Literature DB >> 23819262

Finding optimal control policy in probabilistic Boolean Networks with hard constraints by using integer programming and dynamic programming.

Xi Chen1, Tatsuya Akutsu, Takeyuki Tamura, Wai-Ki Ching.   

Abstract

Boolean Networks (BNs) and Probabilistic Boolean Networks (PBNs) are studied in this paper from the viewpoint of control problems. For BN CONTROL, by applying external control, we propose to derive the network to the desired state within a few time steps. For PBN CONTROL, we propose to find a control sequence such that the network will terminate in the desired state with a maximum probability. Also, we propose to minimise the maximum cost of the terminal state to which the network will enter. We also present a hardness result suggesting that PBN CONTROL is harder than BN CONTROL.

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Year:  2013        PMID: 23819262     DOI: 10.1504/ijdmb.2013.053306

Source DB:  PubMed          Journal:  Int J Data Min Bioinform        ISSN: 1748-5673            Impact factor:   0.667


  4 in total

1.  Optimal control of gene regulatory networks with effectiveness of multiple drugs: a Boolean network approach.

Authors:  Koichi Kobayashi; Kunihiko Hiraishi
Journal:  Biomed Res Int       Date:  2013-08-21       Impact factor: 3.411

2.  On control of singleton attractors in multiple Boolean networks: integer programming-based method.

Authors:  Yushan Qiu; Takeyuki Tamura; Wai-Ki Ching; Tatsuya Akutsu
Journal:  BMC Syst Biol       Date:  2014-01-24

3.  On optimal control policy for probabilistic Boolean network: a state reduction approach.

Authors:  Xi Chen; Hao Jiang; Yushan Qiu; Wai-Ki Ching
Journal:  BMC Syst Biol       Date:  2012-07-16

4.  Verification and optimal control of context-sensitive probabilistic Boolean networks using model checking and polynomial optimization.

Authors:  Koichi Kobayashi; Kunihiko Hiraishi
Journal:  ScientificWorldJournal       Date:  2014-01-23
  4 in total

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