Literature DB >> 23823244

Electrodiffusion models of neurons and extracellular space using the Poisson-Nernst-Planck equations--numerical simulation of the intra- and extracellular potential for an axon model.

Jurgis Pods1, Johannes Schönke, Peter Bastian.   

Abstract

In neurophysiology, extracellular signals-as measured by local field potentials (LFP) or electroencephalography-are of great significance. Their exact biophysical basis is, however, still not fully understood. We present a three-dimensional model exploiting the cylinder symmetry of a single axon in extracellular fluid based on the Poisson-Nernst-Planck equations of electrodiffusion. The propagation of an action potential along the axonal membrane is investigated by means of numerical simulations. Special attention is paid to the Debye layer, the region with strong concentration gradients close to the membrane, which is explicitly resolved by the computational mesh. We focus on the evolution of the extracellular electric potential. A characteristic up-down-up LFP waveform in the far-field is found. Close to the membrane, the potential shows a more intricate shape. A comparison with the widely used line source approximation reveals similarities and demonstrates the strong influence of membrane currents. However, the electrodiffusion model shows another signal component stemming directly from the intracellular electric field, called the action potential echo. Depending on the neuronal configuration, this might have a significant effect on the LFP. In these situations, electrodiffusion models should be used for quantitative comparisons with experimental data.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Mesh:

Year:  2013        PMID: 23823244      PMCID: PMC3703912          DOI: 10.1016/j.bpj.2013.05.041

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Electrical interactions via the extracellular potential near cell bodies.

Authors:  G R Holt; C Koch
Journal:  J Comput Neurosci       Date:  1999 Mar-Apr       Impact factor: 1.621

2.  Modeling extracellular field potentials and the frequency-filtering properties of extracellular space.

Authors:  Claude Bédard; Helmut Kröger; Alain Destexhe
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

3.  Model of low-pass filtering of local field potentials in brain tissue.

Authors:  C Bédard; H Kröger; A Destexhe
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-05-19

4.  Macroscopic models of local field potentials and the apparent 1/f noise in brain activity.

Authors:  Claude Bédard; Alain Destexhe
Journal:  Biophys J       Date:  2009-04-08       Impact factor: 4.033

5.  Ephaptic conduction in a cardiac strand model with 3D electrodiffusion.

Authors:  Yoichiro Mori; Glenn I Fishman; Charles S Peskin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-23       Impact factor: 11.205

6.  Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier.

Authors:  Courtney L Lopreore; Thomas M Bartol; Jay S Coggan; Daniel X Keller; Gina E Sosinsky; Mark H Ellisman; Terrence J Sejnowski
Journal:  Biophys J       Date:  2008-06-13       Impact factor: 4.033

7.  Oscillatory coupling of hippocampal pyramidal cells and interneurons in the behaving Rat.

Authors:  J Csicsvari; H Hirase; A Czurkó; A Mamiya; G Buzsáki
Journal:  J Neurosci       Date:  1999-01-01       Impact factor: 6.167

8.  The dielectric properties of biological tissues: III. Parametric models for the dielectric spectrum of tissues.

Authors:  S Gabriel; R W Lau; C Gabriel
Journal:  Phys Med Biol       Date:  1996-11       Impact factor: 3.609

9.  The electrical conductivity of human cerebrospinal fluid at body temperature.

Authors:  S B Baumann; D R Wozny; S K Kelly; F M Meno
Journal:  IEEE Trans Biomed Eng       Date:  1997-03       Impact factor: 4.538

10.  Poisson-Nernst-Planck Equations for Simulating Biomolecular Diffusion-Reaction Processes I: Finite Element Solutions.

Authors:  Benzhuo Lu; Michael J Holst; J Andrew McCammon; Y C Zhou
Journal:  J Comput Phys       Date:  2010-09-20       Impact factor: 3.553

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  16 in total

1.  Intracellular Impedance Measurements Reveal Non-ohmic Properties of the Extracellular Medium around Neurons.

Authors:  Jean-Marie Gomes; Claude Bédard; Silvana Valtcheva; Matthew Nelson; Vitalia Khokhlova; Pierre Pouget; Laurent Venance; Thierry Bal; Alain Destexhe
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

2.  Sensitivity analysis of the Poisson Nernst-Planck equations: a finite element approximation for the sensitive analysis of an electrodiffusion model.

Authors:  Ibrahima Dione; Nicolas Doyon; Jean Deteix
Journal:  J Math Biol       Date:  2018-09-05       Impact factor: 2.259

3.  Electrodiffusion models of synaptic potentials in dendritic spines.

Authors:  Thibault Lagache; Krishna Jayant; Rafael Yuste
Journal:  J Comput Neurosci       Date:  2019-08-13       Impact factor: 1.621

4.  Computing Extracellular Electric Potentials from Neuronal Simulations.

Authors:  Torbjørn V Ness; Geir Halnes; Solveig Næss; Klas H Pettersen; Gaute T Einevoll
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

5.  A phenomenological computational model of the evoked action potential fitted to human cochlear implant responses.

Authors:  Ángel Ramos-de-Miguel; José M Escobar; David Greiner; Domingo Benítez; Eduardo Rodríguez; Albert Oliver; Marcos Hernández; Ángel Ramos-Macías
Journal:  PLoS Comput Biol       Date:  2022-05-27       Impact factor: 4.779

6.  An electrodiffusive neuron-extracellular-glia model for exploring the genesis of slow potentials in the brain.

Authors:  Marte J Sætra; Gaute T Einevoll; Geir Halnes
Journal:  PLoS Comput Biol       Date:  2021-07-16       Impact factor: 4.475

7.  From Maxwell's equations to the theory of current-source density analysis.

Authors:  Sergey L Gratiy; Geir Halnes; Daniel Denman; Michael J Hawrylycz; Christof Koch; Gaute T Einevoll; Costas A Anastassiou
Journal:  Eur J Neurosci       Date:  2017-03-28       Impact factor: 3.386

Review 8.  Electrodiffusion phenomena in neuroscience: a neglected companion.

Authors:  Leonid P Savtchenko; Mu Ming Poo; Dmitri A Rusakov
Journal:  Nat Rev Neurosci       Date:  2017-09-19       Impact factor: 34.870

9.  Improved Simulation of Electrodiffusion in the Node of Ranvier by Mesh Adaptation.

Authors:  Ibrahima Dione; Jean Deteix; Thomas Briffard; Eric Chamberland; Nicolas Doyon
Journal:  PLoS One       Date:  2016-08-22       Impact factor: 3.240

10.  Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue.

Authors:  Geir Halnes; Tuomo Mäki-Marttunen; Daniel Keller; Klas H Pettersen; Ole A Andreassen; Gaute T Einevoll
Journal:  PLoS Comput Biol       Date:  2016-11-07       Impact factor: 4.475

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