| Literature DB >> 23795120 |
Youssef Kandri Rodi1, Amal Haoudi, Frédéric Capet, Ahmed Mazzah, El Mokhtar Essassi, Lahcen El Ammari.
Abstract
The fused imidazole and pyridine rings in the title compound, C13H10BrN3O, are linked to a benzyl group. The fused ring system is essentially planar, the largest deviation from the mean plane being 0.006 (2) Å. The phenyl ring is not coplanar with the fused ring system, as indicated by the dihedral angle of 67.04 (12)°. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, forming inversion dimers.Entities:
Year: 2013 PMID: 23795120 PMCID: PMC3685101 DOI: 10.1107/S1600536813013780
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H10BrN3O | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 358 K |
| Mo | |
| Cell parameters from 2772 reflections | |
| θ = 1.5–27.5° | |
| α = 107.611 (2)° | µ = 3.40 mm−1 |
| β = 90.628 (3)° | |
| γ = 99.784 (3)° | Platelet, colourless |
| 0.26 × 0.19 × 0.02 mm |
| Bruker APEXII CCD diffractometer | 2772 independent reflections |
| Radiation source: microfocus source | 2169 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.5°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 13819 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H-atom parameters constrained | |
| 2772 reflections | (Δ/σ)max < 0.001 |
| 163 parameters | Δρmax = 0.56 e Å−3 |
| 0 restraints | Δρmin = −0.55 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.26054 (8) | 0.40434 (3) | 0.14153 (2) | 0.06526 (14) | |
| C1 | 0.6829 (7) | 0.6528 (3) | 0.2362 (2) | 0.0522 (7) | |
| H1 | 0.7269 | 0.6048 | 0.2779 | 0.063* | |
| C2 | 0.4658 (7) | 0.5871 (3) | 0.15899 (19) | 0.0463 (6) | |
| C3 | 0.3894 (6) | 0.6511 (3) | 0.09261 (18) | 0.0448 (6) | |
| H3 | 0.2437 | 0.6073 | 0.0395 | 0.054* | |
| C4 | 0.5450 (6) | 0.7837 (2) | 0.11128 (16) | 0.0373 (5) | |
| C5 | 0.7610 (6) | 0.8423 (2) | 0.19198 (16) | 0.0379 (5) | |
| C6 | 0.7491 (6) | 0.9986 (2) | 0.11485 (16) | 0.0387 (5) | |
| C7 | 1.1131 (6) | 1.0750 (3) | 0.26618 (18) | 0.0433 (6) | |
| H7A | 1.2362 | 1.1371 | 0.2363 | 0.052* | |
| H7B | 1.2615 | 1.0289 | 0.2896 | 0.052* | |
| C8 | 0.9545 (5) | 1.1565 (2) | 0.35104 (16) | 0.0381 (5) | |
| C9 | 0.8773 (7) | 1.2797 (3) | 0.3530 (2) | 0.0503 (6) | |
| H9 | 0.9188 | 1.3126 | 0.3008 | 0.060* | |
| C10 | 0.7386 (8) | 1.3551 (3) | 0.4320 (2) | 0.0644 (8) | |
| H10 | 0.6870 | 1.4385 | 0.4327 | 0.077* | |
| C11 | 0.6766 (8) | 1.3071 (4) | 0.5096 (2) | 0.0647 (8) | |
| H11 | 0.5865 | 1.3586 | 0.5632 | 0.078* | |
| C12 | 0.7474 (8) | 1.1844 (4) | 0.5076 (2) | 0.0656 (8) | |
| H12 | 0.7029 | 1.1513 | 0.5596 | 0.079* | |
| C13 | 0.8849 (7) | 1.1088 (3) | 0.42872 (19) | 0.0536 (7) | |
| H13 | 0.9313 | 1.0245 | 0.4278 | 0.064* | |
| N1 | 0.8370 (6) | 0.7832 (2) | 0.25554 (15) | 0.0479 (5) | |
| N2 | 0.8850 (5) | 0.9739 (2) | 0.19325 (14) | 0.0385 (4) | |
| N3 | 0.5415 (5) | 0.8819 (2) | 0.06533 (14) | 0.0412 (5) | |
| H14 | 0.4262 | 0.8712 | 0.0135 | 0.049* | |
| O1 | 0.8058 (5) | 1.10622 (18) | 0.09525 (13) | 0.0507 (4) |
| Br1 | 0.0925 (3) | 0.04191 (17) | 0.0673 (2) | 0.00734 (15) | 0.02819 (17) | 0.02745 (14) |
| C1 | 0.0752 (19) | 0.0483 (15) | 0.0458 (15) | 0.0241 (14) | 0.0182 (14) | 0.0259 (13) |
| C2 | 0.0615 (16) | 0.0352 (13) | 0.0453 (14) | 0.0094 (12) | 0.0203 (12) | 0.0159 (11) |
| C3 | 0.0572 (15) | 0.0369 (13) | 0.0378 (13) | 0.0036 (11) | 0.0109 (11) | 0.0103 (11) |
| C4 | 0.0468 (13) | 0.0346 (12) | 0.0323 (11) | 0.0084 (10) | 0.0083 (10) | 0.0121 (10) |
| C5 | 0.0437 (13) | 0.0369 (12) | 0.0352 (12) | 0.0119 (10) | 0.0100 (10) | 0.0113 (10) |
| C6 | 0.0460 (13) | 0.0358 (12) | 0.0345 (12) | 0.0060 (10) | 0.0040 (10) | 0.0119 (10) |
| C7 | 0.0357 (12) | 0.0496 (14) | 0.0428 (13) | 0.0047 (11) | −0.0023 (10) | 0.0134 (12) |
| C8 | 0.0321 (12) | 0.0419 (13) | 0.0355 (12) | −0.0009 (10) | −0.0081 (9) | 0.0094 (10) |
| C9 | 0.0581 (16) | 0.0427 (14) | 0.0511 (15) | 0.0044 (12) | 0.0053 (12) | 0.0185 (12) |
| C10 | 0.074 (2) | 0.0440 (16) | 0.074 (2) | 0.0150 (15) | 0.0095 (17) | 0.0142 (15) |
| C11 | 0.069 (2) | 0.065 (2) | 0.0518 (17) | 0.0155 (16) | 0.0109 (14) | 0.0036 (15) |
| C12 | 0.080 (2) | 0.079 (2) | 0.0422 (15) | 0.0184 (18) | 0.0089 (14) | 0.0238 (15) |
| C13 | 0.0682 (18) | 0.0556 (17) | 0.0426 (14) | 0.0191 (14) | 0.0021 (13) | 0.0194 (13) |
| N1 | 0.0618 (13) | 0.0493 (13) | 0.0397 (11) | 0.0181 (11) | 0.0045 (10) | 0.0199 (10) |
| N2 | 0.0435 (11) | 0.0369 (10) | 0.0337 (10) | 0.0055 (9) | −0.0001 (8) | 0.0099 (8) |
| N3 | 0.0544 (12) | 0.0349 (10) | 0.0324 (10) | −0.0006 (9) | −0.0056 (9) | 0.0125 (8) |
| O1 | 0.0670 (12) | 0.0366 (9) | 0.0466 (10) | −0.0043 (8) | −0.0091 (9) | 0.0177 (8) |
| Br1—C2 | 1.898 (3) | C7—C8 | 1.507 (3) |
| C1—N1 | 1.350 (4) | C7—H7A | 0.9700 |
| C1—C2 | 1.368 (4) | C7—H7B | 0.9700 |
| C1—H1 | 0.9300 | C8—C9 | 1.372 (4) |
| C2—C3 | 1.392 (4) | C8—C13 | 1.380 (4) |
| C3—C4 | 1.373 (3) | C9—C10 | 1.381 (4) |
| C3—H3 | 0.9300 | C9—H9 | 0.9300 |
| C4—N3 | 1.385 (3) | C10—C11 | 1.375 (5) |
| C4—C5 | 1.392 (3) | C10—H10 | 0.9300 |
| C5—N1 | 1.320 (3) | C11—C12 | 1.357 (5) |
| C5—N2 | 1.380 (3) | C11—H11 | 0.9300 |
| C6—O1 | 1.227 (3) | C12—C13 | 1.378 (4) |
| C6—N3 | 1.367 (3) | C12—H12 | 0.9300 |
| C6—N2 | 1.381 (3) | C13—H13 | 0.9300 |
| C7—N2 | 1.458 (3) | N3—H14 | 0.8600 |
| N1—C1—C2 | 123.9 (2) | C9—C8—C7 | 120.9 (2) |
| N1—C1—H1 | 118.1 | C13—C8—C7 | 120.5 (2) |
| C2—C1—H1 | 118.1 | C8—C9—C10 | 120.6 (3) |
| C1—C2—C3 | 121.7 (2) | C8—C9—H9 | 119.7 |
| C1—C2—Br1 | 119.55 (19) | C10—C9—H9 | 119.7 |
| C3—C2—Br1 | 118.8 (2) | C11—C10—C9 | 120.0 (3) |
| C4—C3—C2 | 115.1 (2) | C11—C10—H10 | 120.0 |
| C4—C3—H3 | 122.5 | C9—C10—H10 | 120.0 |
| C2—C3—H3 | 122.5 | C12—C11—C10 | 119.8 (3) |
| C3—C4—N3 | 133.9 (2) | C12—C11—H11 | 120.1 |
| C3—C4—C5 | 119.2 (2) | C10—C11—H11 | 120.1 |
| N3—C4—C5 | 106.8 (2) | C11—C12—C13 | 120.2 (3) |
| N1—C5—N2 | 125.9 (2) | C11—C12—H12 | 119.9 |
| N1—C5—C4 | 126.6 (2) | C13—C12—H12 | 119.9 |
| N2—C5—C4 | 107.5 (2) | C12—C13—C8 | 120.7 (3) |
| O1—C6—N3 | 127.5 (2) | C12—C13—H13 | 119.6 |
| O1—C6—N2 | 125.6 (2) | C8—C13—H13 | 119.6 |
| N3—C6—N2 | 107.0 (2) | C5—N1—C1 | 113.6 (2) |
| N2—C7—C8 | 113.10 (19) | C5—N2—C6 | 109.01 (19) |
| N2—C7—H7A | 109.0 | C5—N2—C7 | 126.9 (2) |
| C8—C7—H7A | 109.0 | C6—N2—C7 | 124.1 (2) |
| N2—C7—H7B | 109.0 | C6—N3—C4 | 109.67 (19) |
| C8—C7—H7B | 109.0 | C6—N3—H14 | 125.2 |
| H7A—C7—H7B | 107.8 | C4—N3—H14 | 125.2 |
| C9—C8—C13 | 118.6 (2) | ||
| N1—C1—C2—C3 | 0.8 (4) | C7—C8—C13—C12 | 178.3 (3) |
| N1—C1—C2—Br1 | −178.9 (2) | N2—C5—N1—C1 | −179.1 (2) |
| C1—C2—C3—C4 | −0.6 (4) | C4—C5—N1—C1 | 0.3 (4) |
| Br1—C2—C3—C4 | 179.11 (17) | C2—C1—N1—C5 | −0.6 (4) |
| C2—C3—C4—N3 | 179.7 (2) | N1—C5—N2—C6 | 179.6 (2) |
| C2—C3—C4—C5 | 0.3 (3) | C4—C5—N2—C6 | 0.2 (2) |
| C3—C4—C5—N1 | −0.1 (4) | N1—C5—N2—C7 | −2.6 (4) |
| N3—C4—C5—N1 | −179.7 (2) | C4—C5—N2—C7 | 178.0 (2) |
| C3—C4—C5—N2 | 179.3 (2) | O1—C6—N2—C5 | 179.4 (2) |
| N3—C4—C5—N2 | −0.3 (3) | N3—C6—N2—C5 | −0.1 (3) |
| N2—C7—C8—C9 | −93.6 (3) | O1—C6—N2—C7 | 1.5 (4) |
| N2—C7—C8—C13 | 86.6 (3) | N3—C6—N2—C7 | −177.9 (2) |
| C13—C8—C9—C10 | 1.2 (4) | C8—C7—N2—C5 | −86.5 (3) |
| C7—C8—C9—C10 | −178.5 (3) | C8—C7—N2—C6 | 91.0 (3) |
| C8—C9—C10—C11 | 0.0 (5) | O1—C6—N3—C4 | −179.6 (2) |
| C9—C10—C11—C12 | −1.1 (5) | N2—C6—N3—C4 | −0.1 (3) |
| C10—C11—C12—C13 | 0.9 (5) | C3—C4—N3—C6 | −179.2 (3) |
| C11—C12—C13—C8 | 0.4 (5) | C5—C4—N3—C6 | 0.3 (3) |
| C9—C8—C13—C12 | −1.4 (4) |
| H··· | ||||
| N3—H14···O1i | 0.86 | 1.95 | 2.789 (3) | 166 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N3—H14⋯O1i | 0.86 | 1.95 | 2.789 (3) | 166 |
Symmetry code: (i) .