| Literature DB >> 23795131 |
Robert T Stibrany1, Joseph A Potenza.
Abstract
The structure of the title tri-fluoro-acetic acid adduct, C17H12N2O3·C2HF3O2, contains a tri-fluoro-acetic acid mol-ecule hydrogen bonded to the imine N atom of the imidazole ring of a nearly planar four-fused-ring system (r.m.s. deviatiation = 0.013 Å). The carb-oxy-lic acid group of the triflouro-acetic acid mol-ecule is twisted with respect to the mean plane of the four-fused-ring sytem by 75.9 (2)°. A short intra-molecular C-H⋯O hydrogen bond occurs. In the crystal, the adduct mol-ecules are arranged into stacks along the b axis via π-π inter-actions between imidazole rings and between imidazole and one of the benzene rings [centroid-centroid distances 3.352 (2) and 3.485 (2) Å, respectively]. Molecules are linked via C-H⋯O hydrogen bonds, forming an alternating polymeric head-to-head/tail-to-tail stepped chain approximately along the a-axis direction and tilted on an axis bisecting the b and c axes.Entities:
Year: 2013 PMID: 23795131 PMCID: PMC3685112 DOI: 10.1107/S1600536813013834
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H12N2O3·C2HF3O2 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 800 reflections | |
| θ = 2.5–26.0° | |
| µ = 0.14 mm−1 | |
| α = 97.539 (8)° | |
| β = 98.055 (8)° | Spike, yellow |
| γ = 92.695 (8)° | 0.48 × 0.10 × 0.07 mm |
| Bruker SMART CCD area-detector diffractometer | 3380 independent reflections |
| Radiation source: fine-focus sealed tube | 2642 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.2°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 7689 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3380 reflections | (Δ/σ)max < 0.001 |
| 267 parameters | Δρmax = 0.42 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| F1 | 0.25760 (19) | 0.12397 (17) | 0.05463 (9) | 0.0435 (4) | |
| F2 | 0.0782 (2) | 0.27375 (17) | −0.01973 (9) | 0.0460 (4) | |
| F3 | −0.0070 (2) | 0.13711 (19) | 0.08785 (10) | 0.0550 (5) | |
| O1 | 0.1872 (2) | 0.51438 (18) | 0.12697 (11) | 0.0390 (4) | |
| O2 | 0.2409 (2) | 0.32127 (17) | 0.22686 (10) | 0.0300 (4) | |
| O11 | 0.79755 (19) | 0.70261 (18) | 0.38002 (10) | 0.0310 (4) | |
| O12 | 0.60779 (18) | 0.52898 (16) | 0.27167 (9) | 0.0242 (3) | |
| O30 | 0.08434 (17) | 0.69206 (16) | 0.60128 (9) | 0.0250 (3) | |
| N11 | 0.3148 (2) | 0.69116 (18) | 0.51474 (11) | 0.0185 (3) | |
| N13 | 0.3464 (2) | 0.54546 (18) | 0.37627 (11) | 0.0201 (4) | |
| C1 | 0.1900 (3) | 0.3743 (2) | 0.14513 (13) | 0.0242 (4) | |
| C2 | 0.1289 (3) | 0.2258 (3) | 0.06570 (14) | 0.0276 (5) | |
| C11 | 0.4856 (2) | 0.7380 (2) | 0.49858 (13) | 0.0183 (4) | |
| C12 | 0.5023 (2) | 0.6433 (2) | 0.41081 (12) | 0.0189 (4) | |
| C13 | 0.2372 (2) | 0.5763 (2) | 0.43870 (12) | 0.0199 (4) | |
| H13 | 0.1230 | 0.5272 | 0.4325 | 0.024* | |
| C20 | 0.5334 (3) | 1.1120 (2) | 0.80732 (13) | 0.0260 (5) | |
| H20 | 0.5971 | 1.1923 | 0.8543 | 0.031* | |
| C21 | 0.5911 (2) | 0.8628 (2) | 0.57107 (12) | 0.0185 (4) | |
| C22 | 0.7608 (2) | 0.9217 (2) | 0.56293 (13) | 0.0217 (4) | |
| H22 | 0.8127 | 0.8794 | 0.5096 | 0.026* | |
| C23 | 0.8557 (3) | 1.0438 (2) | 0.63361 (14) | 0.0248 (4) | |
| H23 | 0.9689 | 1.0822 | 0.6262 | 0.030* | |
| C24 | 0.7837 (3) | 1.1071 (2) | 0.71340 (14) | 0.0247 (4) | |
| H24 | 0.8483 | 1.1877 | 0.7599 | 0.030* | |
| C25 | 0.6110 (3) | 1.0504 (2) | 0.72550 (13) | 0.0224 (4) | |
| C26 | 0.5131 (2) | 0.9275 (2) | 0.65349 (13) | 0.0193 (4) | |
| C27 | 0.3396 (3) | 0.8738 (2) | 0.66789 (13) | 0.0205 (4) | |
| C28 | 0.2685 (3) | 0.9367 (2) | 0.74925 (13) | 0.0241 (4) | |
| H28 | 0.1553 | 0.8993 | 0.7573 | 0.029* | |
| C29 | 0.3665 (3) | 1.0565 (2) | 0.81947 (14) | 0.0281 (5) | |
| H29 | 0.3188 | 1.0986 | 0.8744 | 0.034* | |
| C30 | 0.2317 (2) | 0.7487 (2) | 0.59630 (13) | 0.0191 (4) | |
| C41 | 0.6521 (2) | 0.6321 (2) | 0.35499 (13) | 0.0206 (4) | |
| C42 | 0.7451 (3) | 0.5121 (3) | 0.20891 (14) | 0.0274 (5) | |
| H42A | 0.8381 | 0.4469 | 0.2358 | 0.033* | |
| H42B | 0.7970 | 0.6210 | 0.2027 | 0.033* | |
| C43 | 0.6566 (3) | 0.4257 (3) | 0.11143 (14) | 0.0346 (5) | |
| H43A | 0.6112 | 0.3161 | 0.1181 | 0.052* | |
| H43B | 0.7413 | 0.4172 | 0.0668 | 0.052* | |
| H43C | 0.5610 | 0.4886 | 0.0872 | 0.052* | |
| H2O | 0.284 (4) | 0.419 (4) | 0.281 (2) | 0.061 (8)* |
| F1 | 0.0536 (9) | 0.0426 (8) | 0.0288 (7) | 0.0170 (6) | −0.0016 (6) | −0.0117 (6) |
| F2 | 0.0704 (10) | 0.0429 (8) | 0.0192 (6) | 0.0082 (7) | −0.0094 (6) | −0.0009 (5) |
| F3 | 0.0627 (10) | 0.0589 (9) | 0.0352 (8) | −0.0337 (8) | 0.0193 (7) | −0.0232 (7) |
| O1 | 0.0595 (11) | 0.0267 (8) | 0.0269 (8) | 0.0030 (7) | −0.0062 (7) | 0.0029 (6) |
| O2 | 0.0476 (9) | 0.0231 (7) | 0.0164 (7) | −0.0031 (6) | −0.0007 (6) | −0.0004 (6) |
| O11 | 0.0297 (8) | 0.0378 (8) | 0.0236 (7) | −0.0072 (6) | 0.0089 (6) | −0.0049 (6) |
| O12 | 0.0290 (7) | 0.0273 (7) | 0.0157 (6) | 0.0000 (6) | 0.0065 (5) | −0.0020 (5) |
| O30 | 0.0243 (7) | 0.0270 (7) | 0.0231 (7) | −0.0040 (6) | 0.0063 (5) | 0.0000 (5) |
| N11 | 0.0216 (8) | 0.0182 (8) | 0.0153 (7) | −0.0011 (6) | 0.0027 (6) | 0.0016 (6) |
| N13 | 0.0258 (8) | 0.0189 (8) | 0.0149 (7) | −0.0004 (6) | 0.0013 (6) | 0.0025 (6) |
| C1 | 0.0257 (10) | 0.0276 (11) | 0.0189 (9) | 0.0026 (8) | 0.0027 (7) | 0.0021 (8) |
| C2 | 0.0310 (11) | 0.0327 (11) | 0.0188 (10) | 0.0023 (9) | 0.0038 (8) | 0.0023 (8) |
| C11 | 0.0205 (9) | 0.0189 (9) | 0.0162 (9) | 0.0016 (7) | 0.0023 (7) | 0.0049 (7) |
| C12 | 0.0228 (9) | 0.0183 (9) | 0.0149 (8) | 0.0000 (7) | 0.0002 (7) | 0.0027 (7) |
| C13 | 0.0229 (9) | 0.0201 (9) | 0.0156 (9) | −0.0016 (7) | 0.0002 (7) | 0.0029 (7) |
| C20 | 0.0382 (12) | 0.0202 (10) | 0.0166 (9) | 0.0002 (8) | −0.0010 (8) | −0.0023 (7) |
| C21 | 0.0239 (9) | 0.0167 (9) | 0.0140 (8) | 0.0004 (7) | −0.0002 (7) | 0.0027 (7) |
| C22 | 0.0254 (10) | 0.0217 (9) | 0.0179 (9) | 0.0017 (7) | 0.0024 (7) | 0.0036 (7) |
| C23 | 0.0237 (10) | 0.0239 (10) | 0.0259 (10) | −0.0004 (8) | −0.0004 (8) | 0.0054 (8) |
| C24 | 0.0291 (11) | 0.0193 (9) | 0.0225 (10) | −0.0035 (8) | −0.0042 (8) | 0.0009 (7) |
| C25 | 0.0306 (10) | 0.0183 (9) | 0.0173 (9) | 0.0024 (8) | −0.0009 (8) | 0.0027 (7) |
| C26 | 0.0249 (10) | 0.0167 (9) | 0.0160 (9) | 0.0012 (7) | 0.0010 (7) | 0.0038 (7) |
| C27 | 0.0272 (10) | 0.0191 (9) | 0.0156 (9) | 0.0027 (8) | 0.0023 (7) | 0.0041 (7) |
| C28 | 0.0291 (11) | 0.0244 (10) | 0.0201 (9) | 0.0025 (8) | 0.0064 (8) | 0.0045 (7) |
| C29 | 0.0398 (12) | 0.0272 (11) | 0.0166 (9) | 0.0052 (9) | 0.0053 (8) | −0.0016 (8) |
| C30 | 0.0222 (10) | 0.0209 (9) | 0.0153 (8) | 0.0029 (7) | 0.0046 (7) | 0.0039 (7) |
| C41 | 0.0277 (10) | 0.0185 (9) | 0.0158 (9) | 0.0001 (8) | 0.0036 (7) | 0.0027 (7) |
| C42 | 0.0315 (11) | 0.0321 (11) | 0.0209 (10) | 0.0041 (9) | 0.0109 (8) | 0.0038 (8) |
| C43 | 0.0412 (13) | 0.0452 (13) | 0.0183 (10) | 0.0076 (10) | 0.0086 (9) | 0.0013 (9) |
| F1—C2 | 1.326 (3) | C20—H20 | 0.9300 |
| F2—C2 | 1.322 (2) | C21—C22 | 1.386 (3) |
| F3—C2 | 1.332 (2) | C21—C26 | 1.426 (3) |
| O1—C1 | 1.197 (2) | C22—C23 | 1.402 (3) |
| O2—C1 | 1.294 (2) | C22—H22 | 0.9300 |
| O2—H2O | 1.03 (3) | C23—C24 | 1.368 (3) |
| O11—C41 | 1.210 (2) | C23—H23 | 0.9300 |
| O12—C41 | 1.338 (2) | C24—C25 | 1.418 (3) |
| O12—C42 | 1.462 (2) | C24—H24 | 0.9300 |
| O30—C30 | 1.211 (2) | C25—C26 | 1.425 (3) |
| N11—C13 | 1.368 (2) | C26—C27 | 1.425 (3) |
| N11—C11 | 1.399 (2) | C27—C28 | 1.381 (3) |
| N11—C30 | 1.423 (2) | C27—C30 | 1.463 (3) |
| N13—C13 | 1.302 (3) | C28—C29 | 1.397 (3) |
| N13—C12 | 1.390 (2) | C28—H28 | 0.9300 |
| C1—C2 | 1.537 (3) | C29—H29 | 0.9300 |
| C11—C12 | 1.390 (3) | C42—C43 | 1.506 (3) |
| C11—C21 | 1.461 (2) | C42—H42A | 0.9700 |
| C12—C41 | 1.475 (3) | C42—H42B | 0.9700 |
| C13—H13 | 0.9300 | C43—H43A | 0.9600 |
| C20—C29 | 1.373 (3) | C43—H43B | 0.9600 |
| C20—C25 | 1.410 (3) | C43—H43C | 0.9600 |
| C1—O2—H2O | 111.3 (16) | C23—C24—C25 | 120.26 (17) |
| C41—O12—C42 | 115.50 (15) | C23—C24—H24 | 119.9 |
| C13—N11—C11 | 108.78 (15) | C25—C24—H24 | 119.9 |
| C13—N11—C30 | 124.09 (15) | C20—C25—C24 | 121.70 (17) |
| C11—N11—C30 | 127.13 (15) | C20—C25—C26 | 118.99 (18) |
| C13—N13—C12 | 107.70 (15) | C24—C25—C26 | 119.30 (18) |
| O1—C1—O2 | 129.19 (18) | C25—C26—C27 | 117.75 (17) |
| O1—C1—C2 | 120.89 (18) | C25—C26—C21 | 119.44 (17) |
| O2—C1—C2 | 109.92 (17) | C27—C26—C21 | 122.81 (16) |
| F2—C2—F1 | 107.05 (17) | C28—C27—C26 | 121.52 (17) |
| F2—C2—F3 | 107.57 (17) | C28—C27—C30 | 118.02 (18) |
| F1—C2—F3 | 107.45 (18) | C26—C27—C30 | 120.46 (17) |
| F2—C2—C1 | 112.15 (17) | C27—C28—C29 | 120.05 (19) |
| F1—C2—C1 | 111.43 (16) | C27—C28—H28 | 120.0 |
| F3—C2—C1 | 110.95 (16) | C29—C28—H28 | 120.0 |
| C12—C11—N11 | 103.93 (15) | C20—C29—C28 | 119.86 (19) |
| C12—C11—C21 | 138.42 (17) | C20—C29—H29 | 120.1 |
| N11—C11—C21 | 117.65 (16) | C28—C29—H29 | 120.1 |
| C11—C12—N13 | 109.43 (16) | O30—C30—N11 | 119.32 (16) |
| C11—C12—C41 | 130.92 (17) | O30—C30—C27 | 126.38 (17) |
| N13—C12—C41 | 119.64 (16) | N11—C30—C27 | 114.30 (16) |
| N13—C13—N11 | 110.16 (16) | O11—C41—O12 | 123.27 (17) |
| N13—C13—H13 | 124.9 | O11—C41—C12 | 125.94 (17) |
| N11—C13—H13 | 124.9 | O12—C41—C12 | 110.78 (16) |
| C29—C20—C25 | 121.82 (17) | O12—C42—C43 | 106.77 (16) |
| C29—C20—H20 | 119.1 | O12—C42—H42A | 110.4 |
| C25—C20—H20 | 119.1 | C43—C42—H42A | 110.4 |
| C22—C21—C26 | 119.02 (16) | O12—C42—H42B | 110.4 |
| C22—C21—C11 | 123.35 (17) | C43—C42—H42B | 110.4 |
| C26—C21—C11 | 117.63 (17) | H42A—C42—H42B | 108.6 |
| C21—C22—C23 | 121.24 (18) | C42—C43—H43A | 109.5 |
| C21—C22—H22 | 119.4 | C42—C43—H43B | 109.5 |
| C23—C22—H22 | 119.4 | H43A—C43—H43B | 109.5 |
| C24—C23—C22 | 120.73 (19) | C42—C43—H43C | 109.5 |
| C24—C23—H23 | 119.6 | H43A—C43—H43C | 109.5 |
| C22—C23—H23 | 119.6 | H43B—C43—H43C | 109.5 |
| O1—C1—C2—F2 | 0.6 (3) | C20—C25—C26—C27 | 0.5 (3) |
| O2—C1—C2—F2 | −178.97 (17) | C24—C25—C26—C27 | −179.78 (16) |
| O1—C1—C2—F1 | 120.6 (2) | C20—C25—C26—C21 | −179.23 (16) |
| O2—C1—C2—F1 | −59.0 (2) | C24—C25—C26—C21 | 0.5 (3) |
| O1—C1—C2—F3 | −119.7 (2) | C22—C21—C26—C25 | −0.1 (3) |
| O2—C1—C2—F3 | 60.7 (2) | C11—C21—C26—C25 | −179.51 (16) |
| C13—N11—C11—C12 | −0.7 (2) | C22—C21—C26—C27 | −179.83 (16) |
| C30—N11—C11—C12 | 178.48 (16) | C11—C21—C26—C27 | 0.8 (3) |
| C13—N11—C11—C21 | 179.02 (15) | C25—C26—C27—C28 | −0.7 (3) |
| C30—N11—C11—C21 | −1.8 (3) | C21—C26—C27—C28 | 178.95 (17) |
| N11—C11—C12—N13 | 0.52 (19) | C25—C26—C27—C30 | 179.58 (16) |
| C21—C11—C12—N13 | −179.2 (2) | C21—C26—C27—C30 | −0.7 (3) |
| N11—C11—C12—C41 | −178.54 (17) | C26—C27—C28—C29 | 0.4 (3) |
| C21—C11—C12—C41 | 1.8 (4) | C30—C27—C28—C29 | −179.91 (17) |
| C13—N13—C12—C11 | −0.1 (2) | C25—C20—C29—C28 | −0.5 (3) |
| C13—N13—C12—C41 | 179.07 (16) | C27—C28—C29—C20 | 0.2 (3) |
| C12—N13—C13—N11 | −0.4 (2) | C13—N11—C30—O30 | 1.5 (3) |
| C11—N11—C13—N13 | 0.7 (2) | C11—N11—C30—O30 | −177.63 (16) |
| C30—N11—C13—N13 | −178.53 (15) | C13—N11—C30—C27 | −179.09 (15) |
| C12—C11—C21—C22 | 0.7 (3) | C11—N11—C30—C27 | 1.8 (3) |
| N11—C11—C21—C22 | −178.98 (16) | C28—C27—C30—O30 | −0.8 (3) |
| C12—C11—C21—C26 | 180.0 (2) | C26—C27—C30—O30 | 178.88 (17) |
| N11—C11—C21—C26 | 0.4 (2) | C28—C27—C30—N11 | 179.81 (15) |
| C26—C21—C22—C23 | −0.5 (3) | C26—C27—C30—N11 | −0.5 (2) |
| C11—C21—C22—C23 | 178.86 (16) | C42—O12—C41—O11 | −2.9 (3) |
| C21—C22—C23—C24 | 0.7 (3) | C42—O12—C41—C12 | 178.27 (15) |
| C22—C23—C24—C25 | −0.3 (3) | C11—C12—C41—O11 | 3.7 (3) |
| C29—C20—C25—C24 | −179.62 (18) | N13—C12—C41—O11 | −175.24 (18) |
| C29—C20—C25—C26 | 0.1 (3) | C11—C12—C41—O12 | −177.52 (18) |
| C23—C24—C25—C20 | 179.44 (17) | N13—C12—C41—O12 | 3.5 (2) |
| C23—C24—C25—C26 | −0.3 (3) | C41—O12—C42—C43 | −166.99 (16) |
| H··· | ||||
| C22—H22···O11 | 0.93 | 2.15 | 2.981 (3) | 148 |
| O2—H2 | 1.03 (3) | 1.58 (3) | 2.597 (2) | 170 (3) |
| C13—H13···O30i | 0.93 | 2.28 | 3.143 (3) | 154 |
| C23—H23···O11ii | 0.93 | 2.46 | 3.320 (3) | 155 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C22—H22⋯O11 | 0.93 | 2.15 | 2.981 (3) | 148 |
| O2—H2 | 1.03 (3) | 1.58 (3) | 2.597 (2) | 170 (3) |
| C13—H13⋯O30i | 0.93 | 2.28 | 3.143 (3) | 154 |
| C23—H23⋯O11ii | 0.93 | 2.46 | 3.320 (3) | 155 |
Symmetry codes: (i) ; (ii) .