Literature DB >> 23832205

Expression, derivatization, crystallization and experimental phasing of an extracellular segment of the human Robo1 receptor.

Reut Barak1, Yarden Opatowsky.   

Abstract

Robo receptors participate in the orchestration of several developmental responses, most notably axonal guidance in the central nervous system. Robo1 contains five tandem Ig-like and three fibronectin type-III (FnIII) domains in its ectodomain, followed by a single-pass transmembrane segment and an intracellular region. A human Robo1 construct that includes the two extracellular membrane-proximal fibronectin (Fn) domains and the juxtamembrane linker was overexpressed in Escherichia coli and purified. Crystals were obtained using the vapour-diffusion method at 293 K and X-ray diffraction data were collected. Molecular-replacement attempts using related Fn domains as search models did not result in a solution. After introducing two additional methionine residues using PCR site-directed mutagenesis, selenomethionine-derivative crystals were produced. These crystals belonged to the primitive orthorhombic space group P212121, with unit-cell parameters a = 27.24, b = 77.64, c = 91.91 Å. Assuming the presence of a monomer in the asymmetric unit gave a crystal volume per protein weight (VM) of 1.97 Å(3) Da(-1) and a solvent content of 37.6%. Anisotropic diffraction data and a fragmented single-wavelength anomalous dispersion electron-density map, to which homology-modelled domains were docked, were obtained.

Entities:  

Keywords:  Robo1; SAD; Slit; selenomethionine

Mesh:

Substances:

Year:  2013        PMID: 23832205      PMCID: PMC3702322          DOI: 10.1107/S1744309113014863

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  23 in total

1.  Extracellular Ig domains 1 and 2 of Robo are important for ligand (Slit) binding.

Authors:  Zhe Liu; Kalpana Patel; Hannes Schmidt; William Andrews; Adrian Pini; Vasi Sundaresan
Journal:  Mol Cell Neurosci       Date:  2004-06       Impact factor: 4.314

2.  Toward the structural genomics of complexes: crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis.

Authors:  Michael Strong; Michael R Sawaya; Shuishu Wang; Martin Phillips; Duilio Cascio; David Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-11       Impact factor: 11.205

3.  Human ROBO1 is cleaved by metalloproteinases and gamma-secretase and migrates to the nucleus in cancer cells.

Authors:  Motoaki Seki; Akira Watanabe; Satoshi Enomoto; Takeshi Kawamura; Hirotaka Ito; Tatsuhiko Kodama; Takao Hamakubo; Hiroyuki Aburatani
Journal:  FEBS Lett       Date:  2010-05-13       Impact factor: 4.124

4.  Structural insights into the Slit-Robo complex.

Authors:  Cecile Morlot; Nicole M Thielens; Raimond B G Ravelli; Wieger Hemrika; Roland A Romijn; Piet Gros; Stephen Cusack; Andrew A McCarthy
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-11       Impact factor: 11.205

5.  The actin-binding protein Canoe/AF-6 forms a complex with Robo and is required for Slit-Robo signaling during axon pathfinding at the CNS midline.

Authors:  Jana Slováková; Stephan Speicher; Natalia Sánchez-Soriano; Andreas Prokop; Ana Carmena
Journal:  J Neurosci       Date:  2012-07-18       Impact factor: 6.167

6.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

Review 7.  Structural insight into Slit-Robo signalling.

Authors:  Erhard Hohenester
Journal:  Biochem Soc Trans       Date:  2008-04       Impact factor: 5.407

8.  Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin.

Authors:  G D Van Duyne; R F Standaert; P A Karplus; S L Schreiber; J Clardy
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  3 in total

Review 1.  Manipulating oligodendrocyte intrinsic regeneration mechanism to promote remyelination.

Authors:  Fabien Binamé; Lucas D Pham-Van; Dominique Bagnard
Journal:  Cell Mol Life Sci       Date:  2021-05-21       Impact factor: 9.261

2.  Expression, purification and crystallization of the phosphate-binding PstS protein from Pseudomonas aeruginosa.

Authors:  Avi Neznansky; Yarden Opatowsky
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-06-18       Impact factor: 1.056

3.  Structural History of Human SRGAP2 Proteins.

Authors:  Michael Sporny; Julia Guez-Haddad; Annett Kreusch; Sivan Shakartzi; Avi Neznansky; Alice Cross; Michail N Isupov; Britta Qualmann; Michael M Kessels; Yarden Opatowsky
Journal:  Mol Biol Evol       Date:  2017-06-01       Impact factor: 16.240

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.