Literature DB >> 23812812

A novel retron of Vibrio parahaemolyticus is closely related to retron-Vc95 of Vibrio cholerae.

Toshi Shimamoto1, Ashraf M Ahmed, Tadashi Shimamoto.   

Abstract

Some bacteria produce a satellite RNA-DNA complex termed msDNA, multicopy single-stranded DNA. In this report, msDNA from Vibrio parahaemolyticus, a cause of acute gastroenteritis, was identified and named msDNA-Vp96. The retron element containing the ret gene, encoding the reverse transcriptase (RT) that is responsible for msDNA production, was cloned and characterized. Comparison of msDNA-Vp96 and msDNA-Vc95, from Vibrio cholerae, showed a high level of sequence similarity. We exchanged the two ret genes to examine whether msDNA was produced by the RT from different sources. We found that RT-Vp96 of V. parahaemolyticus was able to synthesize msDNA-Vc95 of V. cholerae and vice versa. To the best of our knowledge, this is the first report that RT from different bacterial species can synthesize msDNA.

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Year:  2013        PMID: 23812812     DOI: 10.1007/s12275-013-2715-7

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  26 in total

1.  Structure and biosynthesis of unbranched multicopy single-stranded DNA by reverse transcriptase in a clinical Escherichia coli isolate.

Authors:  D Lim
Journal:  Mol Microbiol       Date:  1992-12       Impact factor: 3.501

2.  Two novel retron elements are replaced with retron-Vc95 in Vibrio cholerae.

Authors:  Kumiko Inouye; Saori Tanimoto; Maki Kamimoto; Toshi Shimamoto; Tadashi Shimamoto
Journal:  Microbiol Immunol       Date:  2011-07       Impact factor: 1.955

3.  A novel retron that produces RNA-less msDNA in Escherichia coli using reverse transcriptase.

Authors:  T M Lima; D Lim
Journal:  Plasmid       Date:  1997       Impact factor: 3.466

4.  Enhancement of frame-shift mutation by the overproduction of msDNA in Escherichia coli.

Authors:  J R Mao; S Inouye; M Inouye
Journal:  FEMS Microbiol Lett       Date:  1996-10-15       Impact factor: 2.742

5.  Highly specific recognition of primer RNA structures for 2'-OH priming reaction by bacterial reverse transcriptases.

Authors:  S Inouye; M Y Hsu; A Xu; M Inouye
Journal:  J Biol Chem       Date:  1999-10-29       Impact factor: 5.157

6.  Multicopy single-stranded DNAs with mismatched base pairs are mutagenic in Escherichia coli.

Authors:  W K Maas; C Wang; T Lima; G Zubay; D Lim
Journal:  Mol Microbiol       Date:  1994-11       Impact factor: 3.501

7.  Distribution of msDNAs among serotypes of enteropathogenic Escherichia coli strains.

Authors:  D Lim; T A Gomes; W K Maas
Journal:  Mol Microbiol       Date:  1990-10       Impact factor: 3.501

8.  Diversity of retron elements in a population of rhizobia and other gram-negative bacteria.

Authors:  S A Rice; J Bieber; J Y Chun; G Stacey; B C Lampson
Journal:  J Bacteriol       Date:  1993-07       Impact factor: 3.490

9.  Reverse transcriptases from bacterial retrons require specific secondary structures at the 5'-end of the template for the cDNA priming reaction.

Authors:  T Shimamoto; M Y Hsu; S Inouye; M Inouye
Journal:  J Biol Chem       Date:  1993-02-05       Impact factor: 5.157

10.  DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae.

Authors:  J F Heidelberg; J A Eisen; W C Nelson; R A Clayton; M L Gwinn; R J Dodson; D H Haft; E K Hickey; J D Peterson; L Umayam; S R Gill; K E Nelson; T D Read; H Tettelin; D Richardson; M D Ermolaeva; J Vamathevan; S Bass; H Qin; I Dragoi; P Sellers; L McDonald; T Utterback; R D Fleishmann; W C Nierman; O White; S L Salzberg; H O Smith; R R Colwell; J J Mekalanos; J C Venter; C M Fraser
Journal:  Nature       Date:  2000-08-03       Impact factor: 49.962

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  1 in total

Review 1.  Retrons and their applications in genome engineering.

Authors:  Anna J Simon; Andrew D Ellington; Ilya J Finkelstein
Journal:  Nucleic Acids Res       Date:  2019-12-02       Impact factor: 16.971

  1 in total

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