Literature DB >> 23805854

A conifer genome spruces up plant phylogenomics.

Pamela S Soltis, Douglas E Soltis.   

Abstract

The Norway spruce genome provides key insights into the evolution of plant genomes, leading to testable new hypotheses about conifer, gymnosperm, and vascular plant evolution.

Entities:  

Mesh：

Year:  2013        PMID： 23805854      PMCID： PMC3706884          DOI： 10.1186/gb-2013-14-6-122

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  9 in total

1.  Ancestral polyploidy in seed plants and angiosperms.

Authors:  Yuannian Jiao; Norman J Wickett; Saravanaraj Ayyampalayam; André S Chanderbali; Lena Landherr; Paula E Ralph; Lynn P Tomsho; Yi Hu; Haiying Liang; Pamela S Soltis; Douglas E Soltis; Sandra W Clifton; Scott E Schlarbaum; Stephan C Schuster; Hong Ma; Jim Leebens-Mack; Claude W dePamphilis
Journal:  Nature       Date:  2011-04-10       Impact factor: 49.962

2.  Evolution of DNA amounts across land plants (embryophyta).

Authors:  I J Leitch; D E Soltis; P S Soltis; M D Bennett
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

3.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

4.  Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

Authors:  Andrew H Paterson; Jonathan F Wendel; Heidrun Gundlach; Hui Guo; Jerry Jenkins; Dianchuan Jin; Danny Llewellyn; Kurtis C Showmaker; Shengqiang Shu; Joshua Udall; Mi-jeong Yoo; Robert Byers; Wei Chen; Adi Doron-Faigenboim; Mary V Duke; Lei Gong; Jane Grimwood; Corrinne Grover; Kara Grupp; Guanjing Hu; Tae-ho Lee; Jingping Li; Lifeng Lin; Tao Liu; Barry S Marler; Justin T Page; Alison W Roberts; Elisson Romanel; William S Sanders; Emmanuel Szadkowski; Xu Tan; Haibao Tang; Chunming Xu; Jinpeng Wang; Zining Wang; Dong Zhang; Lan Zhang; Hamid Ashrafi; Frank Bedon; John E Bowers; Curt L Brubaker; Peng W Chee; Sayan Das; Alan R Gingle; Candace H Haigler; David Harker; Lucia V Hoffmann; Ran Hovav; Donald C Jones; Cornelia Lemke; Shahid Mansoor; Mehboob ur Rahman; Lisa N Rainville; Aditi Rambani; Umesh K Reddy; Jun-kang Rong; Yehoshua Saranga; Brian E Scheffler; Jodi A Scheffler; David M Stelly; Barbara A Triplett; Allen Van Deynze; Maite F S Vaslin; Vijay N Waghmare; Sally A Walford; Robert J Wright; Essam A Zaki; Tianzhen Zhang; Elizabeth S Dennis; Klaus F X Mayer; Daniel G Peterson; Daniel S Rokhsar; Xiyin Wang; Jeremy Schmutz
Journal:  Nature       Date:  2012-12-20       Impact factor: 49.962

5.  The Norway spruce genome sequence and conifer genome evolution.

Authors:  Björn Nystedt; Nathaniel R Street; Anna Wetterbom; Andrea Zuccolo; Yao-Cheng Lin; Douglas G Scofield; Francesco Vezzi; Nicolas Delhomme; Stefania Giacomello; Andrey Alexeyenko; Riccardo Vicedomini; Kristoffer Sahlin; Ellen Sherwood; Malin Elfstrand; Lydia Gramzow; Kristina Holmberg; Jimmie Hällman; Olivier Keech; Lisa Klasson; Maxim Koriabine; Melis Kucukoglu; Max Käller; Johannes Luthman; Fredrik Lysholm; Totte Niittylä; Ake Olson; Nemanja Rilakovic; Carol Ritland; Josep A Rosselló; Juliana Sena; Thomas Svensson; Carlos Talavera-López; Günter Theißen; Hannele Tuominen; Kevin Vanneste; Zhi-Qiang Wu; Bo Zhang; Philipp Zerbe; Lars Arvestad; Rishikesh Bhalerao; Joerg Bohlmann; Jean Bousquet; Rosario Garcia Gil; Torgeir R Hvidsten; Pieter de Jong; John MacKay; Michele Morgante; Kermit Ritland; Björn Sundberg; Stacey Lee Thompson; Yves Van de Peer; Björn Andersson; Ove Nilsson; Pär K Ingvarsson; Joakim Lundeberg; Stefan Jansson
Journal:  Nature       Date:  2013-05-22       Impact factor: 49.962

6.  A genome triplication associated with early diversification of the core eudicots.

Authors:  Yuannian Jiao; Jim Leebens-Mack; Saravanaraj Ayyampalayam; John E Bowers; Michael R McKain; Joel McNeal; Megan Rolf; Daniel R Ruzicka; Eric Wafula; Norman J Wickett; Xiaolei Wu; Yong Zhang; Jun Wang; Yeting Zhang; Eric J Carpenter; Michael K Deyholos; Toni M Kutchan; Andre S Chanderbali; Pamela S Soltis; Dennis W Stevenson; Richard McCombie; J Chris Pires; Gane Ka-Shu Wong; Douglas E Soltis; Claude W Depamphilis
Journal:  Genome Biol       Date:  2012-01-26       Impact factor: 13.583

7.  Evolution of genome size and complexity in Pinus.

Authors:  Alison M Morse; Daniel G Peterson; M Nurul Islam-Faridi; Katherine E Smith; Zenaida Magbanua; Saul A Garcia; Thomas L Kubisiak; Henry V Amerson; John E Carlson; C Dana Nelson; John M Davis
Journal:  PLoS One       Date:  2009-02-05       Impact factor: 3.240

8.  Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.).

Authors:  Ray Ming; Robert VanBuren; Yanling Liu; Mei Yang; Yuepeng Han; Lei-Ting Li; Qiong Zhang; Min-Jeong Kim; Michael C Schatz; Michael Campbell; Jingping Li; John E Bowers; Haibao Tang; Eric Lyons; Ann A Ferguson; Giuseppe Narzisi; David R Nelson; Crysten E Blaby-Haas; Andrea R Gschwend; Yuannian Jiao; Joshua P Der; Fanchang Zeng; Jennifer Han; Xiang Jia Min; Karen A Hudson; Ratnesh Singh; Aleel K Grennan; Steven J Karpowicz; Jennifer R Watling; Kikukatsu Ito; Sharon A Robinson; Matthew E Hudson; Qingyi Yu; Todd C Mockler; Andrew Carroll; Yun Zheng; Ramanjulu Sunkar; Ruizong Jia; Nancy Chen; Jie Arro; Ching Man Wai; Eric Wafula; Ashley Spence; Yanni Han; Liming Xu; Jisen Zhang; Rhiannon Peery; Miranda J Haus; Wenwei Xiong; James A Walsh; Jun Wu; Ming-Li Wang; Yun J Zhu; Robert E Paull; Anne B Britt; Chunguang Du; Stephen R Downie; Mary A Schuler; Todd P Michael; Steve P Long; Donald R Ort; J William Schopf; David R Gang; Ning Jiang; Mark Yandell; Claude W dePamphilis; Sabeeha S Merchant; Andrew H Paterson; Bob B Buchanan; Shaohua Li; Jane Shen-Miller
Journal:  Genome Biol       Date:  2013-05-10       Impact factor: 13.583

9.  Architecture and evolution of a minute plant genome.

Authors:  Enrique Ibarra-Laclette; Eric Lyons; Gustavo Hernández-Guzmán; Claudia Anahí Pérez-Torres; Lorenzo Carretero-Paulet; Tien-Hao Chang; Tianying Lan; Andreanna J Welch; María Jazmín Abraham Juárez; June Simpson; Araceli Fernández-Cortés; Mario Arteaga-Vázquez; Elsa Góngora-Castillo; Gustavo Acevedo-Hernández; Stephan C Schuster; Heinz Himmelbauer; André E Minoche; Sen Xu; Michael Lynch; Araceli Oropeza-Aburto; Sergio Alan Cervantes-Pérez; María de Jesús Ortega-Estrada; Jacob Israel Cervantes-Luevano; Todd P Michael; Todd Mockler; Douglas Bryant; Alfredo Herrera-Estrella; Victor A Albert; Luis Herrera-Estrella
Journal:  Nature       Date:  2013-05-12       Impact factor: 49.962
  9 in total
  8 in total

1.  Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum.

Authors:  Kevin Vanneste; Lieven Sterck; Alexander Andrew Myburg; Yves Van de Peer; Eshchar Mizrachi
Journal:  Plant Cell       Date:  2015-05-22       Impact factor: 11.277

Review 2.  Insights into conifer giga-genomes.

Authors:  Amanda R De La Torre; Inanc Birol; Jean Bousquet; Pär K Ingvarsson; Stefan Jansson; Steven J M Jones; Christopher I Keeling; John MacKay; Ove Nilsson; Kermit Ritland; Nathaniel Street; Alvin Yanchuk; Philipp Zerbe; Jörg Bohlmann
Journal:  Plant Physiol       Date:  2014-10-27       Impact factor: 8.340

3.  Evaluation of the diversity and phylogenetic implications of NAC transcription factor members of four reference species from the different embryophytic plant groups.

Authors:  Rakhi Chakraborty; Swarnendu Roy
Journal:  Physiol Mol Biol Plants       Date:  2018-07-25

Review 4.  Between two fern genomes.

Authors:  Emily B Sessa; Jo Ann Banks; Michael S Barker; Joshua P Der; Aaron M Duffy; Sean W Graham; Mitsuyasu Hasebe; Jane Langdale; Fay-Wei Li; D Blaine Marchant; Kathleen M Pryer; Carl J Rothfels; Stanley J Roux; Mari L Salmi; Erin M Sigel; Douglas E Soltis; Pamela S Soltis; Dennis W Stevenson; Paul G Wolf
Journal:  Gigascience       Date:  2014-09-25       Impact factor: 6.524

5.  Plastome Phylogenomic and Biogeographical Study on Thuja (Cupressaceae).

Authors:  Kole F Adelalu; Xu Zhang; Xiaojian Qu; Jacob B Landis; Jun Shen; Yanxia Sun; Aiping Meng; Hang Sun; Hengchang Wang
Journal:  Biomed Res Int       Date:  2020-06-26       Impact factor: 3.411

6.  Comparative Genomics of NAC Transcriptional Factors in Angiosperms: Implications for the Adaptation and Diversification of Flowering Plants.

Authors:  Alejandro Pereira-Santana; Luis David Alcaraz; Enrique Castaño; Lenin Sanchez-Calderon; Felipe Sanchez-Teyer; Luis Rodriguez-Zapata
Journal:  PLoS One       Date:  2015-11-16       Impact factor: 3.240

7.  Comparative Transcriptomics Among Four White Pine Species.

Authors:  Ethan A G Baker; Jill L Wegrzyn; Uzay U Sezen; Taylor Falk; Patricia E Maloney; Detlev R Vogler; Annette Delfino-Mix; Camille Jensen; Jeffry Mitton; Jessica Wright; Brian Knaus; Hardeep Rai; Richard Cronn; Daniel Gonzalez-Ibeas; Hans A Vasquez-Gross; Randi A Famula; Jun-Jun Liu; Lara M Kueppers; David B Neale
Journal:  G3 (Bethesda)       Date:  2018-05-04       Impact factor: 3.154

8.  The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly.

Authors:  D Blaine Marchant; Emily B Sessa; Paul G Wolf; Kweon Heo; W Brad Barbazuk; Pamela S Soltis; Douglas E Soltis
Journal:  Sci Rep       Date:  2019-12-03       Impact factor: 4.379
  8 in total

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