Literature DB >> 23835611

The emerging role of cloud computing in molecular modelling.

Jean-Paul Ebejer1, Simone Fulle, Garrett M Morris, Paul W Finn.   

Abstract

There is a growing recognition of the importance of cloud computing for large-scale and data-intensive applications. The distinguishing features of cloud computing and their relationship to other distributed computing paradigms are described, as are the strengths and weaknesses of the approach. We review the use made to date of cloud computing for molecular modelling projects and the availability of front ends for molecular modelling applications. Although the use of cloud computing technologies for molecular modelling is still in its infancy, we demonstrate its potential by presenting several case studies. Rapid growth can be expected as more applications become available and costs continue to fall; cloud computing can make a major contribution not just in terms of the availability of on-demand computing power, but could also spur innovation in the development of novel approaches that utilize that capacity in more effective ways.
Copyright © 2013 Elsevier Inc. All rights reserved.

Keywords:  Cheminformatics; Cloud computing; Computer aided-drug design; Docking; Molecular modelling; Virtual screening

Mesh:

Year:  2013        PMID: 23835611     DOI: 10.1016/j.jmgm.2013.06.002

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  6 in total

1.  Fragment-based docking: development of the CHARMMing Web user interface as a platform for computer-aided drug design.

Authors:  Yuri Pevzner; Emilie Frugier; Vinushka Schalk; Amedeo Caflisch; H Lee Woodcock
Journal:  J Chem Inf Model       Date:  2014-09-10       Impact factor: 4.956

2.  Putative histidine kinase inhibitors with antibacterial effect against multi-drug resistant clinical isolates identified by in vitro and in silico screens.

Authors:  Nadya Velikova; Simone Fulle; Ana Sousa Manso; Milena Mechkarska; Paul Finn; J Michael Conlon; Marco Rinaldo Oggioni; Jerry M Wells; Alberto Marina
Journal:  Sci Rep       Date:  2016-05-13       Impact factor: 4.379

Review 3.  A Structure-Based Drug Discovery Paradigm.

Authors:  Maria Batool; Bilal Ahmad; Sangdun Choi
Journal:  Int J Mol Sci       Date:  2019-06-06       Impact factor: 5.923

4.  Applying high-performance computing in drug discovery and molecular simulation.

Authors:  Tingting Liu; Dong Lu; Hao Zhang; Mingyue Zheng; Huaiyu Yang; Yechun Xu; Cheng Luo; Weiliang Zhu; Kunqian Yu; Hualiang Jiang
Journal:  Natl Sci Rev       Date:  2016-01-11       Impact factor: 17.275

5.  GROMACS in the Cloud: A Global Supercomputer to Speed Up Alchemical Drug Design.

Authors:  Carsten Kutzner; Christian Kniep; Austin Cherian; Ludvig Nordstrom; Helmut Grubmüller; Bert L de Groot; Vytautas Gapsys
Journal:  J Chem Inf Model       Date:  2022-03-30       Impact factor: 4.956

Review 6.  Bridging Molecular Docking to Molecular Dynamics in Exploring Ligand-Protein Recognition Process: An Overview.

Authors:  Veronica Salmaso; Stefano Moro
Journal:  Front Pharmacol       Date:  2018-08-22       Impact factor: 5.810

  6 in total

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