors:  Eun Chan Yang; Kyeong Mi Kim; Su Yeon Kim; JunMo Lee; Ga Hun Boo; Jung-Hyun Lee; Wendy A Nelson; Gangman Yi; William E Schmidt; Suzanne Fredericq; Sung Min Boo; Debashish Bhattacharya; Hwan Su Yoon
Journal:  Genome Biol Evol       Date:  2015-08-04       Impact factor: 3.416

4.  Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes.

Authors:  Jeffery R Hughey; Paul W Gabrielson; Laurence Rohmer; Jacquie Tortolani; Mayra Silva; Kathy Ann Miller; Joel D Young; Craig Martell; Erik Ruediger
Journal:  Sci Rep       Date:  2014-06-04       Impact factor: 4.379

5.  Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology.

Authors:  Li Wang; Yunxiang Mao; Fanna Kong; Min Cao; Peipei Sun
Journal:  BMC Genomics       Date:  2015-11-26       Impact factor: 3.969

  5 in total

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