Literature DB >> 23812890

Spatial pattern in Antarctica: what can we learn from Antarctic bacterial isolates?

Chun Wie Chong1, Yuh Shan Goh, Peter Convey, David Pearce, Irene Kit Ping Tan.   

Abstract

A range of small- to moderate-scale studies of patterns in bacterial biodiversity have been conducted in Antarctica over the last two decades, most suggesting strong correlations between the described bacterial communities and elements of local environmental heterogeneity. However, very few of these studies have advanced interpretations in terms of spatially associated patterns, despite increasing evidence of patterns in bacterial biogeography globally. This is likely to be a consequence of restricted sampling coverage, with most studies to date focusing only on a few localities within a specific Antarctic region. Clearly, there is now a need for synthesis over a much larger spatial to consolidate the available data. In this study, we collated Antarctic bacterial culture identities based on the 16S rRNA gene information available in the literature and the GenBank database (n > 2,000 sequences). In contrast to some recent evidence for a distinct Antarctic microbiome, our phylogenetic comparisons show that a majority (~75 %) of Antarctic bacterial isolates were highly similar (≥99 % sequence similarity) to those retrieved from tropical and temperate regions, suggesting widespread distribution of eurythermal mesophiles in Antarctic environments. However, across different Antarctic regions, the dominant bacterial genera exhibit some spatially distinct diversity patterns analogous to those recently proposed for Antarctic terrestrial macroorganisms. Taken together, our results highlight the threat of cross-regional homogenisation in Antarctic biodiversity, and the imperative to include microbiota within the framework of biosecurity measures for Antarctica.

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Year:  2013        PMID: 23812890     DOI: 10.1007/s00792-013-0555-3

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  65 in total

1.  ARB: a software environment for sequence data.

Authors:  Wolfgang Ludwig; Oliver Strunk; Ralf Westram; Lothar Richter; Harald Meier; Arno Buchner; Tina Lai; Susanne Steppi; Gangolf Jobb; Wolfram Förster; Igor Brettske; Stefan Gerber; Anton W Ginhart; Oliver Gross; Silke Grumann; Stefan Hermann; Ralf Jost; Andreas König; Thomas Liss; Ralph Lüssmann; Michael May; Björn Nonhoff; Boris Reichel; Robert Strehlow; Alexandros Stamatakis; Norbert Stuckmann; Alexander Vilbig; Michael Lenke; Thomas Ludwig; Arndt Bode; Karl-Heinz Schleifer
Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

2.  Biogeographical distribution and ecological ranges of benthic cyanobacteria in East Antarctic lakes.

Authors:  Arnaud Taton; Stana Grubisic; Pierre Balthasart; Dominic A Hodgson; Johanna Laybourn-Parry; Annick Wilmotte
Journal:  FEMS Microbiol Ecol       Date:  2006-08       Impact factor: 4.194

3.  Bacterial diversity from benthic mats of Antarctic lakes as a source of new bioactive metabolites.

Authors:  Jose Luis Rojas; Jesús Martín; José Rubén Tormo; Francisca Vicente; Mara Brunati; Ismaela Ciciliato; Daniele Losi; Stefanie Van Trappen; Joris Mergaert; Jean Swings; Flavia Marinelli; Olga Genilloud
Journal:  Mar Genomics       Date:  2009-04-08       Impact factor: 1.710

4.  Abiotic factors influence microbial diversity in permanently cold soil horizons of a maritime-associated Antarctic Dry Valley.

Authors:  Francesca Stomeo; Thulani P Makhalanyane; Angel Valverde; Stephen B Pointing; Mark I Stevens; Craig S Cary; Marla I Tuffin; Don A Cowan
Journal:  FEMS Microbiol Ecol       Date:  2012-04-13       Impact factor: 4.194

5.  16S rDNA diversity of cultured and uncultured prokaryotes of a mat sample from Lake Fryxell, McMurdo Dry Valleys, Antarctica.

Authors:  E Brambilla; H Hippe; A Hagelstein; B J Tindall; E Stackebrandt
Journal:  Extremophiles       Date:  2001-02       Impact factor: 2.395

6.  Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic.

Authors:  Hana Yi; Huyn-Myung Oh; Jung-Hyun Lee; Sang-Jin Kim; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2005-03       Impact factor: 2.747

7.  Characterization of several Psychrobacter strains isolated from Antarctic environments and description of Psychrobacter luti sp. nov. and Psychrobacter fozii sp. nov.

Authors:  Núria Bozal; M Jesús Montes; Encarna Tudela; Jesús Guinea
Journal:  Int J Syst Evol Microbiol       Date:  2003-07       Impact factor: 2.747

Review 8.  Bioremediation of hydrocarbon-contaminated polar soils.

Authors:  Jackie Aislabie; David J Saul; Julia M Foght
Journal:  Extremophiles       Date:  2006-03-03       Impact factor: 2.395

9.  Pseudomonas, the dominant polycyclic aromatic hydrocarbon-degrading bacteria isolated from Antarctic soils and the role of large plasmids in horizontal gene transfer.

Authors:  Yingfei Ma; Lin Wang; Zongze Shao
Journal:  Environ Microbiol       Date:  2006-03       Impact factor: 5.491

10.  Metagenomic analysis of a southern maritime antarctic soil.

Authors:  David A Pearce; Kevin K Newsham; Michael A S Thorne; Leo Calvo-Bado; Martin Krsek; Paris Laskaris; Andy Hodson; Elizabeth M Wellington
Journal:  Front Microbiol       Date:  2012-12-05       Impact factor: 5.640

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  4 in total

Review 1.  Emerging spatial patterns in Antarctic prokaryotes.

Authors:  Chun-Wie Chong; David A Pearce; Peter Convey
Journal:  Front Microbiol       Date:  2015-09-30       Impact factor: 5.640

2.  Diversity structure of culturable bacteria isolated from the Fildes Peninsula (King George Island, Antarctica): A phylogenetic analysis perspective.

Authors:  Gerardo González-Rocha; Gabriel Muñoz-Cartes; Cristian B Canales-Aguirre; Celia A Lima; Mariana Domínguez-Yévenes; Helia Bello-Toledo; Cristián E Hernández
Journal:  PLoS One       Date:  2017-06-20       Impact factor: 3.240

3.  Evidence of adaptation, niche separation and microevolution within the genus Polaromonas on Arctic and Antarctic glacial surfaces.

Authors:  Jan Gawor; Jakub Grzesiak; Joanna Sasin-Kurowska; Piotr Borsuk; Robert Gromadka; Dorota Górniak; Aleksander Świątecki; Tamara Aleksandrzak-Piekarczyk; Marek K Zdanowski
Journal:  Extremophiles       Date:  2016-04-20       Impact factor: 2.395

4.  Prokaryotic Diversity and Composition of Sediments From Prydz Bay, the Antarctic Peninsula Region, and the Ross Sea, Southern Ocean.

Authors:  Jiang Li; Xiaoqian Gu; Yuanyuan Gui
Journal:  Front Microbiol       Date:  2020-04-28       Impact factor: 5.640

  4 in total

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