Literature DB >> 2382314

Invariant classification of molecular views in electron micrographs.

M Schatz1, M van Heel.   

Abstract

Biological macromolecules can exhibit many different orientations in electron microscopical preparations. In particular in vitreous-ice-embedded specimens, the number of different views can be high. Existing techniques of analysis require the alignment of the molecular views relative to one or more reference images with cross-correlation ("matched filtering") techniques and are somewhat unsatisfactory because of the high noise level and the large number of different views in such images. We here propose a method in which first rotation-, translation- and mirror-invariant functions are derived from the large set of input images. These functions are subsequently classified automatically using multivariate statistical classification techniques. The different molecular views in the images can therewith be found without bias, provided that a statistically significant number of copies of the views are present in the data set. The basic ideas are exemplified with realistic model data.

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Year:  1990        PMID: 2382314     DOI: 10.1016/0304-3991(90)90003-5

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  13 in total

1.  Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase.

Authors:  Momi Iwata; Hiromi Imamura; Elizabeth Stambouli; Chiyo Ikeda; Masatada Tamakoshi; Koji Nagata; Hisayoshi Makyio; Ben Hankamer; Jim Barber; Masasuke Yoshida; Ken Yokoyama; So Iwata
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-18       Impact factor: 11.205

2.  MAHALANOBIS DISTANCE FOR CLASS AVERAGING OF CRYO-EM IMAGES.

Authors:  Tejal Bhamre; Zhizhen Zhao; Amit Singer
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2017-06-19

3.  Cross-Validation of Data Compatibility Between Small Angle X-ray Scattering and Cryo-Electron Microscopy.

Authors:  Jin Seob Kim; Bijan Afsari; Gregory S Chirikjian
Journal:  J Comput Biol       Date:  2016-10-06       Impact factor: 1.479

4.  Rotationally invariant image representation for viewing direction classification in cryo-EM.

Authors:  Zhizhen Zhao; Amit Singer
Journal:  J Struct Biol       Date:  2014-03-12       Impact factor: 2.867

5.  A clustering approach to multireference alignment of single-particle projections in electron microscopy.

Authors:  C O S Sorzano; J R Bilbao-Castro; Y Shkolnisky; M Alcorlo; R Melero; G Caffarena-Fernández; M Li; G Xu; R Marabini; J M Carazo
Journal:  J Struct Biol       Date:  2010-03-31       Impact factor: 2.867

6.  Pattern recognition and classification of images of biological macromolecules using artificial neural networks.

Authors:  R Marabini; J M Carazo
Journal:  Biophys J       Date:  1994-06       Impact factor: 4.033

7.  Image restoration in cryo-electron microscopy.

Authors:  Pawel A Penczek
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

8.  Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes.

Authors:  Hanspeter Winkler; Ping Zhu; Jun Liu; Feng Ye; Kenneth H Roux; Kenneth A Taylor
Journal:  J Struct Biol       Date:  2008-11-08       Impact factor: 2.867

9.  Structure of the cyanobacterial Magnesium Chelatase H subunit determined by single particle reconstruction and small-angle X-ray scattering.

Authors:  Pu Qian; Christopher J Marklew; Joanne Viney; Paul A Davison; Amanda A Brindley; Christopher Söderberg; Salam Al-Karadaghi; Per A Bullough; J Günter Grossmann; C Neil Hunter
Journal:  J Biol Chem       Date:  2011-12-15       Impact factor: 5.157

Review 10.  Structural analysis of macromolecular assemblies by electron microscopy.

Authors:  E V Orlova; H R Saibil
Journal:  Chem Rev       Date:  2011-09-16       Impact factor: 60.622

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