Literature DB >> 23836470

SugarBind database (SugarBindDB): a resource of pathogen lectins and corresponding glycan targets.

Baddr Shakhsheer1, Mark Anderson, Khaled Khatib, Leelapavan Tadoori, Lokesh Joshi, Frederique Lisacek, Lynette Hirschman, Elaine Mullen.   

Abstract

SugarBindDB lists pathogen and biotoxin lectins and their carbohydrate ligands in a searchable format. Information is collected from articles published in peer-reviewed scientific journals. Help files guide the user through the search process and provide a review of structures and names of sugars that appear in human oligosaccharides. Glycans are written in the condensed form of the carbohydrate nomenclature system developed by the International Union of Pure and Applied Chemistry (IUPAC). Since its online publication by The MITRE Corporation in 2005, the database has served as a resource for research on the glycobiology of infectious disease. SugarBindDB is currently hosted by the Swiss Institute of Bioinformatics on the ExPASy server and will be enhanced and linked to related resources as part of the wider UniCarbKB initiative. Enhancements will include the option to display glycans in a variety of formats, including modified 2D condensed IUPAC and symbolic nomenclature.
Copyright © 2013 John Wiley & Sons, Ltd.

Entities:  

Keywords:  Adhesin; database; glycan; hemagglutinin; infection; lectin; oligosaccharide; pathogen

Mesh:

Substances:

Year:  2013        PMID: 23836470     DOI: 10.1002/jmr.2285

Source DB:  PubMed          Journal:  J Mol Recognit        ISSN: 0952-3499            Impact factor:   2.137


  7 in total

1.  Combining 3D structure with glycan array data provides insight into the origin of glycan specificity.

Authors:  Oliver C Grant; Matthew B Tessier; Lawrence Meche; Lara K Mahal; Bethany L Foley; Robert J Woods
Journal:  Glycobiology       Date:  2016-02-23       Impact factor: 4.313

2.  Toolboxes for a standardised and systematic study of glycans.

Authors:  Matthew P Campbell; René Ranzinger; Thomas Lütteke; Julien Mariethoz; Catherine A Hayes; Jingyu Zhang; Yukie Akune; Kiyoko F Aoki-Kinoshita; David Damerell; Giorgio Carta; Will S York; Stuart M Haslam; Hisashi Narimatsu; Pauline M Rudd; Niclas G Karlsson; Nicolle H Packer; Frédérique Lisacek
Journal:  BMC Bioinformatics       Date:  2014-01-10       Impact factor: 3.169

Review 3.  Carbohydrates in Cyberspace.

Authors:  Elizabeth Yuriev; Paul A Ramsland
Journal:  Front Immunol       Date:  2015-06-10       Impact factor: 7.561

4.  Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.

Authors:  Heinz Stockinger; Adrian M Altenhoff; Konstantin Arnold; Amos Bairoch; Frederic Bastian; Sven Bergmann; Lydie Bougueleret; Philipp Bucher; Mauro Delorenzi; Lydie Lane; Philippe Le Mercier; Frédérique Lisacek; Olivier Michielin; Patricia M Palagi; Jacques Rougemont; Torsten Schwede; Christian von Mering; Erik van Nimwegen; Daniel Walther; Ioannis Xenarios; Mihaela Zavolan; Evgeny M Zdobnov; Vincent Zoete; Ron D Appel
Journal:  Nucleic Acids Res       Date:  2014-05-03       Impact factor: 16.971

Review 5.  Systemic Lectin-Glycan Interaction of Pathogenic Enteric Bacteria in the Gastrointestinal Tract.

Authors:  Seung-Hak Cho; Jun-Young Park; Cheorl-Ho Kim
Journal:  Int J Mol Sci       Date:  2022-01-27       Impact factor: 5.923

6.  UniCarbKB: building a knowledge platform for glycoproteomics.

Authors:  Matthew P Campbell; Robyn Peterson; Julien Mariethoz; Elisabeth Gasteiger; Yukie Akune; Kiyoko F Aoki-Kinoshita; Frederique Lisacek; Nicolle H Packer
Journal:  Nucleic Acids Res       Date:  2013-11-13       Impact factor: 16.971

7.  SugarBindDB, a resource of glycan-mediated host-pathogen interactions.

Authors:  Julien Mariethoz; Khaled Khatib; Davide Alocci; Matthew P Campbell; Niclas G Karlsson; Nicolle H Packer; Elaine H Mullen; Frederique Lisacek
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

  7 in total

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