Literature DB >> 23796718

Practical quantification of necrosis in histological whole-slide images.

André Homeyer1, Andrea Schenk, Janine Arlt, Uta Dahmen, Olaf Dirsch, Horst K Hahn.   

Abstract

Since the histological quantification of necrosis is a common task in medical research and practice, we evaluate different image analysis methods for quantifying necrosis in whole-slide images. In a practical usage scenario, we assess the impact of different classification algorithms and feature sets on both accuracy and computation time. We show how a well-chosen combination of multiresolution features and an efficient postprocessing step enables the accurate quantification necrosis in gigapixel images in less than a minute. The results are general enough to be applied to other areas of histological image analysis as well.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Histological image analysis; Necrosis quantification; Pattern recognition; Whole-slide imaging

Mesh:

Year:  2013        PMID: 23796718     DOI: 10.1016/j.compmedimag.2013.05.002

Source DB:  PubMed          Journal:  Comput Med Imaging Graph        ISSN: 0895-6111            Impact factor:   4.790


  9 in total

1.  Targeting CD64 mediates elimination of M1 but not M2 macrophages in vitro and in cutaneous inflammation in mice and patient biopsies.

Authors:  Dmitrij Hristodorov; Radoslav Mladenov; Verena von Felbert; Michael Huhn; Rainer Fischer; Stefan Barth; Theo Thepen
Journal:  MAbs       Date:  2015       Impact factor: 5.857

2.  Assessment of tumour viability in human lung cancer xenografts with texture-based image analysis.

Authors:  Riku Turkki; Nina Linder; Tanja Holopainen; Yinhai Wang; Anne Grote; Mikael Lundin; Kari Alitalo; Johan Lundin
Journal:  J Clin Pathol       Date:  2015-05-28       Impact factor: 3.411

3.  Modulation of hepatic perfusion did not improve recovery from hepatic outflow obstruction.

Authors:  J Arlt; W Wei; C Xie; A Homeyer; U Settmacher; U Dahmen; O Dirsch
Journal:  BMC Pharmacol Toxicol       Date:  2017-06-26       Impact factor: 2.483

4.  Induction of chronic cholestasis without liver cirrhosis - Creation of an animal model.

Authors:  Felix Dondorf; René Fahrner; Michael Ardelt; Eleonora Patsenker; Felix Stickel; Uta Dahmen; Utz Settmacher; Falk Rauchfuß
Journal:  World J Gastroenterol       Date:  2017-06-21       Impact factor: 5.742

5.  High-throughput adaptive sampling for whole-slide histopathology image analysis (HASHI) via convolutional neural networks: Application to invasive breast cancer detection.

Authors:  Angel Cruz-Roa; Hannah Gilmore; Ajay Basavanhally; Michael Feldman; Shridar Ganesan; Natalie Shih; John Tomaszewski; Anant Madabhushi; Fabio González
Journal:  PLoS One       Date:  2018-05-24       Impact factor: 3.240

6.  Automatic Detection of Granuloma Necrosis in Pulmonary Tuberculosis Using a Two-Phase Algorithm: 2D-TB.

Authors:  Pelin Kus; Metin N Gurcan; Gillian Beamer
Journal:  Microorganisms       Date:  2019-12-07

7.  TissueWand, a Rapid Histopathology Annotation Tool.

Authors:  Martin Lindvall; Alexander Sanner; Fredrik Petré; Karin Lindman; Darren Treanor; Claes Lundström; Jonas Löwgren
Journal:  J Pathol Inform       Date:  2020-08-21

8.  Representative Sinusoids for Hepatic Four-Scale Pharmacokinetics Simulations.

Authors:  Lars Ole Schwen; Arne Schenk; Clemens Kreutz; Jens Timmer; María Matilde Bartolomé Rodríguez; Lars Kuepfer; Tobias Preusser
Journal:  PLoS One       Date:  2015-07-29       Impact factor: 3.240

Review 9.  Whole Slide Imaging and Its Applications to Histopathological Studies of Liver Disorders.

Authors:  Rossana C N Melo; Maximilian W D Raas; Cinthia Palazzi; Vitor H Neves; Kássia K Malta; Thiago P Silva
Journal:  Front Med (Lausanne)       Date:  2020-01-08
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.