Literature DB >> 23804380

Algorithm-based prediction of HIV-1 subtype D coreceptor use.

Julia Dina1, Stephanie Raymond, Anne Maillard, Helene Le Guillou-Guillemette, Audrey Rodalec, Agnes Beby-Defaux, Genevieve Giraudeau, Sophie Vallet, Thomas Mourez, Christopher Payan, Astrid Vabret, Annick Ruffault, Virginie Ferre, Jacques Izopet, Jean-Christophe Plantier.   

Abstract

We compared the coreceptor tropism-predicting performance of a specific genotypic algorithm for HIV-1 subtype D and that of the geno2pheno algorithm with different cutoffs. The D-specific algorithm and geno2pheno with a false-positivity rate cutoff of 2.5% had the same concordance with the phenotypic determination. The geno2pheno algorithm with a false-positivity rate cutoff of 2.5%, more sensitive but slightly less specific, seems to be an appropriate alternative.

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Year:  2013        PMID： 23804380      PMCID： PMC3754628          DOI： 10.1128/JCM.00798-13

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  13 in total

1.  Evaluation of the genotypic prediction of HIV-1 coreceptor use versus a phenotypic assay and correlation with the virological response to maraviroc: the ANRS GenoTropism study.

Authors:  Patricia Recordon-Pinson; Cathia Soulié; Philippe Flandre; Diane Descamps; Mouna Lazrek; Charlotte Charpentier; Brigitte Montes; Mary-Anne Trabaud; Jacqueline Cottalorda; Véronique Schneider; Laurence Morand-Joubert; Catherine Tamalet; Delphine Desbois; Muriel Macé; Virginie Ferré; Astrid Vabret; Annick Ruffault; Coralie Pallier; Stéphanie Raymond; Jacques Izopet; Jacques Reynes; Anne-Geneviève Marcelin; Bernard Masquelier
Journal:  Antimicrob Agents Chemother       Date:  2010-06-07       Impact factor: 5.191

2.  Genotypic prediction of human immunodeficiency virus type 1 CRF02-AG tropism.

Authors:  Stéphanie Raymond; Pierre Delobel; Maud Mavigner; Michelle Cazabat; Corinne Souyris; Stéphanie Encinas; Karine Sandres-Sauné; Christophe Pasquier; Bruno Marchou; Patrice Massip; Jacques Izopet
Journal:  J Clin Microbiol       Date:  2009-05-13       Impact factor: 5.948

3.  Development and performance of a new recombinant virus phenotypic entry assay to determine HIV-1 coreceptor usage.

Authors:  Stéphanie Raymond; Pierre Delobel; Maud Mavigner; Michelle Cazabat; Corinne Souyris; Stéphanie Encinas; Patrick Bruel; Karine Sandres-Sauné; Bruno Marchou; Patrice Massip; Jacques Izopet
Journal:  J Clin Virol       Date:  2009-12-16       Impact factor: 3.168

4.  Impact of HIV-1 viral subtype on disease progression and response to antiretroviral therapy.

Authors:  Philippa J Easterbrook; Mel Smith; Jane Mullen; Siobhan O'Shea; Ian Chrystie; Annemiek de Ruiter; Iain D Tatt; Anna Maria Geretti; Mark Zuckerman
Journal:  J Int AIDS Soc       Date:  2010-02-03       Impact factor: 5.396

5.  Prediction of HIV type 1 subtype C tropism by genotypic algorithms built from subtype B viruses.

Authors:  Stéphanie Raymond; Pierre Delobel; Maud Mavigner; Laurent Ferradini; Michelle Cazabat; Corinne Souyris; Karine Sandres-Sauné; Christophe Pasquier; Bruno Marchou; Patrice Massip; Jacques Izopet
Journal:  J Acquir Immune Defic Syndr       Date:  2010-02       Impact factor: 3.731

6.  Concordance between two phenotypic assays and ultradeep pyrosequencing for determining HIV-1 tropism.

Authors:  Adrien Saliou; Pierre Delobel; Martine Dubois; Florence Nicot; Stéphanie Raymond; Vincent Calvez; Bernard Masquelier; Jacques Izopet
Journal:  Antimicrob Agents Chemother       Date:  2011-04-04       Impact factor: 5.191

7.  HIV-1 subtype D infection is associated with faster disease progression than subtype A in spite of similar plasma HIV-1 loads.

Authors:  Jared M Baeten; Bhavna Chohan; Ludo Lavreys; Vrasha Chohan; R Scott McClelland; Laura Certain; Kishorchandra Mandaliya; Walter Jaoko; Julie Overbaugh
Journal:  J Infect Dis       Date:  2007-03-02       Impact factor: 5.226

8.  Genotypic prediction of HIV-1 CRF01-AE tropism.

Authors:  Stéphanie Raymond; Pierre Delobel; Sylvie Rogez; Stéphanie Encinas; Patrick Bruel; Christophe Pasquier; Karine Sandres-Sauné; Bruno Marchou; Patrice Massip; Jacques Izopet
Journal:  J Clin Microbiol       Date:  2012-12-05       Impact factor: 5.948

9.  Coreceptor tropism in human immunodeficiency virus type 1 subtype D: high prevalence of CXCR4 tropism and heterogeneous composition of viral populations.

Authors:  Wei Huang; Susan H Eshleman; Jonathan Toma; Signe Fransen; Eric Stawiski; Ellen E Paxinos; Jeannette M Whitcomb; Alicia M Young; Deborah Donnell; Francis Mmiro; Philippa Musoke; Laura A Guay; J Brooks Jackson; Neil T Parkin; Christos J Petropoulos
Journal:  J Virol       Date:  2007-05-16       Impact factor: 5.103

10.  Genotypic prediction of HIV-1 subtype D tropism.

Authors:  Stéphanie Raymond; Pierre Delobel; Marie-Laure Chaix; Michelle Cazabat; Stéphanie Encinas; Patrick Bruel; Karine Sandres-Sauné; Bruno Marchou; Patrice Massip; Jacques Izopet
Journal:  Retrovirology       Date:  2011-07-13       Impact factor: 4.602
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  2 in total

1.  Antiretroviral-Experienced HIV-1-Infected Patients Treated with Maraviroc: Factors Associated with Virological Response.

Authors:  Cathia Soulie; Gilles Peytavin; Charlotte Charpentier; Sidonie Lambert-Niclot; Sophie Sayon; Benoit Visseaux; Anne Simon; Christine Katlama; Yazdan Yazdanpanah; Diane Descamps; Vincent Calvez; Anne-Geneviève Marcelin
Journal:  AIDS Res Hum Retroviruses       Date:  2014-12-17       Impact factor: 2.205

2.  Reliable genotypic tropism tests for the major HIV-1 subtypes.

Authors:  Kieran Cashin; Lachlan R Gray; Katherine L Harvey; Danielle Perez-Bercoff; Guinevere Q Lee; Jasminka Sterjovski; Michael Roche; James F Demarest; Fraser Drummond; P Richard Harrigan; Melissa J Churchill; Paul R Gorry
Journal:  Sci Rep       Date:  2015-02-25       Impact factor: 4.379
  2 in total

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