Literature DB >> 23816812

Single-cell lysis for visual analysis by electron microscopy.

Simon Kemmerling1, Stefan A Arnold1, Benjamin A Bircher1, Nora Sauter1, Carlos Escobedo2, Gregor Dernick3, Andreas Hierlemann2, Henning Stahlberg1, Thomas Braun4.   

Abstract

The stochastic nature of biological systems makes the study of individual cells a necessity in systems biology. Yet, handling and disruption of single cells and the analysis of the relatively low concentrations of their protein components still challenges available techniques. Transmission electron microscopy (TEM) allows for the analysis of proteins at the single-molecule level. Here, we present a system for single-cell lysis under light microscopy observation, followed by rapid uptake of the cell lysate. Eukaryotic cells were grown on conductively coated glass slides and observed by light microscopy. A custom-designed microcapillary electrode was used to target and lyse individual cells with electrical pulses. Nanoliter volumes were subsequently aspirated into the microcapillary and dispensed onto an electron microscopy grid for TEM inspection. We show, that the cell lysis and preparation method conserves protein structures well and is suitable for visual analysis by TEM.
Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.

Keywords:  AM; BHK; ECL; EM; ET; Electron microscopy; FEA; FS; HRP; ID; ITO; MS; Microfluidics; OD; OM; PDMS; PEEK; RPPA; SNR; Single-cell analysis; Single-cell lysis; Systems biology; TEM; UA; ammonium molybdate; baby hamster kidney; ddH(2)O; double-distilled water; electron microscopy; electron tomography; enhanced chemiluminescence; finite element analysis; fused silica; horseradish peroxidase; indium tin oxide; inner diameter; mass spectrometry; optical microscope; outer diameter; poly(dimethylsiloxane); poly(ether–ether–ketone); reverse-phase protein arrays; signal-to-noise ratio; transmission electron microscopy; uranyl acetate

Mesh:

Year:  2013        PMID: 23816812     DOI: 10.1016/j.jsb.2013.06.012

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  9 in total

Review 1.  Two promising future developments of cryo-EM: capturing short-lived states and mapping a continuum of states of a macromolecule.

Authors:  Bo Chen; Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-10-31       Impact factor: 1.571

Review 2.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

3.  A convolutional autoencoder approach for mining features in cellular electron cryo-tomograms and weakly supervised coarse segmentation.

Authors:  Xiangrui Zeng; Miguel Ricardo Leung; Tzviya Zeev-Ben-Mordehai; Min Xu
Journal:  J Struct Biol       Date:  2017-12-28       Impact factor: 2.867

4.  openBEB: open biological experiment browser for correlative measurements.

Authors:  Chandrasekhar Ramakrishnan; Andrej Bieri; Nora Sauter; Sophie Roizard; Philippe Ringler; Shirley A Müller; Kenneth N Goldie; Kaloyan Enimanev; Henning Stahlberg; Bernd Rinn; Thomas Braun
Journal:  BMC Bioinformatics       Date:  2014-03-26       Impact factor: 3.169

5.  Electron microscopy snapshots of single particles from single cells.

Authors:  Xiunan Yi; Eric J Verbeke; Yiran Chang; Daniel J Dickinson; David W Taylor
Journal:  J Biol Chem       Date:  2018-12-12       Impact factor: 5.157

6.  Microfluidic protein isolation and sample preparation for high-resolution cryo-EM.

Authors:  Claudio Schmidli; Stefan Albiez; Luca Rima; Ricardo Righetto; Inayatulla Mohammed; Paolo Oliva; Lubomir Kovacik; Henning Stahlberg; Thomas Braun
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-10       Impact factor: 11.205

Review 7.  Interfacing microfluidics with information-rich detection systems for cells, bioparticles, and molecules.

Authors:  Jared P Smithers; Mark A Hayes
Journal:  Anal Bioanal Chem       Date:  2022-04-07       Impact factor: 4.478

8.  Miniaturized Sample Preparation for Transmission Electron Microscopy.

Authors:  Claudio Schmidli; Luca Rima; Stefan A Arnold; Thomas Stohler; Anastasia Syntychaki; Andrej Bieri; Stefan Albiez; Kenneth N Goldie; Mohamed Chami; Henning Stahlberg; Thomas Braun
Journal:  J Vis Exp       Date:  2018-07-27       Impact factor: 1.355

9.  Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device.

Authors:  John L Rubinstein; Hui Guo; Zev A Ripstein; Ali Haydaroglu; Aaron Au; Christopher M Yip; Justin M Di Trani; Samir Benlekbir; Timothy Kwok
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-11-22       Impact factor: 7.652

  9 in total

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