Literature DB >> 23836522

RNA tectonics (tectoRNA) for RNA nanostructure design and its application in synthetic biology.

Junya Ishikawa1, Hiroyuki Furuta, Yoshiya Ikawa.   

Abstract

RNA molecules are versatile biomaterials that act not only as DNA-like genetic materials but also have diverse functions in regulation of cellular biosystems. RNA is capable of regulating gene expression by sequence-specific hybridization. This feature allows the design of RNA-based artificial gene regulators (riboregulators). RNA can also build complex two-dimensional (2D) and 3D nanostructures, which afford protein-like functions and make RNA an attractive material for nanobiotechnology. RNA tectonics is a methodology in RNA nanobiotechnology for the design and construction of RNA nanostructures/nanoobjects through controlled self-assembly of modular RNA units (tectoRNAs). RNA nanostructures designed according to the concept of RNA tectonics are also attractive as tools in synthetic biology, but in vivo RNA tectonics is still in the early stages. This review presents a summary of the achievements of RNA tectonics and its related researches in vitro, and also introduces recent developments that facilitated the use of RNA nanostructures in bacterial cells.
Copyright © 2013 John Wiley & Sons, Ltd.

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Year:  2013        PMID: 23836522     DOI: 10.1002/wrna.1185

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  17 in total

1.  Oligomerization of a Bimolecular Ribozyme Modestly Rescues its Structural Defects that Disturb Interdomain Assembly to Form the Catalytic Site.

Authors:  Md Motiar Rahman; Shigeyoshi Matsumura; Yoshiya Ikawa
Journal:  J Mol Evol       Date:  2018-08-14       Impact factor: 2.395

2.  Three-way junction conformation dictates self-association of phage packaging RNAs.

Authors:  Yumeng Hao; Jeffrey S Kieft
Journal:  RNA Biol       Date:  2016-05-24       Impact factor: 4.652

3.  Deducing putative ancestral forms of GNRA/receptor interactions from the ribosome.

Authors:  Erin R Calkins; Paul Zakrevsky; Vasken L Keleshian; Eduardo G Aguilar; Cody Geary; Luc Jaeger
Journal:  Nucleic Acids Res       Date:  2019-01-10       Impact factor: 16.971

Review 4.  Cellular Delivery of RNA Nanoparticles.

Authors:  Lorena Parlea; Anu Puri; Wojciech Kasprzak; Eckart Bindewald; Paul Zakrevsky; Emily Satterwhite; Kenya Joseph; Kirill A Afonin; Bruce A Shapiro
Journal:  ACS Comb Sci       Date:  2016-08-26       Impact factor: 3.784

5.  Modeling of RNA nanotubes using molecular dynamics simulation.

Authors:  S R Badu; R Melnik; M Paliy; S Prabhakar; A Sebetci; B A Shapiro
Journal:  Eur Biophys J       Date:  2014-09-12       Impact factor: 1.733

Review 6.  Favorable biodistribution, specific targeting and conditional endosomal escape of RNA nanoparticles in cancer therapy.

Authors:  Congcong Xu; Farzin Haque; Daniel L Jasinski; Daniel W Binzel; Dan Shu; Peixuan Guo
Journal:  Cancer Lett       Date:  2017-10-05       Impact factor: 8.679

Review 7.  Stable RNA nanoparticles as potential new generation drugs for cancer therapy.

Authors:  Yi Shu; Fengmei Pi; Ashwani Sharma; Mehdi Rajabi; Farzin Haque; Dan Shu; Markos Leggas; B Mark Evers; Peixuan Guo
Journal:  Adv Drug Deliv Rev       Date:  2013-11-22       Impact factor: 15.470

8.  Diverse self-association properties within a family of phage packaging RNAs.

Authors:  Yumeng Hao; Jeffrey S Kieft
Journal:  RNA       Date:  2014-09-22       Impact factor: 4.942

9.  Global mapping of RNA homodimers in living cells.

Authors:  Marta M Gabryelska; Andrew P Badrock; Jian You Lau; Raymond T O'Keefe; Yanick J Crow; Grzegorz Kudla
Journal:  Genome Res       Date:  2022-03-24       Impact factor: 9.438

10.  Physicochemically tunable polyfunctionalized RNA square architecture with fluorogenic and ribozymatic properties.

Authors:  Daniel L Jasinski; Emil F Khisamutdinov; Yuri L Lyubchenko; Peixuan Guo
Journal:  ACS Nano       Date:  2014-08-26       Impact factor: 15.881

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