Literature DB >> 23810782

Modular organization of cancer signaling networks is associated with patient survivability.

Kazuhiro Takemoto1, Kaori Kihara.   

Abstract

Molecular signaling networks are believed to determine cancer robustness. Although cancer patient survivability was reported to correlate with the heterogeneous connectivity of the signaling networks inspired by theoretical studies on the increase of network robustness due to the heterogeneous connectivity, other theoretical and data analytic studies suggest an alternative explanation: the impact of modular organization of networks on biological robustness or adaptation to changing environments. In this study, thus, we evaluate whether the modularity-robustness hypothesis is applicable to cancer using network analysis. We focus on 14 specific cancer types whose molecular signaling networks are available in databases, and show that modular organization of cancer signaling networks is associated with the patient survival rate. In particular, the cancers with less modular signaling networks are more curable. This result is consistent with a prediction from the modularity-robustness hypothesis. Furthermore, we show that the network modularity is a better descriptor of the patient survival rate than the heterogeneous connectivity. However, these results do not contradict the importance of the heterogeneous connectivity. Rather, they provide new and different insights into the relationship between cellular networks and cancer behaviors. Despite several limitations of data analysis, these findings enhance our understanding of adaptive and evolutionary mechanisms of cancer cells. Crown
Copyright © 2013. Published by Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  Cancer; Evolvability; Modularity; Networkanalysis; Robustness

Mesh:

Year:  2013        PMID: 23810782     DOI: 10.1016/j.biosystems.2013.06.003

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  10 in total

1.  MORO: a Cytoscape app for relationship analysis between modularity and robustness in large-scale biological networks.

Authors:  Cong-Doan Truong; Tien-Dzung Tran; Yung-Keun Kwon
Journal:  BMC Syst Biol       Date:  2016-12-23

2.  Thermodynamic measures of cancer: Gibbs free energy and entropy of protein-protein interactions.

Authors:  Edward A Rietman; John Platig; Jack A Tuszynski; Giannoula Lakka Klement
Journal:  J Biol Phys       Date:  2016-03-24       Impact factor: 1.365

3.  Hierarchical closeness-based properties reveal cancer survivability and biomarker genes in molecular signaling networks.

Authors:  Tien-Dzung Tran; Yung-Keun Kwon
Journal:  PLoS One       Date:  2018-06-18       Impact factor: 3.240

4.  Design principles for cancer therapy guided by changes in complexity of protein-protein interaction networks.

Authors:  Sebastian Benzekry; Jack A Tuszynski; Edward A Rietman; Giannoula Lakka Klement
Journal:  Biol Direct       Date:  2015-05-28       Impact factor: 4.540

5.  Detection of composite communities in multiplex biological networks.

Authors:  Laura Bennett; Aristotelis Kittas; Gareth Muirhead; Lazaros G Papageorgiou; Sophia Tsoka
Journal:  Sci Rep       Date:  2015-05-27       Impact factor: 4.379

6.  Human Impacts and Climate Change Influence Nestedness and Modularity in Food-Web and Mutualistic Networks.

Authors:  Kazuhiro Takemoto; Kosuke Kajihara
Journal:  PLoS One       Date:  2016-06-20       Impact factor: 3.240

7.  Importance of metabolic rate to the relationship between the number of genes in a functional category and body size in Peto's paradox for cancer.

Authors:  Kazuhiro Takemoto; Masato Ii; Satoshi S Nishizuka
Journal:  R Soc Open Sci       Date:  2016-09-07       Impact factor: 2.963

8.  Topological robustness analysis of protein interaction networks reveals key targets for overcoming chemotherapy resistance in glioma.

Authors:  Hátylas Azevedo; Carlos Alberto Moreira-Filho
Journal:  Sci Rep       Date:  2015-11-19       Impact factor: 4.379

9.  Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma.

Authors:  Laura Bennett; Matthew Howell; Danish Memon; Chris Smowton; Cong Zhou; Crispin J Miller
Journal:  Sci Rep       Date:  2018-10-04       Impact factor: 4.379

10.  Gene co-expression and histone modification signatures are associated with melanoma progression, epithelial-to-mesenchymal transition, and metastasis.

Authors:  Hátylas Azevedo; Guilherme Cavalcante Pessoa; Francisca Nathália de Luna Vitorino; Jérémie Nsengimana; Julia Newton-Bishop; Eduardo Moraes Reis; Júlia Pinheiro Chagas da Cunha; Miriam Galvonas Jasiulionis
Journal:  Clin Epigenetics       Date:  2020-08-24       Impact factor: 6.551

  10 in total

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