| Literature DB >> 23795126 |
Kaliyaperumal Thanigaimani1, Suhana Arshad, Ibrahim Abdul Razak, Duraisamy Makeshvaran, Kasthuri Balasubramani.
Abstract
The 4-methyl-benzoic acid mol-ecule of the title adduct, C10H11N5·C8H8O2, is approximately planar with a dihedral angle of 6.3 (2)° between the carb-oxy-lic acid group and the benzene ring. In the triazine mol-ecule, the plane of the triazine ring makes a dihedral angle of 29.2 (2)° with that of the adjacent benzene ring. In the crystal, the acid and base mol-ecules are linked via N-H⋯O and O-H⋯N hydrogen bonds with an R 2 (2)(8) motif, and the acid-base pairs are further connected via N-H⋯N hydrogen bonds with R 2 (2)(8) motifs, forming a supra-molecular ribbon along [101]. Between the tapes, a weak C-H⋯π inter-action is observed.Entities:
Year: 2013 PMID: 23795126 PMCID: PMC3685107 DOI: 10.1107/S1600536813013895
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H11N5·C8H8O2 | |
| Monoclinic, | Mo |
| Hall symbol: C -2yc | Cell parameters from 6815 reflections |
| θ = 3.2–33.7° | |
| µ = 0.09 mm−1 | |
| β = 101.321 (2)° | Plate, colourless |
| 0.40 × 0.40 × 0.20 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 1932 independent reflections |
| Radiation source: fine-focus sealed tube | 1811 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.5°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 8715 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1932 reflections | (Δ/σ)max < 0.001 |
| 244 parameters | Δρmax = 0.27 e Å−3 |
| 3 restraints | Δρmin = −0.27 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.4994 (3) | 0.25996 (17) | 0.3556 (5) | 0.0165 (8) | |
| N2 | 0.3884 (4) | 0.16295 (15) | 0.2802 (6) | 0.0170 (7) | |
| N3 | 0.2919 (3) | 0.26326 (16) | 0.1933 (6) | 0.0164 (7) | |
| N4 | 0.5874 (3) | 0.16186 (18) | 0.4348 (5) | 0.0200 (8) | |
| H1N4 | 0.581 (5) | 0.116 (3) | 0.447 (8) | 0.030* | |
| H2N4 | 0.646 (3) | 0.183 (2) | 0.496 (7) | 0.030* | |
| N5 | 0.1876 (3) | 0.16862 (19) | 0.1268 (6) | 0.0235 (9) | |
| H1N5 | 0.126 (5) | 0.188 (3) | 0.049 (9) | 0.035* | |
| H2N5 | 0.188 (5) | 0.126 (3) | 0.120 (8) | 0.035* | |
| C1 | 0.4899 (4) | 0.19523 (19) | 0.3563 (6) | 0.0156 (8) | |
| C2 | 0.2928 (4) | 0.19889 (19) | 0.2015 (6) | 0.0169 (8) | |
| C3 | 0.3982 (4) | 0.29042 (16) | 0.2738 (7) | 0.0150 (7) | |
| C4 | 0.4034 (4) | 0.36131 (17) | 0.2713 (7) | 0.0166 (8) | |
| C5 | 0.2976 (4) | 0.3973 (2) | 0.2713 (6) | 0.0189 (9) | |
| H5A | 0.2217 | 0.3762 | 0.2690 | 0.023* | |
| C6 | 0.3023 (4) | 0.4632 (2) | 0.2746 (7) | 0.0228 (10) | |
| H6A | 0.2296 | 0.4870 | 0.2744 | 0.027* | |
| C7 | 0.4126 (4) | 0.49501 (18) | 0.2781 (7) | 0.0216 (9) | |
| C8 | 0.5170 (4) | 0.4596 (2) | 0.2779 (7) | 0.0236 (10) | |
| H8A | 0.5926 | 0.4809 | 0.2798 | 0.028* | |
| C9 | 0.5136 (4) | 0.39311 (19) | 0.2749 (6) | 0.0187 (9) | |
| H9A | 0.5865 | 0.3695 | 0.2753 | 0.022* | |
| C10 | 0.4170 (5) | 0.5672 (2) | 0.2789 (8) | 0.0306 (11) | |
| H10A | 0.4988 | 0.5814 | 0.3396 | 0.046* | |
| H10B | 0.3558 | 0.5838 | 0.3455 | 0.046* | |
| H10C | 0.3991 | 0.5830 | 0.1521 | 0.046* | |
| O1 | 0.5390 (3) | 0.02412 (14) | 0.4355 (5) | 0.0245 (7) | |
| O2 | 0.3551 (3) | 0.03627 (15) | 0.2514 (5) | 0.0248 (7) | |
| C11 | 0.3135 (5) | −0.1599 (2) | 0.1798 (7) | 0.0298 (12) | |
| H11A | 0.2450 | −0.1770 | 0.0970 | 0.036* | |
| C12 | 0.3269 (4) | −0.0939 (2) | 0.1967 (7) | 0.0253 (10) | |
| H12A | 0.2683 | −0.0662 | 0.1258 | 0.030* | |
| C13 | 0.4271 (4) | −0.0689 (2) | 0.3187 (6) | 0.0201 (10) | |
| C14 | 0.5126 (5) | −0.1101 (2) | 0.4226 (7) | 0.0268 (10) | |
| H14A | 0.5807 | −0.0934 | 0.5069 | 0.032* | |
| C15 | 0.4970 (5) | −0.1754 (2) | 0.4014 (7) | 0.0305 (12) | |
| H15A | 0.5557 | −0.2033 | 0.4711 | 0.037* | |
| C16 | 0.3977 (6) | −0.20104 (19) | 0.2808 (10) | 0.0338 (12) | |
| C17 | 0.3816 (7) | −0.2731 (2) | 0.2623 (12) | 0.0459 (16) | |
| H17A | 0.3450 | −0.2838 | 0.1348 | 0.069* | |
| H17B | 0.3278 | −0.2879 | 0.3437 | 0.069* | |
| H17C | 0.4617 | −0.2939 | 0.2967 | 0.069* | |
| C18 | 0.4468 (4) | 0.0016 (2) | 0.3420 (6) | 0.0202 (9) | |
| H1O2 | 0.370 (6) | 0.072 (3) | 0.253 (9) | 0.038 (16)* |
| N1 | 0.0140 (17) | 0.0145 (17) | 0.0190 (18) | −0.0002 (14) | −0.0018 (15) | −0.0001 (15) |
| N2 | 0.0159 (16) | 0.0136 (14) | 0.0195 (15) | 0.0007 (15) | −0.0012 (13) | −0.0001 (17) |
| N3 | 0.0125 (15) | 0.0127 (17) | 0.0224 (18) | 0.0006 (14) | −0.0002 (14) | 0.0021 (15) |
| N4 | 0.0155 (17) | 0.0140 (17) | 0.027 (2) | −0.0007 (14) | −0.0055 (15) | −0.0017 (15) |
| N5 | 0.0146 (18) | 0.0144 (19) | 0.037 (2) | −0.0030 (14) | −0.0063 (17) | 0.0027 (16) |
| C1 | 0.0154 (18) | 0.0128 (18) | 0.0183 (19) | 0.0004 (16) | 0.0024 (16) | 0.0000 (17) |
| C2 | 0.0151 (18) | 0.017 (2) | 0.018 (2) | −0.0021 (17) | 0.0015 (16) | 0.0000 (18) |
| C3 | 0.0138 (17) | 0.0147 (16) | 0.0168 (17) | 0.0002 (17) | 0.0041 (14) | −0.0008 (19) |
| C4 | 0.0211 (19) | 0.0130 (16) | 0.0141 (18) | 0.0003 (18) | −0.0009 (15) | −0.0020 (19) |
| C5 | 0.0129 (19) | 0.020 (2) | 0.021 (2) | −0.0008 (16) | −0.0049 (16) | −0.0015 (17) |
| C6 | 0.022 (2) | 0.019 (2) | 0.024 (2) | 0.0083 (18) | −0.0040 (18) | −0.0040 (18) |
| C7 | 0.032 (2) | 0.0132 (17) | 0.0169 (18) | −0.0022 (19) | −0.0026 (18) | 0.000 (2) |
| C8 | 0.025 (2) | 0.017 (2) | 0.027 (2) | −0.0084 (17) | 0.0001 (19) | 0.0010 (18) |
| C9 | 0.018 (2) | 0.0148 (19) | 0.021 (2) | −0.0005 (16) | −0.0018 (17) | −0.0002 (17) |
| C10 | 0.047 (3) | 0.0130 (18) | 0.030 (2) | 0.002 (2) | 0.003 (2) | 0.001 (2) |
| O1 | 0.0219 (16) | 0.0158 (13) | 0.0323 (18) | −0.0005 (13) | −0.0035 (13) | 0.0004 (14) |
| O2 | 0.0205 (15) | 0.0135 (14) | 0.037 (2) | −0.0021 (12) | −0.0022 (14) | 0.0019 (14) |
| C11 | 0.031 (3) | 0.024 (2) | 0.039 (3) | −0.013 (2) | 0.019 (2) | −0.015 (2) |
| C12 | 0.025 (2) | 0.020 (2) | 0.034 (3) | 0.0007 (18) | 0.014 (2) | −0.007 (2) |
| C13 | 0.019 (2) | 0.0170 (19) | 0.028 (3) | −0.0016 (16) | 0.0145 (19) | −0.0006 (17) |
| C14 | 0.032 (3) | 0.019 (2) | 0.033 (3) | 0.0043 (19) | 0.015 (2) | 0.003 (2) |
| C15 | 0.041 (3) | 0.020 (2) | 0.036 (3) | 0.008 (2) | 0.020 (2) | 0.009 (2) |
| C16 | 0.052 (3) | 0.0146 (19) | 0.045 (3) | −0.001 (2) | 0.034 (2) | −0.005 (3) |
| C17 | 0.074 (4) | 0.017 (2) | 0.058 (4) | −0.008 (3) | 0.041 (3) | −0.005 (3) |
| C18 | 0.019 (2) | 0.0158 (19) | 0.026 (2) | 0.0017 (17) | 0.0062 (18) | −0.002 (2) |
| N1—C3 | 1.333 (5) | C9—H9A | 0.9500 |
| N1—C1 | 1.360 (5) | C10—H10A | 0.9800 |
| N2—C2 | 1.340 (5) | C10—H10B | 0.9800 |
| N2—C1 | 1.342 (6) | C10—H10C | 0.9800 |
| N3—C3 | 1.342 (5) | O1—C18 | 1.215 (5) |
| N3—C2 | 1.350 (5) | O2—C18 | 1.324 (5) |
| N4—C1 | 1.326 (5) | O2—H1O2 | 0.77 (6) |
| N4—H1N4 | 0.97 (6) | C11—C16 | 1.380 (8) |
| N4—H2N4 | 0.849 (11) | C11—C12 | 1.395 (6) |
| N5—C2 | 1.351 (5) | C11—H11A | 0.9500 |
| N5—H1N5 | 0.90 (6) | C12—C13 | 1.393 (6) |
| N5—H2N5 | 0.89 (6) | C12—H12A | 0.9500 |
| C3—C4 | 1.487 (5) | C13—C14 | 1.398 (6) |
| C4—C9 | 1.390 (6) | C13—C18 | 1.498 (6) |
| C4—C5 | 1.398 (6) | C14—C15 | 1.384 (6) |
| C5—C6 | 1.382 (6) | C14—H14A | 0.9500 |
| C5—H5A | 0.9500 | C15—C16 | 1.386 (8) |
| C6—C7 | 1.392 (7) | C15—H15A | 0.9500 |
| C6—H6A | 0.9500 | C16—C17 | 1.523 (6) |
| C7—C8 | 1.378 (6) | C17—H17A | 0.9800 |
| C7—C10 | 1.512 (5) | C17—H17B | 0.9800 |
| C8—C9 | 1.394 (6) | C17—H17C | 0.9800 |
| C8—H8A | 0.9500 | ||
| C3—N1—C1 | 114.8 (3) | C8—C9—H9A | 120.0 |
| C2—N2—C1 | 115.5 (3) | C7—C10—H10A | 109.5 |
| C3—N3—C2 | 113.9 (3) | C7—C10—H10B | 109.5 |
| C1—N4—H1N4 | 120 (3) | H10A—C10—H10B | 109.5 |
| C1—N4—H2N4 | 116 (4) | C7—C10—H10C | 109.5 |
| H1N4—N4—H2N4 | 122 (5) | H10A—C10—H10C | 109.5 |
| C2—N5—H1N5 | 123 (4) | H10B—C10—H10C | 109.5 |
| C2—N5—H2N5 | 119 (4) | C18—O2—H1O2 | 113 (5) |
| H1N5—N5—H2N5 | 115 (5) | C16—C11—C12 | 121.4 (5) |
| N4—C1—N2 | 117.9 (4) | C16—C11—H11A | 119.3 |
| N4—C1—N1 | 118.0 (4) | C12—C11—H11A | 119.3 |
| N2—C1—N1 | 124.1 (4) | C13—C12—C11 | 119.2 (5) |
| N2—C2—N3 | 125.4 (4) | C13—C12—H12A | 120.4 |
| N2—C2—N5 | 117.7 (4) | C11—C12—H12A | 120.4 |
| N3—C2—N5 | 116.9 (4) | C12—C13—C14 | 119.9 (4) |
| N1—C3—N3 | 126.3 (3) | C12—C13—C18 | 121.7 (4) |
| N1—C3—C4 | 116.9 (4) | C14—C13—C18 | 118.5 (4) |
| N3—C3—C4 | 116.8 (3) | C15—C14—C13 | 119.4 (5) |
| C9—C4—C5 | 118.8 (3) | C15—C14—H14A | 120.3 |
| C9—C4—C3 | 121.0 (4) | C13—C14—H14A | 120.3 |
| C5—C4—C3 | 120.2 (4) | C14—C15—C16 | 121.5 (5) |
| C6—C5—C4 | 120.6 (4) | C14—C15—H15A | 119.2 |
| C6—C5—H5A | 119.7 | C16—C15—H15A | 119.2 |
| C4—C5—H5A | 119.7 | C11—C16—C15 | 118.6 (4) |
| C5—C6—C7 | 120.6 (4) | C11—C16—C17 | 121.0 (6) |
| C5—C6—H6A | 119.7 | C15—C16—C17 | 120.5 (6) |
| C7—C6—H6A | 119.7 | C16—C17—H17A | 109.5 |
| C8—C7—C6 | 118.9 (4) | C16—C17—H17B | 109.5 |
| C8—C7—C10 | 120.7 (4) | H17A—C17—H17B | 109.5 |
| C6—C7—C10 | 120.4 (4) | C16—C17—H17C | 109.5 |
| C7—C8—C9 | 121.2 (4) | H17A—C17—H17C | 109.5 |
| C7—C8—H8A | 119.4 | H17B—C17—H17C | 109.5 |
| C9—C8—H8A | 119.4 | O1—C18—O2 | 123.8 (4) |
| C4—C9—C8 | 120.0 (4) | O1—C18—C13 | 122.5 (4) |
| C4—C9—H9A | 120.0 | O2—C18—C13 | 113.7 (4) |
| C2—N2—C1—N4 | −179.5 (4) | C5—C6—C7—C10 | 179.1 (5) |
| C2—N2—C1—N1 | −0.5 (7) | C6—C7—C8—C9 | −0.2 (8) |
| C3—N1—C1—N4 | 179.7 (4) | C10—C7—C8—C9 | −179.2 (4) |
| C3—N1—C1—N2 | 0.7 (7) | C5—C4—C9—C8 | −0.2 (7) |
| C1—N2—C2—N3 | 0.3 (7) | C3—C4—C9—C8 | −178.1 (4) |
| C1—N2—C2—N5 | −178.5 (4) | C7—C8—C9—C4 | 0.3 (7) |
| C3—N3—C2—N2 | −0.3 (7) | C16—C11—C12—C13 | −0.2 (7) |
| C3—N3—C2—N5 | 178.5 (4) | C11—C12—C13—C14 | −0.1 (7) |
| C1—N1—C3—N3 | −0.7 (8) | C11—C12—C13—C18 | 179.6 (4) |
| C1—N1—C3—C4 | 179.3 (4) | C12—C13—C14—C15 | 0.6 (7) |
| C2—N3—C3—N1 | 0.5 (8) | C18—C13—C14—C15 | −179.2 (5) |
| C2—N3—C3—C4 | −179.5 (4) | C13—C14—C15—C16 | −0.7 (8) |
| N1—C3—C4—C9 | 28.0 (7) | C12—C11—C16—C15 | 0.2 (8) |
| N3—C3—C4—C9 | −152.0 (5) | C12—C11—C16—C17 | 179.5 (5) |
| N1—C3—C4—C5 | −149.9 (5) | C14—C15—C16—C11 | 0.3 (9) |
| N3—C3—C4—C5 | 30.1 (7) | C14—C15—C16—C17 | −179.0 (6) |
| C9—C4—C5—C6 | 0.1 (7) | C12—C13—C18—O1 | −173.4 (4) |
| C3—C4—C5—C6 | 178.0 (4) | C14—C13—C18—O1 | 6.4 (7) |
| C4—C5—C6—C7 | −0.1 (7) | C12—C13—C18—O2 | 6.4 (6) |
| C5—C6—C7—C8 | 0.1 (8) | C14—C13—C18—O2 | −173.8 (4) |
| H··· | ||||
| O2—H1 | 0.77 (6) | 1.92 (6) | 2.682 (4) | 171 (6) |
| N4—H1 | 0.97 (6) | 1.98 (6) | 2.936 (5) | 169 (6) |
| N4—H2 | 0.84 (4) | 2.26 (4) | 3.099 (5) | 172 (4) |
| N5—H1 | 0.90 (6) | 2.11 (6) | 3.003 (5) | 173 (5) |
| C10—H10 | 0.98 | 2.83 | 3.723 (6) | 152 |
Hydrogen-bond geometry (Å, °)
Cg2 is the centroid of the C4–C9 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H1 | 0.77 (6) | 1.92 (6) | 2.682 (4) | 171 (6) |
| N4—H1 | 0.97 (6) | 1.98 (6) | 2.936 (5) | 169 (6) |
| N4—H2 | 0.84 (4) | 2.26 (4) | 3.099 (5) | 172 (4) |
| N5—H1 | 0.90 (6) | 2.11 (6) | 3.003 (5) | 173 (5) |
| C10—H10 | 0.98 | 2.83 | 3.723 (6) | 152 |
Symmetry codes: (i) ; (ii) ; (iii) .