Literature DB >> 23795131

Ethyl 7-oxo-7H-benzo[de]imidazo[5,1-a]iso-quinoline-11-carboxyl-ate-tri-fluoro-acetic acid (1/1).

Robert T Stibrany1, Joseph A Potenza.   

Abstract

The structure of the title tri-fluoro-acetic acid adduct, C17H12N2O3·C2HF3O2, contains a tri-fluoro-acetic acid mol-ecule hydrogen bonded to the imine N atom of the imidazole ring of a nearly planar four-fused-ring system (r.m.s. deviatiation = 0.013 Å). The carb-oxy-lic acid group of the triflouro-acetic acid mol-ecule is twisted with respect to the mean plane of the four-fused-ring sytem by 75.9 (2)°. A short intra-molecular C-H⋯O hydrogen bond occurs. In the crystal, the adduct mol-ecules are arranged into stacks along the b axis via π-π inter-actions between imidazole rings and between imidazole and one of the benzene rings [centroid-centroid distances 3.352 (2) and 3.485 (2) Å, respectively]. Molecules are linked via C-H⋯O hydrogen bonds, forming an alternating polymeric head-to-head/tail-to-tail stepped chain approximately along the a-axis direction and tilted on an axis bisecting the b and c axes.

Entities:  

Year:  2013        PMID: 23795131      PMCID: PMC3685112          DOI: 10.1107/S1600536813013834

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 19F NMR studies of related compounds, see: Stibrany (2003 ▶). For polymerization studies, see: Stibrany et al. (2003 ▶). For their use as agents to study electron transfer, see: Knapp et al. (1990 ▶). For related structures, see: Baugh et al. (2006 ▶); Stibrany (2003 ▶); Stibrany et al. (2002 ▶, 2004 ▶); Stibrany & Potenza (2008 ▶, 2009 ▶); Gorun et al. (1996 ▶).

Experimental

Crystal data

C17H12N2O3·C2HF3O2 M = 406.31 Triclinic, a = 7.642 (3) Å b = 8.111 (4) Å c = 14.043 (6) Å α = 97.539 (8)° β = 98.055 (8)° γ = 92.695 (8)° V = 852.6 (6) Å3 Z = 2 Mo Kα radiation μ = 0.14 mm−1 T = 100 K 0.48 × 0.10 × 0.07 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶; Blessing, 1995 ▶) T min = 0.711, T max = 1.00 7689 measured reflections 3380 independent reflections 2642 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.140 S = 1.00 3380 reflections 267 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813013834/gk2567sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813013834/gk2567Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H12N2O3·C2HF3O2Z = 2
Mr = 406.31F(000) = 416
Triclinic, P1Dx = 1.583 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.642 (3) ÅCell parameters from 800 reflections
b = 8.111 (4) Åθ = 2.5–26.0°
c = 14.043 (6) ŵ = 0.14 mm1
α = 97.539 (8)°T = 100 K
β = 98.055 (8)°Spike, yellow
γ = 92.695 (8)°0.48 × 0.10 × 0.07 mm
V = 852.6 (6) Å3
Bruker SMART CCD area-detector diffractometer3380 independent reflections
Radiation source: fine-focus sealed tube2642 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
φ and ω scansθmax = 26.2°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2000; Blessing, 1995)h = −9→9
Tmin = 0.711, Tmax = 1.00k = −10→10
7689 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0934P)2 + 0.124P] where P = (Fo2 + 2Fc2)/3
3380 reflections(Δ/σ)max < 0.001
267 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.25760 (19)0.12397 (17)0.05463 (9)0.0435 (4)
F20.0782 (2)0.27375 (17)−0.01973 (9)0.0460 (4)
F3−0.0070 (2)0.13711 (19)0.08785 (10)0.0550 (5)
O10.1872 (2)0.51438 (18)0.12697 (11)0.0390 (4)
O20.2409 (2)0.32127 (17)0.22686 (10)0.0300 (4)
O110.79755 (19)0.70261 (18)0.38002 (10)0.0310 (4)
O120.60779 (18)0.52898 (16)0.27167 (9)0.0242 (3)
O300.08434 (17)0.69206 (16)0.60128 (9)0.0250 (3)
N110.3148 (2)0.69116 (18)0.51474 (11)0.0185 (3)
N130.3464 (2)0.54546 (18)0.37627 (11)0.0201 (4)
C10.1900 (3)0.3743 (2)0.14513 (13)0.0242 (4)
C20.1289 (3)0.2258 (3)0.06570 (14)0.0276 (5)
C110.4856 (2)0.7380 (2)0.49858 (13)0.0183 (4)
C120.5023 (2)0.6433 (2)0.41081 (12)0.0189 (4)
C130.2372 (2)0.5763 (2)0.43870 (12)0.0199 (4)
H130.12300.52720.43250.024*
C200.5334 (3)1.1120 (2)0.80732 (13)0.0260 (5)
H200.59711.19230.85430.031*
C210.5911 (2)0.8628 (2)0.57107 (12)0.0185 (4)
C220.7608 (2)0.9217 (2)0.56293 (13)0.0217 (4)
H220.81270.87940.50960.026*
C230.8557 (3)1.0438 (2)0.63361 (14)0.0248 (4)
H230.96891.08220.62620.030*
C240.7837 (3)1.1071 (2)0.71340 (14)0.0247 (4)
H240.84831.18770.75990.030*
C250.6110 (3)1.0504 (2)0.72550 (13)0.0224 (4)
C260.5131 (2)0.9275 (2)0.65349 (13)0.0193 (4)
C270.3396 (3)0.8738 (2)0.66789 (13)0.0205 (4)
C280.2685 (3)0.9367 (2)0.74925 (13)0.0241 (4)
H280.15530.89930.75730.029*
C290.3665 (3)1.0565 (2)0.81947 (14)0.0281 (5)
H290.31881.09860.87440.034*
C300.2317 (2)0.7487 (2)0.59630 (13)0.0191 (4)
C410.6521 (2)0.6321 (2)0.35499 (13)0.0206 (4)
C420.7451 (3)0.5121 (3)0.20891 (14)0.0274 (5)
H42A0.83810.44690.23580.033*
H42B0.79700.62100.20270.033*
C430.6566 (3)0.4257 (3)0.11143 (14)0.0346 (5)
H43A0.61120.31610.11810.052*
H43B0.74130.41720.06680.052*
H43C0.56100.48860.08720.052*
H2O0.284 (4)0.419 (4)0.281 (2)0.061 (8)*
U11U22U33U12U13U23
F10.0536 (9)0.0426 (8)0.0288 (7)0.0170 (6)−0.0016 (6)−0.0117 (6)
F20.0704 (10)0.0429 (8)0.0192 (6)0.0082 (7)−0.0094 (6)−0.0009 (5)
F30.0627 (10)0.0589 (9)0.0352 (8)−0.0337 (8)0.0193 (7)−0.0232 (7)
O10.0595 (11)0.0267 (8)0.0269 (8)0.0030 (7)−0.0062 (7)0.0029 (6)
O20.0476 (9)0.0231 (7)0.0164 (7)−0.0031 (6)−0.0007 (6)−0.0004 (6)
O110.0297 (8)0.0378 (8)0.0236 (7)−0.0072 (6)0.0089 (6)−0.0049 (6)
O120.0290 (7)0.0273 (7)0.0157 (6)0.0000 (6)0.0065 (5)−0.0020 (5)
O300.0243 (7)0.0270 (7)0.0231 (7)−0.0040 (6)0.0063 (5)0.0000 (5)
N110.0216 (8)0.0182 (8)0.0153 (7)−0.0011 (6)0.0027 (6)0.0016 (6)
N130.0258 (8)0.0189 (8)0.0149 (7)−0.0004 (6)0.0013 (6)0.0025 (6)
C10.0257 (10)0.0276 (11)0.0189 (9)0.0026 (8)0.0027 (7)0.0021 (8)
C20.0310 (11)0.0327 (11)0.0188 (10)0.0023 (9)0.0038 (8)0.0023 (8)
C110.0205 (9)0.0189 (9)0.0162 (9)0.0016 (7)0.0023 (7)0.0049 (7)
C120.0228 (9)0.0183 (9)0.0149 (8)0.0000 (7)0.0002 (7)0.0027 (7)
C130.0229 (9)0.0201 (9)0.0156 (9)−0.0016 (7)0.0002 (7)0.0029 (7)
C200.0382 (12)0.0202 (10)0.0166 (9)0.0002 (8)−0.0010 (8)−0.0023 (7)
C210.0239 (9)0.0167 (9)0.0140 (8)0.0004 (7)−0.0002 (7)0.0027 (7)
C220.0254 (10)0.0217 (9)0.0179 (9)0.0017 (7)0.0024 (7)0.0036 (7)
C230.0237 (10)0.0239 (10)0.0259 (10)−0.0004 (8)−0.0004 (8)0.0054 (8)
C240.0291 (11)0.0193 (9)0.0225 (10)−0.0035 (8)−0.0042 (8)0.0009 (7)
C250.0306 (10)0.0183 (9)0.0173 (9)0.0024 (8)−0.0009 (8)0.0027 (7)
C260.0249 (10)0.0167 (9)0.0160 (9)0.0012 (7)0.0010 (7)0.0038 (7)
C270.0272 (10)0.0191 (9)0.0156 (9)0.0027 (8)0.0023 (7)0.0041 (7)
C280.0291 (11)0.0244 (10)0.0201 (9)0.0025 (8)0.0064 (8)0.0045 (7)
C290.0398 (12)0.0272 (11)0.0166 (9)0.0052 (9)0.0053 (8)−0.0016 (8)
C300.0222 (10)0.0209 (9)0.0153 (8)0.0029 (7)0.0046 (7)0.0039 (7)
C410.0277 (10)0.0185 (9)0.0158 (9)0.0001 (8)0.0036 (7)0.0027 (7)
C420.0315 (11)0.0321 (11)0.0209 (10)0.0041 (9)0.0109 (8)0.0038 (8)
C430.0412 (13)0.0452 (13)0.0183 (10)0.0076 (10)0.0086 (9)0.0013 (9)
F1—C21.326 (3)C20—H200.9300
F2—C21.322 (2)C21—C221.386 (3)
F3—C21.332 (2)C21—C261.426 (3)
O1—C11.197 (2)C22—C231.402 (3)
O2—C11.294 (2)C22—H220.9300
O2—H2O1.03 (3)C23—C241.368 (3)
O11—C411.210 (2)C23—H230.9300
O12—C411.338 (2)C24—C251.418 (3)
O12—C421.462 (2)C24—H240.9300
O30—C301.211 (2)C25—C261.425 (3)
N11—C131.368 (2)C26—C271.425 (3)
N11—C111.399 (2)C27—C281.381 (3)
N11—C301.423 (2)C27—C301.463 (3)
N13—C131.302 (3)C28—C291.397 (3)
N13—C121.390 (2)C28—H280.9300
C1—C21.537 (3)C29—H290.9300
C11—C121.390 (3)C42—C431.506 (3)
C11—C211.461 (2)C42—H42A0.9700
C12—C411.475 (3)C42—H42B0.9700
C13—H130.9300C43—H43A0.9600
C20—C291.373 (3)C43—H43B0.9600
C20—C251.410 (3)C43—H43C0.9600
C1—O2—H2O111.3 (16)C23—C24—C25120.26 (17)
C41—O12—C42115.50 (15)C23—C24—H24119.9
C13—N11—C11108.78 (15)C25—C24—H24119.9
C13—N11—C30124.09 (15)C20—C25—C24121.70 (17)
C11—N11—C30127.13 (15)C20—C25—C26118.99 (18)
C13—N13—C12107.70 (15)C24—C25—C26119.30 (18)
O1—C1—O2129.19 (18)C25—C26—C27117.75 (17)
O1—C1—C2120.89 (18)C25—C26—C21119.44 (17)
O2—C1—C2109.92 (17)C27—C26—C21122.81 (16)
F2—C2—F1107.05 (17)C28—C27—C26121.52 (17)
F2—C2—F3107.57 (17)C28—C27—C30118.02 (18)
F1—C2—F3107.45 (18)C26—C27—C30120.46 (17)
F2—C2—C1112.15 (17)C27—C28—C29120.05 (19)
F1—C2—C1111.43 (16)C27—C28—H28120.0
F3—C2—C1110.95 (16)C29—C28—H28120.0
C12—C11—N11103.93 (15)C20—C29—C28119.86 (19)
C12—C11—C21138.42 (17)C20—C29—H29120.1
N11—C11—C21117.65 (16)C28—C29—H29120.1
C11—C12—N13109.43 (16)O30—C30—N11119.32 (16)
C11—C12—C41130.92 (17)O30—C30—C27126.38 (17)
N13—C12—C41119.64 (16)N11—C30—C27114.30 (16)
N13—C13—N11110.16 (16)O11—C41—O12123.27 (17)
N13—C13—H13124.9O11—C41—C12125.94 (17)
N11—C13—H13124.9O12—C41—C12110.78 (16)
C29—C20—C25121.82 (17)O12—C42—C43106.77 (16)
C29—C20—H20119.1O12—C42—H42A110.4
C25—C20—H20119.1C43—C42—H42A110.4
C22—C21—C26119.02 (16)O12—C42—H42B110.4
C22—C21—C11123.35 (17)C43—C42—H42B110.4
C26—C21—C11117.63 (17)H42A—C42—H42B108.6
C21—C22—C23121.24 (18)C42—C43—H43A109.5
C21—C22—H22119.4C42—C43—H43B109.5
C23—C22—H22119.4H43A—C43—H43B109.5
C24—C23—C22120.73 (19)C42—C43—H43C109.5
C24—C23—H23119.6H43A—C43—H43C109.5
C22—C23—H23119.6H43B—C43—H43C109.5
O1—C1—C2—F20.6 (3)C20—C25—C26—C270.5 (3)
O2—C1—C2—F2−178.97 (17)C24—C25—C26—C27−179.78 (16)
O1—C1—C2—F1120.6 (2)C20—C25—C26—C21−179.23 (16)
O2—C1—C2—F1−59.0 (2)C24—C25—C26—C210.5 (3)
O1—C1—C2—F3−119.7 (2)C22—C21—C26—C25−0.1 (3)
O2—C1—C2—F360.7 (2)C11—C21—C26—C25−179.51 (16)
C13—N11—C11—C12−0.7 (2)C22—C21—C26—C27−179.83 (16)
C30—N11—C11—C12178.48 (16)C11—C21—C26—C270.8 (3)
C13—N11—C11—C21179.02 (15)C25—C26—C27—C28−0.7 (3)
C30—N11—C11—C21−1.8 (3)C21—C26—C27—C28178.95 (17)
N11—C11—C12—N130.52 (19)C25—C26—C27—C30179.58 (16)
C21—C11—C12—N13−179.2 (2)C21—C26—C27—C30−0.7 (3)
N11—C11—C12—C41−178.54 (17)C26—C27—C28—C290.4 (3)
C21—C11—C12—C411.8 (4)C30—C27—C28—C29−179.91 (17)
C13—N13—C12—C11−0.1 (2)C25—C20—C29—C28−0.5 (3)
C13—N13—C12—C41179.07 (16)C27—C28—C29—C200.2 (3)
C12—N13—C13—N11−0.4 (2)C13—N11—C30—O301.5 (3)
C11—N11—C13—N130.7 (2)C11—N11—C30—O30−177.63 (16)
C30—N11—C13—N13−178.53 (15)C13—N11—C30—C27−179.09 (15)
C12—C11—C21—C220.7 (3)C11—N11—C30—C271.8 (3)
N11—C11—C21—C22−178.98 (16)C28—C27—C30—O30−0.8 (3)
C12—C11—C21—C26180.0 (2)C26—C27—C30—O30178.88 (17)
N11—C11—C21—C260.4 (2)C28—C27—C30—N11179.81 (15)
C26—C21—C22—C23−0.5 (3)C26—C27—C30—N11−0.5 (2)
C11—C21—C22—C23178.86 (16)C42—O12—C41—O11−2.9 (3)
C21—C22—C23—C240.7 (3)C42—O12—C41—C12178.27 (15)
C22—C23—C24—C25−0.3 (3)C11—C12—C41—O113.7 (3)
C29—C20—C25—C24−179.62 (18)N13—C12—C41—O11−175.24 (18)
C29—C20—C25—C260.1 (3)C11—C12—C41—O12−177.52 (18)
C23—C24—C25—C20179.44 (17)N13—C12—C41—O123.5 (2)
C23—C24—C25—C26−0.3 (3)C41—O12—C42—C43−166.99 (16)
D—H···AD—HH···AD···AD—H···A
C22—H22···O110.932.152.981 (3)148
O2—H2O···N131.03 (3)1.58 (3)2.597 (2)170 (3)
C13—H13···O30i0.932.283.143 (3)154
C23—H23···O11ii0.932.463.320 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C22—H22⋯O110.932.152.981 (3)148
O2—H2O⋯N131.03 (3)1.58 (3)2.597 (2)170 (3)
C13—H13⋯O30i 0.932.283.143 (3)154
C23—H23⋯O11ii 0.932.463.320 (3)155

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  An alternating copolymer containing trigonal planar homocoordinated copper(I) ions: catena-poly[[[bis[mu-(E)-1,2-bis(1-ethyl-1H-benzimidazol-2-yl)ethene-kappa2N3:N3']dicopper(I)]-mu-(E)-1,2-bis(1-ethyl-1H-benzimidazol-2-yl)ethene-kappa2N3:N3'] bis(perchlorate) acetonitrile disolvate].

Authors:  Robert T Stibrany; Joseph A Potenza
Journal:  Acta Crystallogr C       Date:  2008-04-19       Impact factor: 1.172

4.  Structures of 1-hydrophenanthroimidazoles: building blocks in the synthesis of expanded-ring bis(imidazoles).

Authors:  Robert T Stibrany; Joseph A Potenza
Journal:  Acta Crystallogr C       Date:  2009-07-15       Impact factor: 1.172

5.  A geometrically constraining bis(benzimidazole) ligand and its nearly tetrahedral complexes with Fe(II) and Mn(II).

Authors:  Robert T Stibrany; Maxim V Lobanov; Harvey J Schugar; Joseph A Potenza
Journal:  Inorg Chem       Date:  2004-02-23       Impact factor: 5.165

  5 in total

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