Literature DB >> 23795753

Transposable elements and microevolutionary changes in natural populations.

Georgi Bonchev1, Christian Parisod.   

Abstract

Transposable elements (TEs) usually represent the most abundant and dynamic fraction of genomes in almost all living organisms. The overall capacity of such 'junk DNA' to induce mutations and foster the reorganization of functional genomes suggests that TE may be of central evolutionary significance. However, to what extent TE dynamics drive and is driven by the evolutionary trajectory of host taxa remains poorly known. Further work addressing the fate of TE insertions in natural populations is necessary to shed light on their impact on microevolutionary processes. Here, we highlight methodological approaches (i.e. transposon displays and high-throughput sequencing), tracking TE insertions across large numbers of individuals and discuss their pitfalls and benefits for molecular ecology surveys.
© 2013 John Wiley & Sons Ltd.

Keywords:  adaptation; genome dynamics; high-throughput sequencing; retrotransposons; speciation; transposon displays

Mesh:

Substances:

Year:  2013        PMID: 23795753     DOI: 10.1111/1755-0998.12133

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  23 in total

1.  Genomics of homoploid hybrid speciation: diversity and transcriptional activity of long terminal repeat retrotransposons in hybrid sunflowers.

Authors:  Sebastien Renaut; Heather C Rowe; Mark C Ungerer; Loren H Rieseberg
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-08-05       Impact factor: 6.237

2.  Genome reorganization in F1 hybrids uncovers the role of retrotransposons in reproductive isolation.

Authors:  Natacha Senerchia; François Felber; Christian Parisod
Journal:  Proc Biol Sci       Date:  2015-04-07       Impact factor: 5.349

3.  Identification of transposons near predicted lncRNA and mRNA pools of Prunus mume using an integrative transposable element database constructed from Rosaceae plant genomes.

Authors:  Kaifeng Ma; Qixiang Zhang; Tangren Cheng; Jia Wang
Journal:  Mol Genet Genomics       Date:  2018-05-26       Impact factor: 3.291

4.  Within-plant variation in seed size and inflorescence fecundity is associated with epigenetic mosaicism in the shrub Lavandula latifolia (Lamiaceae).

Authors:  Conchita Alonso; Ricardo Pérez; Pilar Bazaga; Mónica Medrano; Carlos M Herrera
Journal:  Ann Bot       Date:  2018-01-25       Impact factor: 4.357

5.  Environment-directed activation of the Escherichia coliflhDC operon by transposons.

Authors:  Zhongge Zhang; Chika Kukita; M Zafri Humayun; Milton H Saier
Journal:  Microbiology       Date:  2017-04-12       Impact factor: 2.777

6.  Patterns of Evolutionary Trajectories and Domestication History within the Genus Hordeum Assessed by REMAP Markers.

Authors:  Georgi Bonchev; Roman Dusinský; Pavol Hauptvogel; Miroslav Švec
Journal:  J Mol Evol       Date:  2017-02-06       Impact factor: 2.395

7.  Ty3/Gypsy retrotransposons in the Pacific abalone Haliotis discus hannai: characterization and use for species identification in the genus Haliotis.

Authors:  Sung-Il Lee; Jeong-An Gim; Min-Ji Lim; Heui-Soo Kim; Bo-Hye Nam; Nam-Soo Kim
Journal:  Genes Genomics       Date:  2017-10-13       Impact factor: 1.839

8.  A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum.

Authors:  Achal Rastogi; Fabio Rocha Jimenez Vieira; Anne-Flore Deton-Cabanillas; Alaguraj Veluchamy; Catherine Cantrel; Gaohong Wang; Pieter Vanormelingen; Chris Bowler; Gwenael Piganeau; Hanhua Hu; Leila Tirichine
Journal:  ISME J       Date:  2019-10-17       Impact factor: 10.302

9.  Detecting endogenous retrovirus-driven tissue-specific gene transcription.

Authors:  Mihaela Pavlicev; Kaori Hiratsuka; Kayleigh A Swaggart; Caitlin Dunn; Louis Muglia
Journal:  Genome Biol Evol       Date:  2015-03-11       Impact factor: 3.416

10.  Genetics of cryptic speciation within an Arctic mustard, Draba nivalis.

Authors:  A Lovisa S Gustafsson; Inger Skrede; Heather C Rowe; Galina Gussarova; Liv Borgen; Loren H Rieseberg; Christian Brochmann; Christian Parisod
Journal:  PLoS One       Date:  2014-04-01       Impact factor: 3.240

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