Literature DB >> 23795126

6-(4-Methyl-phen-yl)-1,3,5-triazine-2,4-di-amine-4-methyl-benzoic acid (1/1).

Kaliyaperumal Thanigaimani1, Suhana Arshad, Ibrahim Abdul Razak, Duraisamy Makeshvaran, Kasthuri Balasubramani.   

Abstract

The 4-methyl-benzoic acid mol-ecule of the title adduct, C10H11N5·C8H8O2, is approximately planar with a dihedral angle of 6.3 (2)° between the carb-oxy-lic acid group and the benzene ring. In the triazine mol-ecule, the plane of the triazine ring makes a dihedral angle of 29.2 (2)° with that of the adjacent benzene ring. In the crystal, the acid and base mol-ecules are linked via N-H⋯O and O-H⋯N hydrogen bonds with an R 2 (2)(8) motif, and the acid-base pairs are further connected via N-H⋯N hydrogen bonds with R 2 (2)(8) motifs, forming a supra-molecular ribbon along [101]. Between the tapes, a weak C-H⋯π inter-action is observed.

Entities:  

Year:  2013        PMID: 23795126      PMCID: PMC3685107          DOI: 10.1107/S1600536813013895

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The background to this study has been described in the preceding paper, see: Thanigaimani et al. (2013 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C10H11N5·C8H8O2 M = 337.38 Monoclinic, a = 11.1271 (3) Å b = 20.9492 (6) Å c = 7.4189 (2) Å β = 101.321 (2)° V = 1695.73 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.40 × 0.40 × 0.20 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.965, T max = 0.982 8715 measured reflections 1932 independent reflections 1811 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.135 S = 1.19 1932 reflections 244 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813013895/is5272sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813013895/is5272Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813013895/is5272Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H11N5·C8H8O2F(000) = 712
Mr = 337.38Dx = 1.322 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 6815 reflections
a = 11.1271 (3) Åθ = 3.2–33.7°
b = 20.9492 (6) ŵ = 0.09 mm1
c = 7.4189 (2) ÅT = 100 K
β = 101.321 (2)°Plate, colourless
V = 1695.73 (8) Å30.40 × 0.40 × 0.20 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer1932 independent reflections
Radiation source: fine-focus sealed tube1811 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 27.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −14→14
Tmin = 0.965, Tmax = 0.982k = −27→27
8715 measured reflectionsl = −9→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.19w = 1/[σ2(Fo2) + (0.0311P)2 + 4.4301P] where P = (Fo2 + 2Fc2)/3
1932 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.27 e Å3
3 restraintsΔρmin = −0.27 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.4994 (3)0.25996 (17)0.3556 (5)0.0165 (8)
N20.3884 (4)0.16295 (15)0.2802 (6)0.0170 (7)
N30.2919 (3)0.26326 (16)0.1933 (6)0.0164 (7)
N40.5874 (3)0.16186 (18)0.4348 (5)0.0200 (8)
H1N40.581 (5)0.116 (3)0.447 (8)0.030*
H2N40.646 (3)0.183 (2)0.496 (7)0.030*
N50.1876 (3)0.16862 (19)0.1268 (6)0.0235 (9)
H1N50.126 (5)0.188 (3)0.049 (9)0.035*
H2N50.188 (5)0.126 (3)0.120 (8)0.035*
C10.4899 (4)0.19523 (19)0.3563 (6)0.0156 (8)
C20.2928 (4)0.19889 (19)0.2015 (6)0.0169 (8)
C30.3982 (4)0.29042 (16)0.2738 (7)0.0150 (7)
C40.4034 (4)0.36131 (17)0.2713 (7)0.0166 (8)
C50.2976 (4)0.3973 (2)0.2713 (6)0.0189 (9)
H5A0.22170.37620.26900.023*
C60.3023 (4)0.4632 (2)0.2746 (7)0.0228 (10)
H6A0.22960.48700.27440.027*
C70.4126 (4)0.49501 (18)0.2781 (7)0.0216 (9)
C80.5170 (4)0.4596 (2)0.2779 (7)0.0236 (10)
H8A0.59260.48090.27980.028*
C90.5136 (4)0.39311 (19)0.2749 (6)0.0187 (9)
H9A0.58650.36950.27530.022*
C100.4170 (5)0.5672 (2)0.2789 (8)0.0306 (11)
H10A0.49880.58140.33960.046*
H10B0.35580.58380.34550.046*
H10C0.39910.58300.15210.046*
O10.5390 (3)0.02412 (14)0.4355 (5)0.0245 (7)
O20.3551 (3)0.03627 (15)0.2514 (5)0.0248 (7)
C110.3135 (5)−0.1599 (2)0.1798 (7)0.0298 (12)
H11A0.2450−0.17700.09700.036*
C120.3269 (4)−0.0939 (2)0.1967 (7)0.0253 (10)
H12A0.2683−0.06620.12580.030*
C130.4271 (4)−0.0689 (2)0.3187 (6)0.0201 (10)
C140.5126 (5)−0.1101 (2)0.4226 (7)0.0268 (10)
H14A0.5807−0.09340.50690.032*
C150.4970 (5)−0.1754 (2)0.4014 (7)0.0305 (12)
H15A0.5557−0.20330.47110.037*
C160.3977 (6)−0.20104 (19)0.2808 (10)0.0338 (12)
C170.3816 (7)−0.2731 (2)0.2623 (12)0.0459 (16)
H17A0.3450−0.28380.13480.069*
H17B0.3278−0.28790.34370.069*
H17C0.4617−0.29390.29670.069*
C180.4468 (4)0.0016 (2)0.3420 (6)0.0202 (9)
H1O20.370 (6)0.072 (3)0.253 (9)0.038 (16)*
U11U22U33U12U13U23
N10.0140 (17)0.0145 (17)0.0190 (18)−0.0002 (14)−0.0018 (15)−0.0001 (15)
N20.0159 (16)0.0136 (14)0.0195 (15)0.0007 (15)−0.0012 (13)−0.0001 (17)
N30.0125 (15)0.0127 (17)0.0224 (18)0.0006 (14)−0.0002 (14)0.0021 (15)
N40.0155 (17)0.0140 (17)0.027 (2)−0.0007 (14)−0.0055 (15)−0.0017 (15)
N50.0146 (18)0.0144 (19)0.037 (2)−0.0030 (14)−0.0063 (17)0.0027 (16)
C10.0154 (18)0.0128 (18)0.0183 (19)0.0004 (16)0.0024 (16)0.0000 (17)
C20.0151 (18)0.017 (2)0.018 (2)−0.0021 (17)0.0015 (16)0.0000 (18)
C30.0138 (17)0.0147 (16)0.0168 (17)0.0002 (17)0.0041 (14)−0.0008 (19)
C40.0211 (19)0.0130 (16)0.0141 (18)0.0003 (18)−0.0009 (15)−0.0020 (19)
C50.0129 (19)0.020 (2)0.021 (2)−0.0008 (16)−0.0049 (16)−0.0015 (17)
C60.022 (2)0.019 (2)0.024 (2)0.0083 (18)−0.0040 (18)−0.0040 (18)
C70.032 (2)0.0132 (17)0.0169 (18)−0.0022 (19)−0.0026 (18)0.000 (2)
C80.025 (2)0.017 (2)0.027 (2)−0.0084 (17)0.0001 (19)0.0010 (18)
C90.018 (2)0.0148 (19)0.021 (2)−0.0005 (16)−0.0018 (17)−0.0002 (17)
C100.047 (3)0.0130 (18)0.030 (2)0.002 (2)0.003 (2)0.001 (2)
O10.0219 (16)0.0158 (13)0.0323 (18)−0.0005 (13)−0.0035 (13)0.0004 (14)
O20.0205 (15)0.0135 (14)0.037 (2)−0.0021 (12)−0.0022 (14)0.0019 (14)
C110.031 (3)0.024 (2)0.039 (3)−0.013 (2)0.019 (2)−0.015 (2)
C120.025 (2)0.020 (2)0.034 (3)0.0007 (18)0.014 (2)−0.007 (2)
C130.019 (2)0.0170 (19)0.028 (3)−0.0016 (16)0.0145 (19)−0.0006 (17)
C140.032 (3)0.019 (2)0.033 (3)0.0043 (19)0.015 (2)0.003 (2)
C150.041 (3)0.020 (2)0.036 (3)0.008 (2)0.020 (2)0.009 (2)
C160.052 (3)0.0146 (19)0.045 (3)−0.001 (2)0.034 (2)−0.005 (3)
C170.074 (4)0.017 (2)0.058 (4)−0.008 (3)0.041 (3)−0.005 (3)
C180.019 (2)0.0158 (19)0.026 (2)0.0017 (17)0.0062 (18)−0.002 (2)
N1—C31.333 (5)C9—H9A0.9500
N1—C11.360 (5)C10—H10A0.9800
N2—C21.340 (5)C10—H10B0.9800
N2—C11.342 (6)C10—H10C0.9800
N3—C31.342 (5)O1—C181.215 (5)
N3—C21.350 (5)O2—C181.324 (5)
N4—C11.326 (5)O2—H1O20.77 (6)
N4—H1N40.97 (6)C11—C161.380 (8)
N4—H2N40.849 (11)C11—C121.395 (6)
N5—C21.351 (5)C11—H11A0.9500
N5—H1N50.90 (6)C12—C131.393 (6)
N5—H2N50.89 (6)C12—H12A0.9500
C3—C41.487 (5)C13—C141.398 (6)
C4—C91.390 (6)C13—C181.498 (6)
C4—C51.398 (6)C14—C151.384 (6)
C5—C61.382 (6)C14—H14A0.9500
C5—H5A0.9500C15—C161.386 (8)
C6—C71.392 (7)C15—H15A0.9500
C6—H6A0.9500C16—C171.523 (6)
C7—C81.378 (6)C17—H17A0.9800
C7—C101.512 (5)C17—H17B0.9800
C8—C91.394 (6)C17—H17C0.9800
C8—H8A0.9500
C3—N1—C1114.8 (3)C8—C9—H9A120.0
C2—N2—C1115.5 (3)C7—C10—H10A109.5
C3—N3—C2113.9 (3)C7—C10—H10B109.5
C1—N4—H1N4120 (3)H10A—C10—H10B109.5
C1—N4—H2N4116 (4)C7—C10—H10C109.5
H1N4—N4—H2N4122 (5)H10A—C10—H10C109.5
C2—N5—H1N5123 (4)H10B—C10—H10C109.5
C2—N5—H2N5119 (4)C18—O2—H1O2113 (5)
H1N5—N5—H2N5115 (5)C16—C11—C12121.4 (5)
N4—C1—N2117.9 (4)C16—C11—H11A119.3
N4—C1—N1118.0 (4)C12—C11—H11A119.3
N2—C1—N1124.1 (4)C13—C12—C11119.2 (5)
N2—C2—N3125.4 (4)C13—C12—H12A120.4
N2—C2—N5117.7 (4)C11—C12—H12A120.4
N3—C2—N5116.9 (4)C12—C13—C14119.9 (4)
N1—C3—N3126.3 (3)C12—C13—C18121.7 (4)
N1—C3—C4116.9 (4)C14—C13—C18118.5 (4)
N3—C3—C4116.8 (3)C15—C14—C13119.4 (5)
C9—C4—C5118.8 (3)C15—C14—H14A120.3
C9—C4—C3121.0 (4)C13—C14—H14A120.3
C5—C4—C3120.2 (4)C14—C15—C16121.5 (5)
C6—C5—C4120.6 (4)C14—C15—H15A119.2
C6—C5—H5A119.7C16—C15—H15A119.2
C4—C5—H5A119.7C11—C16—C15118.6 (4)
C5—C6—C7120.6 (4)C11—C16—C17121.0 (6)
C5—C6—H6A119.7C15—C16—C17120.5 (6)
C7—C6—H6A119.7C16—C17—H17A109.5
C8—C7—C6118.9 (4)C16—C17—H17B109.5
C8—C7—C10120.7 (4)H17A—C17—H17B109.5
C6—C7—C10120.4 (4)C16—C17—H17C109.5
C7—C8—C9121.2 (4)H17A—C17—H17C109.5
C7—C8—H8A119.4H17B—C17—H17C109.5
C9—C8—H8A119.4O1—C18—O2123.8 (4)
C4—C9—C8120.0 (4)O1—C18—C13122.5 (4)
C4—C9—H9A120.0O2—C18—C13113.7 (4)
C2—N2—C1—N4−179.5 (4)C5—C6—C7—C10179.1 (5)
C2—N2—C1—N1−0.5 (7)C6—C7—C8—C9−0.2 (8)
C3—N1—C1—N4179.7 (4)C10—C7—C8—C9−179.2 (4)
C3—N1—C1—N20.7 (7)C5—C4—C9—C8−0.2 (7)
C1—N2—C2—N30.3 (7)C3—C4—C9—C8−178.1 (4)
C1—N2—C2—N5−178.5 (4)C7—C8—C9—C40.3 (7)
C3—N3—C2—N2−0.3 (7)C16—C11—C12—C13−0.2 (7)
C3—N3—C2—N5178.5 (4)C11—C12—C13—C14−0.1 (7)
C1—N1—C3—N3−0.7 (8)C11—C12—C13—C18179.6 (4)
C1—N1—C3—C4179.3 (4)C12—C13—C14—C150.6 (7)
C2—N3—C3—N10.5 (8)C18—C13—C14—C15−179.2 (5)
C2—N3—C3—C4−179.5 (4)C13—C14—C15—C16−0.7 (8)
N1—C3—C4—C928.0 (7)C12—C11—C16—C150.2 (8)
N3—C3—C4—C9−152.0 (5)C12—C11—C16—C17179.5 (5)
N1—C3—C4—C5−149.9 (5)C14—C15—C16—C110.3 (9)
N3—C3—C4—C530.1 (7)C14—C15—C16—C17−179.0 (6)
C9—C4—C5—C60.1 (7)C12—C13—C18—O1−173.4 (4)
C3—C4—C5—C6178.0 (4)C14—C13—C18—O16.4 (7)
C4—C5—C6—C7−0.1 (7)C12—C13—C18—O26.4 (6)
C5—C6—C7—C80.1 (8)C14—C13—C18—O2−173.8 (4)
D—H···AD—HH···AD···AD—H···A
O2—H1O2···N20.77 (6)1.92 (6)2.682 (4)171 (6)
N4—H1N4···O10.97 (6)1.98 (6)2.936 (5)169 (6)
N4—H2N4···N3i0.84 (4)2.26 (4)3.099 (5)172 (4)
N5—H1N5···N1ii0.90 (6)2.11 (6)3.003 (5)173 (5)
C10—H10C···Cg2iii0.982.833.723 (6)152
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C4–C9 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H1O2⋯N20.77 (6)1.92 (6)2.682 (4)171 (6)
N4—H1N4⋯O10.97 (6)1.98 (6)2.936 (5)169 (6)
N4—H2N4⋯N3i 0.84 (4)2.26 (4)3.099 (5)172 (4)
N5—H1N5⋯N1ii 0.90 (6)2.11 (6)3.003 (5)173 (5)
C10—H10CCg2iii 0.982.833.723 (6)152

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  6-(4-Methyl-phen-yl)-1,3,5-triazine-2,4-di-amine-benzoic acid (1/1).

Authors:  Kaliyaperumal Thanigaimani; Nuridayanti Che Khalib; Ibrahim Abdul Razak; Palanisamy Lavanya; Kasthuri Balasubramani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-25

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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