Literature DB >> 23829530

Pseudogenes as regulators of biological function.

Ryan C Pink1, David R F Carter.   

Abstract

A pseudogene arises when a gene loses the ability to produce a protein, which can be due to mutation or inaccurate duplication. Previous dogma has dictated that because the pseudogene no longer produces a protein it becomes functionless and evolutionarily inert, being neither conserved nor removed. However, recent evidence has forced a re-evaluation of this view. Some pseudogenes, although not translated into protein, are at least transcribed into RNA. In some cases, these pseudogene transcripts are capable of influencing the activity of other genes that code for proteins, thereby altering expression and in turn affecting the phenotype of the organism. In the present chapter, we will define pseudogenes, describe the evidence that they are transcribed into non-coding RNAs and outline the mechanisms by which they are able to influence the machinery of the eukaryotic cell.

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Year:  2013        PMID: 23829530     DOI: 10.1042/bse0540103

Source DB:  PubMed          Journal:  Essays Biochem        ISSN: 0071-1365            Impact factor:   8.000


  17 in total

Review 1.  The Ku complex: recent advances and emerging roles outside of non-homologous end-joining.

Authors:  Sanna Abbasi; Gursimran Parmar; Rachel D Kelly; Nileeka Balasuriya; Caroline Schild-Poulter
Journal:  Cell Mol Life Sci       Date:  2021-04-15       Impact factor: 9.261

2.  Altered Expression of Long Noncoding RNAs in Blood After Ischemic Stroke and Proximity to Putative Stroke Risk Loci.

Authors:  Cheryl Dykstra-Aiello; Glen C Jickling; Bradley P Ander; Natasha Shroff; Xinhua Zhan; DaZhi Liu; Heather Hull; Miles Orantia; Boryana S Stamova; Frank R Sharp
Journal:  Stroke       Date:  2016-11-10       Impact factor: 7.914

3.  Uncovering pseudogenes and intergenic protein-coding sequences in TriTryps' genomes.

Authors:  Mayla Abrahim; Edson Machado; Fernando Alvarez-Valín; Antonio Basílio de Miranda; Marcos Catanho
Journal:  Genome Biol Evol       Date:  2022-10-08       Impact factor: 4.065

4.  Hypoxia induced changes in expression of proteins involved in iron uptake and storage in cultured lens epithelial cells.

Authors:  Małgorzata Goralska; Lloyd N Fleisher; M Christine McGahan
Journal:  Exp Eye Res       Date:  2014-05-27       Impact factor: 3.467

Review 5.  Overcoming challenges and dogmas to understand the functions of pseudogenes.

Authors:  Seth W Cheetham; Geoffrey J Faulkner; Marcel E Dinger
Journal:  Nat Rev Genet       Date:  2019-12-17       Impact factor: 53.242

6.  Epigenetic silencing of Oct4 by a complex containing SUV39H1 and Oct4 pseudogene lncRNA.

Authors:  Michele Scarola; Elisa Comisso; Rhena Pascolo; Riccardo Chiaradia; Rosa Maria Marion; Claudio Schneider; Maria A Blasco; Stefan Schoeftner; Roberta Benetti
Journal:  Nat Commun       Date:  2015-07-09       Impact factor: 14.919

7.  Nuclear and mitochondrial tRNA-lookalikes in the human genome.

Authors:  Aristeidis G Telonis; Phillipe Loher; Yohei Kirino; Isidore Rigoutsos
Journal:  Front Genet       Date:  2014-10-08       Impact factor: 4.599

8.  Novel application of luciferase assay for the in vitro functional assessment of KAL1 variants in three females with septo-optic dysplasia (SOD).

Authors:  Mark J McCabe; Youli Hu; Louise C Gregory; Carles Gaston-Massuet; Kyriaki S Alatzoglou; José W Saldanha; Angelica Gualtieri; Ajay Thankamony; Ieuan Hughes; Sharron Townshend; Juan-Pedro Martinez-Barbera; Pierre-Marc Bouloux; Mehul T Dattani
Journal:  Mol Cell Endocrinol       Date:  2015-09-14       Impact factor: 4.102

9.  A ceRNA approach may unveil unexpected contributors to deletion syndromes, the model of 5q- syndrome.

Authors:  Walter Arancio; Swonild Ilenia Genovese; Lucia Bongiovanni; Claudio Tripodo
Journal:  Oncoscience       Date:  2015-11-11

10.  The pseudogene derived from long non-coding RNA DUXAP10 promotes colorectal cancer cell growth through epigenetically silencing of p21 and PTEN.

Authors:  Yifan Lian; Yetao Xu; Chuanxing Xiao; Rui Xia; Huangbo Gong; Peng Yang; Tao Chen; Dongdong Wu; Zeling Cai; Jianping Zhang; Keming Wang
Journal:  Sci Rep       Date:  2017-08-04       Impact factor: 4.379

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