Literature DB >> 23832216

Mimer: an automated spreadsheet-based crystallization screening system.

Ditlev Egeskov Brodersen1, Gregers Rom Andersen, Christian Brix Folsted Andersen.   

Abstract

In this paper, a simple low-cost alternative to large commercial systems for preparing macromolecular crystallization conditions is described. Using an intuitive spreadsheet-based approach, the system allows the rapid calculation of relevant pipetting volumes given known stock-solution concentrations and incorporates the automatic design of custom crystallization screens via the incomplete-factorial and grid-screen approaches. Automated dispensing of the resulting crystallization screens is achieved using a generic and relatively inexpensive liquid handler.

Keywords:  crystallization screening; grid screen; incomplete factorial; protein crystallization; software; spreadsheet

Mesh:

Substances:

Year:  2013        PMID: 23832216      PMCID: PMC3702333          DOI: 10.1107/S1744309113014425

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

1.  Purification, crystallization and preliminary crystallographic studies of a PacL homologue from Listeria monocytogenes.

Authors:  Kim Langmach Hein; Poul Nissen; Jens Preben Morth
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-03-27

2.  Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.

Authors:  Søren F Midtgaard; Jannie Assenholt; Anette Thyssen Jonstrup; Lan B Van; Torben Heick Jensen; Ditlev E Brodersen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-01       Impact factor: 11.205

3.  The structure of bovine complement component 3 reveals the basis for thioester function.

Authors:  Folmer Fredslund; Lasse Jenner; Lise B Husted; Jens Nyborg; Gregers Rom Andersen; Lars Sottrup-Jensen
Journal:  J Mol Biol       Date:  2006-06-21       Impact factor: 5.469

4.  Structure of and influence of a tick complement inhibitor on human complement component 5.

Authors:  Folmer Fredslund; Nick S Laursen; Pietro Roversi; Lasse Jenner; Cristiano L P Oliveira; Jan S Pedersen; Miles A Nunn; Susan M Lea; Richard Discipio; Lars Sottrup-Jensen; Gregers R Andersen
Journal:  Nat Immunol       Date:  2008-06-08       Impact factor: 25.606

5.  Systematic use of the incomplete factorial approach in the design of protein crystallization experiments.

Authors:  C Abergel; M Moulard; H Moreau; E Loret; C Cambillau; J C Fontecilla-Camps
Journal:  J Biol Chem       Date:  1991-10-25       Impact factor: 5.157

6.  Crystal structure of the plasma membrane proton pump.

Authors:  Bjørn P Pedersen; Morten J Buch-Pedersen; J Preben Morth; Michael G Palmgren; Poul Nissen
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

7.  Structural basis for activation of the complement system by component C4 cleavage.

Authors:  Rune T Kidmose; Nick S Laursen; József Dobó; Troels R Kjaer; Sofia Sirotkina; Laure Yatime; Lars Sottrup-Jensen; Steffen Thiel; Péter Gál; Gregers R Andersen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

8.  Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA.

Authors:  Christian B F Andersen; Lionel Ballut; Jesper S Johansen; Hala Chamieh; Klaus H Nielsen; Cristiano L P Oliveira; Jan Skov Pedersen; Bertrand Séraphin; Hervé Le Hir; Gregers Rom Andersen
Journal:  Science       Date:  2006-08-24       Impact factor: 47.728

9.  Protein crystallization using incomplete factorial experiments.

Authors:  C W Carter; C W Carter
Journal:  J Biol Chem       Date:  1979-12-10       Impact factor: 5.157

10.  Critical roles of hydrophobicity and orientation of side chains for inactivation of sarcoplasmic reticulum Ca2+-ATPase with thapsigargin and thapsigargin analogs.

Authors:  Anne-Marie L Winther; Huizhen Liu; Yonathan Sonntag; Claus Olesen; Marc le Maire; Helmer Soehoel; Carl-Erik Olsen; S Brøgger Christensen; Poul Nissen; Jesper V Møller
Journal:  J Biol Chem       Date:  2010-06-15       Impact factor: 5.157

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  5 in total

1.  Structure and binding properties of a cameloid nanobody raised against KDM5B.

Authors:  Anders Wiuf; Line Hyltoft Kristensen; Ole Kristensen; Jerzy Dorosz; Jonas Jensen; Michael Gajhede
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-09-23       Impact factor: 1.056

2.  Structure of the omalizumab Fab.

Authors:  Rasmus K Jensen; Melanie Plum; Luna Tjerrild; Thilo Jakob; Edzard Spillner; Gregers Rom Andersen
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-03-20       Impact factor: 1.056

3.  Crystallization and X-ray analysis of monodisperse human properdin.

Authors:  Dennis Vestergaard Pedersen; Margot Revel; Trine Amalie Fogh Gadeberg; Gregers Rom Andersen
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-01-23       Impact factor: 1.056

4.  Optimizing Associative Experimental Design for Protein Crystallization Screening.

Authors:  Imren Dinc; Marc L Pusey; Ramazan S Aygun
Journal:  IEEE Trans Nanobioscience       Date:  2016-02-29       Impact factor: 2.935

5.  Identification of the first small-molecule ligand of the neuronal receptor sortilin and structure determination of the receptor-ligand complex.

Authors:  Jacob Lauwring Andersen; Tenna Juul Schrøder; Søren Christensen; Dorthe Strandbygård; Lone Tjener Pallesen; Maria Marta García-Alai; Samsa Lindberg; Morten Langgård; Jørgen Calí Eskildsen; Laurent David; Lena Tagmose; Klaus Baek Simonsen; Philip James Maltas; Lars Christian Biilmann Rønn; Inge E M de Jong; Ibrahim John Malik; Jan Egebjerg; Jens-Jacob Karlsson; Srinivas Uppalanchi; Durga Rao Sakumudi; Pradheep Eradi; Steven P Watson; Søren Thirup
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-01-29
  5 in total

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