Literature DB >> 23795117

N,N-Di-methyl-dehydro-abietyl-ammonium chloride ethanol monosolvate.

Xiu-Zhi Huang1, Xiao-Ping Rao, Yan-Jie Cui.   

Abstract

The title compound {systematic name: 1-[(1R,4aS,10aR)-7-isopropyl-1,4a-dimethyl-1,2,3,4,4a,9,10,10a-octa-hydro-phenan-thren-1-yl]-N,N-di-methyl-methanaminium chloride ethanol monosolvate}, C22H36N(+)·Cl(-)·C2H6O, was synthesized from dehydroabietylamine by N-methyl-ation with formaldehyde/formic acid and transformation into the hydro-chloride. The de-hydro-abietyl moiety exhibits the usual conformation with the two cyclo-hexane rings in chair and half-chair conformations and a trans-ring junction. The crystal structure is built up from columns of the de-hydro-abietyl moieties stacked along the a axis. These columns are held together by the chloride ions via N-H⋯Cl and C-H⋯Cl inter-actions, which establish a two-dimensional network parallel to (010). The ethanol solvent mol-ecules are located between the columns and anchored via O-H⋯Cl hydrogen bonds.

Entities:  

Year:  2013        PMID: 23795117      PMCID: PMC3685098          DOI: 10.1107/S1600536813013846

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of de­hydro­abietyl­amine derivatives, see: Goodson et al. (1999 ▶); Rao et al. (2008 ▶); Wilkerson et al. (1993 ▶); For the crystal structures of de­hydro­abietic acid deriv­atives, see Rao et al. (2006 ▶, 2009 ▶).

Experimental

Crystal data

C22H36N+·Cl−·C2H6O M = 396.04 Monoclinic, a = 6.0560 (12) Å b = 10.963 (2) Å c = 18.554 (4) Å β = 98.62 (3)° V = 1217.9 (4) Å3 Z = 2 Mo Kα radiation μ = 0.17 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.951, T max = 0.983 4924 measured reflections 4476 independent reflections 2605 reflections with I > 2σ(I) R int = 0.026 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.074 wR(F 2) = 0.190 S = 0.99 4476 reflections 250 parameters 2 restraints H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack (1983 ▶), 2102 Friedel pairs Flack parameter: −0.02 (13) Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813013846/qk2059sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813013846/qk2059Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813013846/qk2059Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H36N+·Cl·C2H6OF(000) = 436
Mr = 396.04Dx = 1.080 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 25 reflections
a = 6.0560 (12) Åθ = 9–13°
b = 10.963 (2) ŵ = 0.17 mm1
c = 18.554 (4) ÅT = 293 K
β = 98.62 (3)°Block, white
V = 1217.9 (4) Å30.30 × 0.20 × 0.10 mm
Z = 2
Enraf–Nonius CAD-4 diffractometer2605 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.026
Graphite monochromatorθmax = 25.4°, θmin = 1.1°
ω/2θ scansh = 0→7
Absorption correction: ψ scan (North et al., 1968)k = −13→13
Tmin = 0.951, Tmax = 0.983l = −22→22
4924 measured reflections3 standard reflections every 200 reflections
4476 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.074H-atom parameters constrained
wR(F2) = 0.190w = 1/[σ2(Fo2) + (0.080P)2 + 0.5P] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max < 0.001
4476 reflectionsΔρmax = 0.27 e Å3
250 parametersΔρmin = −0.20 e Å3
2 restraintsAbsolute structure: Flack (1983), 2102 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.02 (13)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.1469 (2)0.07595 (14)0.50514 (8)0.0890 (5)
C10.4016 (7)0.1919 (4)0.3221 (2)0.0511 (11)
C20.4933 (8)0.0669 (5)0.3522 (2)0.0642 (12)
H2A0.65220.07470.36890.077*
H2B0.42210.04560.39390.077*
C30.4563 (11)−0.0354 (5)0.2971 (3)0.0810 (17)
H3A0.2973−0.04800.28260.097*
H3B0.5197−0.11030.31910.097*
C40.5646 (9)−0.0053 (4)0.2303 (3)0.0669 (14)
H4A0.5429−0.07300.19630.080*
H4B0.72390.00560.24490.080*
C50.4646 (7)0.1118 (4)0.1920 (3)0.0554 (12)
C60.5008 (8)0.2166 (4)0.2491 (2)0.0567 (11)
H6A0.66280.22280.26350.068*
C70.5873 (8)0.1477 (5)0.1286 (3)0.0652 (13)
C80.6409 (8)0.2667 (5)0.1122 (3)0.0654 (13)
C90.5920 (11)0.3702 (5)0.1597 (3)0.0817 (17)
H9A0.53210.43760.12900.098*
H9B0.73100.39740.18810.098*
C100.4279 (9)0.3391 (5)0.2118 (3)0.0700 (14)
H10A0.27790.33220.18510.084*
H10B0.42840.40280.24810.084*
C110.6423 (9)0.0552 (5)0.0795 (3)0.0705 (14)
H11A0.6097−0.02590.08810.085*
C120.7413 (8)0.0836 (6)0.0204 (3)0.0741 (14)
H12A0.77690.0214−0.00990.089*
C130.7905 (9)0.2049 (6)0.0044 (3)0.0745 (15)
C140.7355 (9)0.2915 (5)0.0515 (3)0.0710 (14)
H14A0.76430.37260.04160.085*
C150.2191 (8)0.0887 (6)0.1565 (3)0.0806 (15)
H15A0.21720.03780.11440.121*
H15B0.14840.16520.14230.121*
H15C0.14000.04900.19110.121*
C160.1456 (8)0.1985 (5)0.3140 (3)0.0741 (14)
H16A0.10030.19920.36140.111*
H16B0.08210.12870.28720.111*
H16C0.09450.27160.28820.111*
C170.5076 (9)0.2897 (4)0.3771 (2)0.0643 (13)
H17A0.66890.28340.38190.077*
H17B0.46550.36990.35770.077*
N0.4394 (6)0.2782 (3)0.4510 (2)0.0579 (10)
H0B0.35630.20900.45080.069*
C180.6406 (8)0.2623 (6)0.5085 (3)0.0756 (15)
H18A0.59280.24830.55490.113*
H18B0.73080.33460.51110.113*
H18C0.72650.19370.49630.113*
C190.3003 (9)0.3800 (5)0.4710 (3)0.0760 (15)
H19A0.16970.38780.43490.114*
H19B0.38470.45440.47330.114*
H19C0.25610.36400.51760.114*
C200.9025 (11)0.2391 (7)−0.0617 (3)0.0890 (18)
H20A0.90400.3285−0.06300.107*
C210.7518 (13)0.1982 (8)−0.1330 (4)0.124 (3)
H21A0.80990.2308−0.17440.186*
H21B0.60260.2277−0.13300.186*
H21C0.74990.1107−0.13570.186*
C221.1396 (12)0.2007 (9)−0.0568 (4)0.136 (3)
H22A1.22760.2417−0.01670.204*
H22B1.19390.2214−0.10130.204*
H22C1.15030.1141−0.04940.204*
O0.1487 (19)0.0080 (8)0.6670 (5)0.246 (5)
H0A0.14460.02640.62390.295*
C230.117 (4)0.2011 (17)0.6937 (7)0.332 (14)
H23A0.02670.26200.71230.498*
H23B0.12690.21820.64360.498*
H23C0.26420.20200.72160.498*
C240.022 (3)0.0876 (13)0.6992 (7)0.255 (8)
H24B0.02240.06600.74990.306*
H24A−0.13090.08700.67440.306*
U11U22U33U12U13U23
Cl0.0935 (10)0.0739 (8)0.1121 (11)−0.0040 (8)0.0564 (9)0.0053 (9)
C10.044 (2)0.047 (3)0.063 (3)0.003 (2)0.013 (2)−0.001 (2)
C20.069 (3)0.062 (3)0.065 (3)0.017 (3)0.021 (2)0.015 (3)
C30.108 (5)0.055 (3)0.083 (4)0.004 (3)0.022 (4)0.001 (3)
C40.083 (4)0.055 (3)0.066 (3)0.006 (3)0.021 (3)−0.006 (2)
C50.052 (3)0.055 (3)0.059 (3)0.000 (2)0.007 (2)−0.003 (2)
C60.070 (3)0.050 (2)0.052 (2)0.009 (2)0.015 (2)0.005 (2)
C70.062 (3)0.072 (3)0.061 (3)0.010 (3)0.008 (3)0.003 (3)
C80.073 (3)0.064 (3)0.062 (3)0.010 (3)0.020 (3)0.013 (3)
C90.118 (5)0.062 (3)0.073 (3)0.006 (3)0.039 (3)0.011 (3)
C100.077 (4)0.064 (3)0.070 (3)0.017 (3)0.015 (3)0.007 (3)
C110.087 (4)0.061 (3)0.067 (3)0.001 (3)0.023 (3)−0.004 (3)
C120.070 (3)0.089 (4)0.061 (3)0.007 (4)0.006 (3)−0.013 (3)
C130.068 (3)0.088 (4)0.068 (3)0.003 (3)0.011 (3)0.020 (3)
C140.077 (4)0.071 (3)0.067 (3)−0.003 (3)0.016 (3)0.005 (3)
C150.071 (3)0.093 (4)0.076 (3)−0.015 (3)0.007 (3)−0.008 (3)
C160.053 (3)0.084 (4)0.084 (3)0.005 (3)0.007 (3)−0.007 (3)
C170.078 (3)0.060 (3)0.061 (3)−0.013 (3)0.028 (3)0.004 (2)
N0.053 (2)0.052 (2)0.070 (2)0.0007 (18)0.015 (2)−0.0016 (19)
C180.067 (3)0.087 (4)0.070 (3)0.009 (3)0.000 (3)0.008 (3)
C190.070 (4)0.070 (3)0.091 (4)0.016 (3)0.022 (3)−0.015 (3)
C200.094 (4)0.109 (5)0.069 (3)0.006 (4)0.026 (3)0.020 (3)
C210.113 (5)0.172 (8)0.081 (4)−0.020 (5)−0.001 (4)0.028 (5)
C220.099 (5)0.192 (9)0.124 (6)0.007 (6)0.043 (5)0.050 (6)
O0.380 (14)0.188 (7)0.170 (7)0.130 (8)0.042 (8)0.004 (6)
C230.54 (3)0.29 (2)0.171 (12)−0.32 (2)0.062 (15)−0.073 (12)
C240.45 (3)0.182 (13)0.162 (10)0.083 (18)0.139 (14)0.020 (10)
C1—C161.537 (6)C15—H15B0.9600
C1—C21.551 (6)C15—H15C0.9600
C1—C171.551 (6)C16—H16A0.9600
C1—C61.585 (6)C16—H16B0.9600
C2—C31.511 (7)C16—H16C0.9600
C2—H2A0.9700C17—N1.496 (5)
C2—H2B0.9700C17—H17A0.9700
C3—C41.523 (7)C17—H17B0.9700
C3—H3A0.9700N—C191.479 (6)
C3—H3B0.9700N—C181.505 (6)
C4—C51.547 (6)N—H0B0.9100
C4—H4A0.9700C18—H18A0.9600
C4—H4B0.9700C18—H18B0.9600
C5—C71.533 (7)C18—H18C0.9600
C5—C151.554 (6)C19—H19A0.9600
C5—C61.556 (6)C19—H19B0.9600
C6—C101.544 (6)C19—H19C0.9600
C6—H6A0.9800C20—C221.486 (9)
C7—C81.390 (7)C20—C211.557 (9)
C7—C111.436 (7)C20—H20A0.9800
C8—C141.365 (7)C21—H21A0.9600
C8—C91.494 (7)C21—H21B0.9600
C9—C101.524 (7)C21—H21C0.9600
C9—H9A0.9700C22—H22A0.9600
C9—H9B0.9700C22—H22B0.9600
C10—H10A0.9700C22—H22C0.9600
C10—H10B0.9700O—C241.358 (13)
C11—C121.361 (7)O—H0A0.8200
C11—H11A0.9300C23—C241.382 (13)
C12—C131.404 (8)C23—H23A0.9600
C12—H12A0.9300C23—H23B0.9600
C13—C141.365 (7)C23—H23C0.9600
C13—C201.534 (7)C24—H24B0.9700
C14—H14A0.9300C24—H24A0.9700
C15—H15A0.9600
C16—C1—C2112.2 (4)C5—C15—H15B109.5
C16—C1—C17110.1 (4)H15A—C15—H15B109.5
C2—C1—C17106.4 (4)C5—C15—H15C109.5
C16—C1—C6114.5 (4)H15A—C15—H15C109.5
C2—C1—C6107.3 (3)H15B—C15—H15C109.5
C17—C1—C6105.8 (3)C1—C16—H16A109.5
C3—C2—C1113.8 (4)C1—C16—H16B109.5
C3—C2—H2A108.8H16A—C16—H16B109.5
C1—C2—H2A108.8C1—C16—H16C109.5
C3—C2—H2B108.8H16A—C16—H16C109.5
C1—C2—H2B108.8H16B—C16—H16C109.5
H2A—C2—H2B107.7N—C17—C1113.7 (4)
C2—C3—C4110.5 (4)N—C17—H17A108.8
C2—C3—H3A109.5C1—C17—H17A108.8
C4—C3—H3A109.5N—C17—H17B108.8
C2—C3—H3B109.5C1—C17—H17B108.8
C4—C3—H3B109.5H17A—C17—H17B107.7
H3A—C3—H3B108.1C19—N—C17114.3 (4)
C3—C4—C5111.6 (4)C19—N—C18109.9 (4)
C3—C4—H4A109.3C17—N—C18110.8 (4)
C5—C4—H4A109.3C19—N—H0B107.1
C3—C4—H4B109.3C17—N—H0B107.1
C5—C4—H4B109.3C18—N—H0B107.1
H4A—C4—H4B108.0N—C18—H18A109.5
C7—C5—C4111.3 (4)N—C18—H18B109.5
C7—C5—C15105.1 (4)H18A—C18—H18B109.5
C4—C5—C15110.1 (4)N—C18—H18C109.5
C7—C5—C6107.3 (4)H18A—C18—H18C109.5
C4—C5—C6107.1 (4)H18B—C18—H18C109.5
C15—C5—C6115.9 (4)N—C19—H19A109.5
C10—C6—C5109.6 (4)N—C19—H19B109.5
C10—C6—C1114.3 (4)H19A—C19—H19B109.5
C5—C6—C1115.0 (4)N—C19—H19C109.5
C10—C6—H6A105.7H19A—C19—H19C109.5
C5—C6—H6A105.7H19B—C19—H19C109.5
C1—C6—H6A105.7C22—C20—C13114.9 (5)
C8—C7—C11116.1 (5)C22—C20—C21114.0 (6)
C8—C7—C5124.4 (4)C13—C20—C21109.6 (5)
C11—C7—C5119.5 (4)C22—C20—H20A105.8
C14—C8—C7120.6 (5)C13—C20—H20A105.8
C14—C8—C9118.7 (5)C21—C20—H20A105.8
C7—C8—C9120.7 (4)C20—C21—H21A109.5
C8—C9—C10114.2 (5)C20—C21—H21B109.5
C8—C9—H9A108.7H21A—C21—H21B109.5
C10—C9—H9A108.7C20—C21—H21C109.5
C8—C9—H9B108.7H21A—C21—H21C109.5
C10—C9—H9B108.7H21B—C21—H21C109.5
H9A—C9—H9B107.6C20—C22—H22A109.5
C9—C10—C6108.0 (4)C20—C22—H22B109.5
C9—C10—H10A110.1H22A—C22—H22B109.5
C6—C10—H10A110.1C20—C22—H22C109.5
C9—C10—H10B110.1H22A—C22—H22C109.5
C6—C10—H10B110.1H22B—C22—H22C109.5
H10A—C10—H10B108.4C24—O—H0A109.5
C12—C11—C7121.5 (5)C24—C23—H23A109.5
C12—C11—H11A119.3C24—C23—H23B109.5
C7—C11—H11A119.3H23A—C23—H23B109.5
C11—C12—C13121.3 (5)C24—C23—H23C109.5
C11—C12—H12A119.3H23A—C23—H23C109.5
C13—C12—H12A119.3H23B—C23—H23C109.5
C14—C13—C12116.3 (5)O—C24—C23106.1 (17)
C14—C13—C20121.4 (5)O—C24—H24B110.5
C12—C13—C20122.3 (5)C23—C24—H24B110.5
C8—C14—C13124.2 (5)O—C24—H24A110.5
C8—C14—H14A117.9C23—C24—H24A110.5
C13—C14—H14A117.9H24B—C24—H24A108.7
C5—C15—H15A109.5
C16—C1—C2—C374.3 (5)C5—C7—C8—C14−175.0 (5)
C17—C1—C2—C3−165.2 (4)C11—C7—C8—C9−179.8 (5)
C6—C1—C2—C3−52.3 (5)C5—C7—C8—C93.7 (8)
C1—C2—C3—C458.2 (6)C14—C8—C9—C10162.8 (5)
C2—C3—C4—C5−60.7 (6)C7—C8—C9—C10−16.0 (7)
C3—C4—C5—C7175.3 (4)C8—C9—C10—C647.1 (6)
C3—C4—C5—C15−68.6 (5)C5—C6—C10—C9−68.4 (5)
C3—C4—C5—C658.2 (5)C1—C6—C10—C9160.8 (4)
C7—C5—C6—C1054.1 (5)C8—C7—C11—C120.0 (7)
C4—C5—C6—C10173.8 (4)C5—C7—C11—C12176.7 (4)
C15—C5—C6—C10−63.0 (5)C7—C11—C12—C13−1.0 (8)
C7—C5—C6—C1−175.4 (4)C11—C12—C13—C140.5 (7)
C4—C5—C6—C1−55.8 (5)C11—C12—C13—C20179.8 (5)
C15—C5—C6—C167.5 (5)C7—C8—C14—C13−2.1 (8)
C16—C1—C6—C1055.3 (5)C9—C8—C14—C13179.1 (5)
C2—C1—C6—C10−179.4 (4)C12—C13—C14—C81.0 (8)
C17—C1—C6—C10−66.1 (5)C20—C13—C14—C8−178.3 (5)
C16—C1—C6—C5−72.8 (5)C16—C1—C17—N57.9 (5)
C2—C1—C6—C552.5 (5)C2—C1—C17—N−64.0 (5)
C17—C1—C6—C5165.8 (4)C6—C1—C17—N−178.0 (4)
C4—C5—C7—C8−139.8 (5)C1—C17—N—C19−113.0 (5)
C15—C5—C7—C8101.1 (6)C1—C17—N—C18122.1 (4)
C6—C5—C7—C8−22.8 (6)C14—C13—C20—C22110.1 (7)
C4—C5—C7—C1143.9 (6)C12—C13—C20—C22−69.2 (8)
C15—C5—C7—C11−75.3 (5)C14—C13—C20—C21−120.0 (6)
C6—C5—C7—C11160.8 (4)C12—C13—C20—C2160.8 (8)
C11—C7—C8—C141.5 (7)
D—H···AD—HH···AD···AD—H···A
N—H0B···Cl0.912.273.097 (4)152
O—H0A···Cl0.822.273.092 (9)178
C18—H18B···Cli0.962.783.694 (6)160
C18—H18C···Clii0.962.843.693 (6)149
C2—H2B···Cl0.972.863.775 (5)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N—H0B⋯Cl0.912.273.097 (4)152
O—H0A⋯Cl0.822.273.092 (9)178
C18—H18B⋯Cli 0.962.783.694 (6)160
C18—H18C⋯Clii 0.962.843.693 (6)149
C2—H2B⋯Cl0.972.863.775 (5)158

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Characterization of novel antimicrobial peptoids.

Authors:  B Goodson; A Ehrhardt; S Ng; J Nuss; K Johnson; M Giedlin; R Yamamoto; W H Moos; A Krebber; M Ladner; M B Giacona; C Vitt; J Winter
Journal:  Antimicrob Agents Chemother       Date:  1999-06       Impact factor: 5.191

3.  Dehydro-abietic acid.

Authors:  Xiao-Ping Rao; Zhan-Qian Song; Shi-Bin Shang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09
  3 in total

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