Literature DB >> 23836415

Replenishing our defensive microbes.

Luke K Ursell1, William Van Treuren, Jessica L Metcalf, Meg Pirrung, Andrew Gewirtz, Rob Knight.   

Abstract

Large-scale characterization of the human microbiota has largely focused on Western adults, yet these populations may be uncharacteristic because of their diets and lifestyles. In particular, the rise of "Western diseases" may in part stem from reduced exposure to, or even loss of, microbes with which humans have coevolved. Here, we review beneficial microbes associated with pathogen resistance, highlighting the emerging role of complex microbial communities in protecting against disease. We discuss ways in which modern lifestyles and practices may deplete physiologically important microbiota, and explore prospects for reintroducing or encouraging the growth of beneficial microbes to promote the restoration of healthy microbial ecosystems.
Copyright © 2013 WILEY Periodicals, Inc.

Entities:  

Keywords:  antibiotics; ecology; gut microbiota; human microbiome; hygiene hypothesis; pathogens

Mesh:

Year:  2013        PMID: 23836415      PMCID: PMC4102301          DOI: 10.1002/bies.201300018

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  63 in total

Review 1.  Intestinal microbiota is a plastic factor responding to environmental changes.

Authors:  Marco Candela; Elena Biagi; Simone Maccaferri; Silvia Turroni; Patrizia Brigidi
Journal:  Trends Microbiol       Date:  2012-06-05       Impact factor: 17.079

2.  In-feed antibiotic effects on the swine intestinal microbiome.

Authors:  Torey Looft; Timothy A Johnson; Heather K Allen; Darrell O Bayles; David P Alt; Robert D Stedtfeld; Woo Jun Sul; Tiffany M Stedtfeld; Benli Chai; James R Cole; Syed A Hashsham; James M Tiedje; Thad B Stanton
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

3.  Extrathymically generated regulatory T cells control mucosal TH2 inflammation.

Authors:  Steven Z Josefowicz; Rachel E Niec; Hye Young Kim; Piper Treuting; Takatoshi Chinen; Ye Zheng; Dale T Umetsu; Alexander Y Rudensky
Journal:  Nature       Date:  2012-02-08       Impact factor: 49.962

Review 4.  Perinatal and neonatal manipulation of the intestinal microbiome: a note of caution.

Authors:  Josef Neu
Journal:  Nutr Rev       Date:  2007-06       Impact factor: 7.110

5.  Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces.

Authors:  Pauline D Scanlan; Julian R Marchesi
Journal:  ISME J       Date:  2008-07-31       Impact factor: 10.302

6.  The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins.

Authors:  Nathan P McNulty; Tanya Yatsunenko; Ansel Hsiao; Jeremiah J Faith; Brian D Muegge; Andrew L Goodman; Bernard Henrissat; Raish Oozeer; Stéphanie Cools-Portier; Guillaume Gobert; Christian Chervaux; Dan Knights; Catherine A Lozupone; Rob Knight; Alexis E Duncan; James R Bain; Michael J Muehlbauer; Christopher B Newgard; Andrew C Heath; Jeffrey I Gordon
Journal:  Sci Transl Med       Date:  2011-10-26       Impact factor: 17.956

Review 7.  Regulatory T cells suppress systemic and mucosal immune activation to control intestinal inflammation.

Authors:  Ana Izcue; Janine L Coombes; Fiona Powrie
Journal:  Immunol Rev       Date:  2006-08       Impact factor: 12.988

8.  Functional characterization of the antibiotic resistance reservoir in the human microflora.

Authors:  Morten O A Sommer; Gautam Dantas; George M Church
Journal:  Science       Date:  2009-08-28       Impact factor: 47.728

9.  Antibiotics in early life alter the murine colonic microbiome and adiposity.

Authors:  Ilseung Cho; Shingo Yamanishi; Laura Cox; Barbara A Methé; Jiri Zavadil; Kelvin Li; Zhan Gao; Douglas Mahana; Kartik Raju; Isabel Teitler; Huilin Li; Alexander V Alekseyenko; Martin J Blaser
Journal:  Nature       Date:  2012-08-30       Impact factor: 49.962

10.  Insights from characterizing extinct human gut microbiomes.

Authors:  Raul Y Tito; Dan Knights; Jessica Metcalf; Alexandra J Obregon-Tito; Lauren Cleeland; Fares Najar; Bruce Roe; Karl Reinhard; Kristin Sobolik; Samuel Belknap; Morris Foster; Paul Spicer; Rob Knight; Cecil M Lewis
Journal:  PLoS One       Date:  2012-12-12       Impact factor: 3.240

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  19 in total

Review 1.  Microbiota modulation of myeloid cells in cancer therapy.

Authors:  Romina S Goldszmid; Amiran Dzutsev; Sophie Viaud; Laurence Zitvogel; Nicholas P Restifo; Giorgio Trinchieri
Journal:  Cancer Immunol Res       Date:  2015-02       Impact factor: 11.151

Review 2.  The prenatal gut microbiome: are we colonized with bacteria in utero?

Authors:  R W Walker; J C Clemente; I Peter; R J F Loos
Journal:  Pediatr Obes       Date:  2017-04-26       Impact factor: 4.000

3.  The art of targeting gut microbiota for tackling human obesity.

Authors:  Marisol Aguirre; Koen Venema
Journal:  Genes Nutr       Date:  2015-05-20       Impact factor: 5.523

4.  From promotion to management: the wide impact of bacteria on cancer and its treatment.

Authors:  Ernesto Perez-Chanona; Christian Jobin
Journal:  Bioessays       Date:  2014-04-22       Impact factor: 4.345

5.  Impact of probiotic supplements on microbiome diversity following antibiotic treatment of mice.

Authors:  Hannah Grazul; L Leann Kanda; David Gondek
Journal:  Gut Microbes       Date:  2016-03-10

Review 6.  Compartmentalization drives the evolution of symbiotic cooperation.

Authors:  Guillaume Chomicki; Gijsbert D A Werner; Stuart A West; E Toby Kiers
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-08-10       Impact factor: 6.237

7.  Deciphering the Pathobiome: Intra- and Interkingdom Interactions Involving the Pathogen Erysiphe alphitoides.

Authors:  Boris Jakuschkin; Virgil Fievet; Loïc Schwaller; Thomas Fort; Cécile Robin; Corinne Vacher
Journal:  Microb Ecol       Date:  2016-05-05       Impact factor: 4.552

Review 8.  The intestinal metabolome: an intersection between microbiota and host.

Authors:  Luke K Ursell; Henry J Haiser; Will Van Treuren; Neha Garg; Lavanya Reddivari; Jairam Vanamala; Pieter C Dorrestein; Peter J Turnbaugh; Rob Knight
Journal:  Gastroenterology       Date:  2014-03-11       Impact factor: 22.682

Review 9.  Recent advances in characterizing the gastrointestinal microbiome in Crohn's disease: a systematic review.

Authors:  Emily K Wright; Michael A Kamm; Shu Mei Teo; Michael Inouye; Josef Wagner; Carl D Kirkwood
Journal:  Inflamm Bowel Dis       Date:  2015-06       Impact factor: 5.325

10.  Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs).

Authors:  Jennifer M Auchtung; Catherine D Robinson; Robert A Britton
Journal:  Microbiome       Date:  2015-09-30       Impact factor: 14.650

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