Literature DB >> 23795127

1-(4-Chloro-phen-yl)-2-(1,3-diazepan-2-yl-idene)ethanone.

Xiao-Wei Zhang1, Jian-Hui Xia, Zhao-Hui Xu, Li-Ben Wang, Chu-Yi Yu.   

Abstract

In the title compound, C13H15ClN2O, there are two crystallographically independent but conformationally similar (E)-mol-ecules in the asymmetric unit [dihedral angles between the phenyl ring and a common planar fragment of the n class="Chemical">1,3-diazepane moiety = 47.34 (16) and 48.00 (16)°]. The seven-membered ring system adopts a chair conformation in both molecules. In the crystal, N-H⋯O hydrogen bonds lead to chains extending along the b-axis direction.

Entities:  

Year:  2013        PMID: 23795127      PMCID: PMC3685108          DOI: 10.1107/S1600536813013858

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Heterocyclic ketene aminals are a useful synthon for the synthesis of fused heterocycles, see: Huang & Wang (1994 ▶). For their bioactivity and potential applications as pesticides and in medicine, see: Kondo et al. (1990 ▶); Jordan et al. (2002 ▶). For the synthesis, see: Huang & Liu (1989 ▶). For a similar structure, see: Yu et al. (2006 ▶).

Experimental

Crystal data

C13H15ClN2O M = 250.72 Triclinic, a = 10.779 (4) Å b = 10.815 (3) Å c = 12.158 (4) Å α = 96.091 (4)° β = 110.710 (4)° γ = 101.244 (4)° V = 1276.4 (7) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 173 K 0.25 × 0.15 × 0.14 mm

Data collection

Rigaku Saturn724+ CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2007 ▶) T min = 0.606, T max = 1.000 11344 measured reflections 5780 independent reflections 4854 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.075 wR(F 2) = 0.162 S = 1.12 5780 reflections 307 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.42 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813013858/zs2253sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813013858/zs2253Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813013858/zs2253Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15ClN2OZ = 4
Mr = 250.72F(000) = 528
Triclinic, P1Dx = 1.305 Mg m3
Hall symbol: -P 1Melting point = 448–450 K
a = 10.779 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.815 (3) ÅCell parameters from 3768 reflections
c = 12.158 (4) Åθ = 1.8–27.5°
α = 96.091 (4)°µ = 0.29 mm1
β = 110.710 (4)°T = 173 K
γ = 101.244 (4)°Block, white
V = 1276.4 (7) Å30.25 × 0.15 × 0.14 mm
Rigaku Saturn724+ CCD diffractometer5780 independent reflections
Radiation source: sealed tube4854 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.048
ω scans at fixed χ = 45°θmax = 27.5°, θmin = 2.1°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007)h = −13→13
Tmin = 0.606, Tmax = 1.000k = −14→13
11344 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.075Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0466P)2 + 1.3126P] where P = (Fo2 + 2Fc2)/3
5780 reflections(Δ/σ)max < 0.001
307 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.01481 (9)0.17456 (9)0.95043 (7)0.0515 (2)
Cl0.43184 (9)0.64786 (9)0.02814 (7)0.0516 (2)
O10.3033 (2)0.92241 (17)0.48282 (17)0.0311 (4)
O20.2480 (2)0.42103 (17)0.56002 (18)0.0335 (5)
N10.1989 (2)0.8486 (2)0.6444 (2)0.0305 (5)
H10.18680.90350.59540.037*
N20.1648 (2)0.6291 (2)0.6502 (2)0.0315 (5)
H20.21180.57040.65550.038*
N30.3217 (2)0.1261 (2)0.3506 (2)0.0305 (5)
H30.34860.06770.39210.037*
N40.3187 (2)0.3421 (2)0.3784 (2)0.0304 (5)
H40.26330.39130.38100.036*
C10.2192 (3)0.8941 (3)0.7685 (3)0.0360 (7)
H1A0.23640.98890.78270.043*
H1B0.30230.87260.82190.043*
C20.1006 (3)0.8396 (3)0.8037 (3)0.0414 (7)
H2A0.01440.84830.74290.050*
H2B0.11380.89060.88130.050*
C30.0865 (4)0.6990 (3)0.8145 (3)0.0413 (7)
H3A0.17240.69030.87550.050*
H3B0.01170.67130.84270.050*
C40.0566 (3)0.6115 (3)0.6977 (3)0.0343 (6)
H4A0.03620.52160.70890.041*
H4B−0.02730.62390.63660.041*
C50.1976 (3)0.7281 (2)0.5993 (2)0.0275 (6)
C60.2322 (3)0.7060 (2)0.4985 (2)0.0268 (5)
H60.21980.61940.46350.032*
C70.2834 (3)0.8023 (2)0.4467 (2)0.0258 (5)
C80.3180 (3)0.7624 (2)0.3414 (2)0.0259 (5)
C90.2356 (3)0.6569 (3)0.2512 (3)0.0327 (6)
H90.15520.60790.25640.039*
C100.2687 (3)0.6221 (3)0.1543 (3)0.0359 (6)
H100.21110.55080.09270.043*
C110.3869 (3)0.6927 (3)0.1485 (2)0.0337 (6)
C120.4705 (3)0.7977 (3)0.2366 (3)0.0365 (7)
H120.55200.84510.23190.044*
C130.4345 (3)0.8334 (3)0.3316 (2)0.0314 (6)
H130.49010.90730.39080.038*
C140.3117 (3)0.1092 (3)0.2266 (3)0.0354 (6)
H14A0.22310.12350.17550.042*
H14B0.31100.01920.20050.042*
C150.4259 (4)0.1975 (3)0.2056 (3)0.0441 (8)
H15A0.42110.16790.12390.053*
H15B0.51530.19170.26340.053*
C160.4181 (4)0.3370 (3)0.2190 (3)0.0467 (8)
H16A0.49100.38870.19930.056*
H16B0.32870.34280.16120.056*
C170.4338 (3)0.3927 (3)0.3444 (3)0.0353 (6)
H17A0.51780.37680.40220.042*
H17B0.44730.48690.35190.042*
C180.2926 (3)0.2248 (2)0.4058 (2)0.0267 (5)
C190.2356 (3)0.2047 (2)0.4922 (2)0.0274 (5)
H190.20610.11880.50060.033*
C200.2198 (3)0.3026 (2)0.5660 (2)0.0266 (5)
C210.1675 (3)0.2680 (2)0.6605 (2)0.0258 (5)
C220.0618 (3)0.1599 (3)0.6392 (2)0.0299 (6)
H220.02220.10470.56280.036*
C230.0134 (3)0.1315 (3)0.7275 (3)0.0321 (6)
H23−0.06010.05870.71180.039*
C240.0741 (3)0.2111 (3)0.8384 (2)0.0332 (6)
C250.1789 (3)0.3185 (3)0.8625 (3)0.0392 (7)
H250.21960.37190.93980.047*
C260.2243 (3)0.3477 (3)0.7732 (3)0.0351 (6)
H260.29500.42290.78870.042*
U11U22U33U12U13U23
Cl10.0604 (5)0.0674 (6)0.0365 (4)0.0123 (4)0.0303 (4)0.0159 (4)
Cl0.0496 (5)0.0742 (6)0.0351 (4)0.0167 (4)0.0236 (4)−0.0008 (4)
O10.0418 (11)0.0198 (9)0.0341 (10)0.0049 (8)0.0194 (9)0.0035 (8)
O20.0467 (12)0.0222 (9)0.0404 (11)0.0098 (8)0.0253 (10)0.0091 (8)
N10.0413 (13)0.0250 (11)0.0303 (12)0.0103 (10)0.0179 (10)0.0077 (10)
N20.0431 (14)0.0246 (11)0.0374 (13)0.0120 (10)0.0243 (11)0.0116 (10)
N30.0437 (14)0.0269 (11)0.0280 (12)0.0122 (10)0.0195 (10)0.0078 (9)
N40.0349 (12)0.0264 (11)0.0383 (13)0.0115 (10)0.0196 (11)0.0144 (10)
C10.0420 (17)0.0338 (15)0.0312 (15)0.0068 (13)0.0169 (13)−0.0027 (12)
C20.0494 (19)0.0418 (17)0.0387 (17)0.0122 (14)0.0251 (15)0.0019 (14)
C30.0521 (19)0.0480 (18)0.0365 (16)0.0151 (15)0.0293 (15)0.0124 (14)
C40.0371 (15)0.0328 (15)0.0395 (16)0.0073 (12)0.0215 (13)0.0120 (13)
C50.0281 (13)0.0233 (12)0.0318 (14)0.0061 (10)0.0129 (11)0.0036 (11)
C60.0343 (14)0.0194 (12)0.0286 (13)0.0064 (10)0.0149 (11)0.0022 (10)
C70.0257 (12)0.0226 (12)0.0274 (13)0.0047 (10)0.0090 (10)0.0049 (10)
C80.0308 (14)0.0217 (12)0.0269 (13)0.0063 (10)0.0128 (11)0.0062 (10)
C90.0355 (15)0.0280 (14)0.0337 (15)0.0016 (11)0.0163 (12)0.0035 (12)
C100.0408 (16)0.0325 (15)0.0298 (14)0.0049 (12)0.0130 (12)−0.0026 (12)
C110.0411 (16)0.0417 (16)0.0250 (13)0.0176 (13)0.0168 (12)0.0061 (12)
C120.0305 (14)0.0448 (17)0.0355 (15)0.0061 (12)0.0165 (12)0.0056 (13)
C130.0312 (14)0.0295 (14)0.0298 (14)0.0032 (11)0.0108 (11)0.0015 (11)
C140.0441 (17)0.0347 (15)0.0288 (14)0.0089 (13)0.0170 (13)0.0034 (12)
C150.055 (2)0.0457 (18)0.0421 (18)0.0109 (15)0.0318 (16)0.0065 (15)
C160.062 (2)0.0445 (18)0.0451 (19)0.0070 (16)0.0354 (17)0.0141 (15)
C170.0343 (15)0.0319 (15)0.0404 (16)0.0018 (12)0.0188 (13)0.0068 (13)
C180.0283 (13)0.0266 (13)0.0251 (13)0.0081 (10)0.0094 (11)0.0047 (11)
C190.0345 (14)0.0201 (12)0.0318 (14)0.0067 (10)0.0170 (12)0.0078 (11)
C200.0315 (13)0.0221 (12)0.0271 (13)0.0064 (10)0.0120 (11)0.0068 (10)
C210.0286 (13)0.0246 (12)0.0265 (13)0.0091 (10)0.0117 (11)0.0058 (10)
C220.0353 (14)0.0265 (13)0.0279 (13)0.0059 (11)0.0139 (11)0.0024 (11)
C230.0337 (15)0.0301 (14)0.0341 (15)0.0049 (11)0.0162 (12)0.0075 (12)
C240.0381 (16)0.0408 (16)0.0273 (14)0.0123 (13)0.0182 (12)0.0092 (12)
C250.0468 (18)0.0394 (16)0.0261 (14)0.0049 (14)0.0128 (13)−0.0013 (12)
C260.0405 (16)0.0288 (14)0.0302 (15)−0.0005 (12)0.0131 (13)0.0006 (12)
Cl1—C241.747 (3)C9—C101.383 (4)
Cl—C111.747 (3)C9—H90.9500
O1—C71.277 (3)C10—C111.381 (4)
O2—C201.273 (3)C10—H100.9500
N1—C51.354 (3)C11—C121.382 (4)
N1—C11.461 (3)C12—C131.383 (4)
N1—H10.8800C12—H120.9500
N2—C51.344 (3)C13—H130.9500
N2—C41.463 (3)C14—C151.519 (4)
N2—H20.8800C14—H14A0.9900
N3—C181.347 (3)C14—H14B0.9900
N3—C141.461 (3)C15—C161.522 (5)
N3—H30.8800C15—H15A0.9900
N4—C181.348 (3)C15—H15B0.9900
N4—C171.468 (3)C16—C171.515 (4)
N4—H40.8800C16—H16A0.9900
C1—C21.520 (4)C16—H16B0.9900
C1—H1A0.9900C17—H17A0.9900
C1—H1B0.9900C17—H17B0.9900
C2—C31.522 (4)C18—C191.407 (4)
C2—H2A0.9900C19—C201.390 (4)
C2—H2B0.9900C19—H190.9500
C3—C41.513 (4)C20—C211.499 (4)
C3—H3A0.9900C21—C221.392 (4)
C3—H3B0.9900C21—C261.395 (4)
C4—H4A0.9900C22—C231.387 (4)
C4—H4B0.9900C22—H220.9500
C5—C61.412 (4)C23—C241.377 (4)
C6—C71.396 (4)C23—H230.9500
C6—H60.9500C24—C251.376 (4)
C7—C81.499 (4)C25—C261.381 (4)
C8—C131.390 (4)C25—H250.9500
C8—C91.394 (4)C26—H260.9500
C5—N1—C1124.8 (2)C11—C12—C13119.4 (3)
C5—N1—H1117.6C11—C12—H12120.3
C1—N1—H1117.6C13—C12—H12120.3
C5—N2—C4124.8 (2)C12—C13—C8120.8 (3)
C5—N2—H2117.6C12—C13—H13119.6
C4—N2—H2117.6C8—C13—H13119.6
C18—N3—C14124.7 (2)N3—C14—C15115.0 (2)
C18—N3—H3117.7N3—C14—H14A108.5
C14—N3—H3117.7C15—C14—H14A108.5
C18—N4—C17124.0 (2)N3—C14—H14B108.5
C18—N4—H4118.0C15—C14—H14B108.5
C17—N4—H4118.0H14A—C14—H14B107.5
N1—C1—C2115.2 (2)C14—C15—C16112.7 (3)
N1—C1—H1A108.5C14—C15—H15A109.1
C2—C1—H1A108.5C16—C15—H15A109.1
N1—C1—H1B108.5C14—C15—H15B109.1
C2—C1—H1B108.5C16—C15—H15B109.1
H1A—C1—H1B107.5H15A—C15—H15B107.8
C1—C2—C3113.2 (3)C17—C16—C15112.6 (3)
C1—C2—H2A108.9C17—C16—H16A109.1
C3—C2—H2A108.9C15—C16—H16A109.1
C1—C2—H2B108.9C17—C16—H16B109.1
C3—C2—H2B108.9C15—C16—H16B109.1
H2A—C2—H2B107.8H16A—C16—H16B107.8
C4—C3—C2113.0 (2)N4—C17—C16115.5 (3)
C4—C3—H3A109.0N4—C17—H17A108.4
C2—C3—H3A109.0C16—C17—H17A108.4
C4—C3—H3B109.0N4—C17—H17B108.4
C2—C3—H3B109.0C16—C17—H17B108.4
H3A—C3—H3B107.8H17A—C17—H17B107.5
N2—C4—C3116.3 (2)N3—C18—N4119.9 (2)
N2—C4—H4A108.2N3—C18—C19119.7 (2)
C3—C4—H4A108.2N4—C18—C19120.4 (2)
N2—C4—H4B108.2C20—C19—C18124.1 (2)
C3—C4—H4B108.2C20—C19—H19117.9
H4A—C4—H4B107.4C18—C19—H19117.9
N2—C5—N1120.6 (2)O2—C20—C19124.6 (2)
N2—C5—C6119.4 (2)O2—C20—C21117.1 (2)
N1—C5—C6120.0 (2)C19—C20—C21118.4 (2)
C7—C6—C5124.6 (2)C22—C21—C26118.6 (2)
C7—C6—H6117.7C22—C21—C20122.2 (2)
C5—C6—H6117.7C26—C21—C20119.2 (2)
O1—C7—C6124.6 (2)C23—C22—C21121.1 (3)
O1—C7—C8117.5 (2)C23—C22—H22119.5
C6—C7—C8117.9 (2)C21—C22—H22119.5
C13—C8—C9118.4 (2)C24—C23—C22118.6 (3)
C13—C8—C7119.4 (2)C24—C23—H23120.7
C9—C8—C7122.1 (2)C22—C23—H23120.7
C10—C9—C8121.3 (3)C25—C24—C23121.8 (3)
C10—C9—H9119.4C25—C24—Cl1119.5 (2)
C8—C9—H9119.4C23—C24—Cl1118.7 (2)
C11—C10—C9118.9 (3)C24—C25—C26119.2 (3)
C11—C10—H10120.6C24—C25—H25120.4
C9—C10—H10120.6C26—C25—H25120.4
C10—C11—C12121.1 (3)C25—C26—C21120.7 (3)
C10—C11—Cl119.4 (2)C25—C26—H26119.6
C12—C11—Cl119.5 (2)C21—C26—H26119.6
C5—N1—C1—C2−70.7 (4)C18—N3—C14—C1575.0 (4)
N1—C1—C2—C372.1 (4)N3—C14—C15—C16−69.8 (4)
C1—C2—C3—C4−62.4 (4)C14—C15—C16—C1762.4 (4)
C5—N2—C4—C3−73.6 (4)C18—N4—C17—C1674.6 (4)
C2—C3—C4—N265.7 (4)C15—C16—C17—N4−69.9 (4)
C4—N2—C5—N139.6 (4)C14—N3—C18—N4−33.7 (4)
C4—N2—C5—C6−141.0 (3)C14—N3—C18—C19146.5 (3)
C1—N1—C5—N224.8 (4)C17—N4—C18—N3−33.2 (4)
C1—N1—C5—C6−154.5 (3)C17—N4—C18—C19146.6 (3)
N2—C5—C6—C7−172.1 (3)N3—C18—C19—C20170.6 (3)
N1—C5—C6—C77.3 (4)N4—C18—C19—C20−9.2 (4)
C5—C6—C7—O1−1.1 (4)C18—C19—C20—O23.9 (4)
C5—C6—C7—C8178.7 (2)C18—C19—C20—C21−175.3 (2)
O1—C7—C8—C1339.3 (4)O2—C20—C21—C22139.5 (3)
C6—C7—C8—C13−140.5 (3)C19—C20—C21—C22−41.2 (4)
O1—C7—C8—C9−139.7 (3)O2—C20—C21—C26−39.2 (4)
C6—C7—C8—C940.5 (4)C19—C20—C21—C26140.1 (3)
C13—C8—C9—C100.5 (4)C26—C21—C22—C230.1 (4)
C7—C8—C9—C10179.5 (3)C20—C21—C22—C23−178.6 (3)
C8—C9—C10—C111.0 (4)C21—C22—C23—C24−1.4 (4)
C9—C10—C11—C12−1.0 (5)C22—C23—C24—C251.3 (4)
C9—C10—C11—Cl178.7 (2)C22—C23—C24—Cl1−179.2 (2)
C10—C11—C12—C13−0.6 (5)C23—C24—C25—C260.3 (5)
Cl—C11—C12—C13179.8 (2)Cl1—C24—C25—C26−179.3 (2)
C11—C12—C13—C82.1 (4)C24—C25—C26—C21−1.6 (5)
C9—C8—C13—C12−2.1 (4)C22—C21—C26—C251.5 (4)
C7—C8—C13—C12178.9 (3)C20—C21—C26—C25−179.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.882.162.704 (3)119
N2—H2···O20.882.072.834 (3)145
N3—H3···O1i0.882.092.878 (3)149
N4—H4···O20.882.232.689 (3)112
C6—H6···O20.952.573.270 (3)131
C13—H13···O1ii0.952.473.372 (4)159
C19—H19···O1i0.952.573.274 (3)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O20.882.072.834 (3)145
N3—H3⋯O1i 0.882.092.878 (3)149

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antibacterial activity of thiazolo-, oxazolo-, and imidazolo[3,2-a][1,8]naphthyridinecarboxylic acids.

Authors:  H Kondo; M Taguchi; Y Inoue; F Sakamoto; G Tsukamoto
Journal:  J Med Chem       Date:  1990-07       Impact factor: 7.446

3.  Potential anxiolytic agents. Part 4: novel orally-active N(5)-substituted pyrido[1,2-a]benzimidazoles with high GABA-A receptor affinity.

Authors:  Alfonzo D Jordan; Anil H Vaidya; Daniel I Rosenthal; Barry Dubinsky; Cheryl P Kordik; Pauline J Sanfilippo; Wu-Nan Wu; Allen B Reitz
Journal:  Bioorg Med Chem Lett       Date:  2002-09-02       Impact factor: 2.823

  3 in total

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