Literature DB >> 23795104

Pyridine-4-carbaldehyde-fumaric acid (2/1).

Bhupinder Sandhu1, Sergiu Draguta, Marina S Fonari, Mikhail Antipin, Tatiana V Timofeeva.   

Abstract

In the title co-crystal, 2C6H5NO·C4H4O4, two crystallographically different hydrogen-bonded trimers are formed, one in which the components occupy general positions, and one generated by an inversion centre. This results in the uncommon situation of Z = 3 for a triclinic crystal. In the formula units, mol-ecules are linked by O-H⋯N hydrogen bonds.

Entities:  

Year:  2013        PMID: 23795104      PMCID: PMC3685085          DOI: 10.1107/S1600536813013445

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the synthetic procedure, see: Aakeroy et al. (2006 ▶); Desiraju (2003 ▶). For the use of pyridine-4-carboxaldehyde in cytokine suppressive drugs, see: Boehm et al. (1996 ▶). For adducts of neutral pyridine derivatives and neutral fumaric acid, see: Bowes et al. (2003 ▶); Aakeroy et al. (2002 ▶, 2006 ▶, 2007 ▶); Batchelor et al. (2000 ▶). For a related structure, see: Liu et al. (2003 ▶).

Experimental

Crystal data

2C6H5NO·C4H4O4 M = 330.29 Triclinic, a = 6.9388 (12) Å b = 10.1962 (18) Å c = 17.002 (3) Å α = 82.450 (3)° β = 78.615 (3)° γ = 80.064 (3)° V = 1155.6 (4) Å3 Z = 3 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.04 × 0.03 × 0.02 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.996, T max = 0.998 11918 measured reflections 5022 independent reflections 4351 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.094 S = 1.06 5022 reflections 337 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813013445/gw2133sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813013445/gw2133Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813013445/gw2133Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C6H5NO·C4H4O4Z = 3
Mr = 330.29F(000) = 516
Triclinic, P1Dx = 1.424 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.9388 (12) ÅCell parameters from 15620 reflections
b = 10.1962 (18) Åθ = 2.5–30.8°
c = 17.002 (3) ŵ = 0.11 mm1
α = 82.450 (3)°T = 100 K
β = 78.615 (3)°Prism, white
γ = 80.064 (3)°0.04 × 0.03 × 0.02 mm
V = 1155.6 (4) Å3
Bruker APEXII CCD diffractometer5022 independent reflections
Radiation source: fine-focus sealed tube4351 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
φ and ω scansθmax = 27.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −8→8
Tmin = 0.996, Tmax = 0.998k = −13→13
11918 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0502P)2 + 0.2407P] where P = (Fo2 + 2Fc2)/3
5022 reflections(Δ/σ)max = 0.001
337 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.03877 (12)0.13984 (9)0.93015 (5)0.02957 (19)
O30.32546 (12)0.76849 (8)0.60910 (4)0.02667 (18)
O20.31931 (13)0.49716 (8)−0.26052 (5)0.02852 (19)
O80.41401 (12)0.85465 (8)0.13133 (4)0.02579 (18)
O90.53088 (12)1.02613 (8)0.16686 (4)0.02420 (18)
H9A0.497 (3)0.9765 (19)0.2235 (11)0.069 (6)*
O60.09363 (12)0.27889 (8)0.18081 (4)0.02574 (18)
O70.22987 (12)0.45738 (8)0.19320 (4)0.02386 (18)
O50.10344 (12)0.24097 (8)0.47468 (4)0.02441 (18)
H50.104 (3)0.222 (2)0.5358 (12)0.076 (6)*
O40.24013 (12)0.41873 (8)0.48845 (4)0.02556 (18)
N10.08206 (13)0.17896 (9)0.62885 (5)0.02060 (19)
N30.44019 (13)0.91008 (9)0.31230 (5)0.02018 (19)
N20.24664 (13)0.50591 (9)0.03924 (5)0.02043 (19)
C40.07788 (15)0.27059 (11)0.67926 (7)0.0227 (2)
H40.09190.35980.65730.027*
C30.05391 (15)0.24005 (11)0.76207 (6)0.0217 (2)
H30.05000.30720.79640.026*
C20.03570 (15)0.10889 (10)0.79403 (6)0.0192 (2)
C60.03953 (15)0.01376 (10)0.74200 (6)0.0204 (2)
H60.0265−0.07630.76220.024*
C50.06278 (15)0.05330 (11)0.65996 (6)0.0208 (2)
H5A0.0652−0.01150.62430.025*
C10.01669 (15)0.06833 (11)0.88228 (6)0.0231 (2)
H1−0.0145−0.01850.90200.028*
C160.40393 (15)0.97924 (10)0.37691 (6)0.0214 (2)
H160.40641.07300.36890.026*
C150.36315 (15)0.91885 (10)0.45471 (6)0.0207 (2)
H150.33470.97060.49930.025*
C140.36431 (14)0.78107 (10)0.46684 (6)0.0184 (2)
C180.40079 (15)0.70913 (10)0.40001 (6)0.0206 (2)
H180.40110.61510.40640.025*
C170.43668 (15)0.77782 (11)0.32371 (6)0.0216 (2)
H170.45960.72930.27790.026*
C130.33112 (15)0.71201 (11)0.55014 (6)0.0211 (2)
H130.31380.62050.55720.025*
C110.23959 (15)0.40809 (11)−0.00530 (6)0.0219 (2)
H110.21560.32300.02130.026*
C120.26613 (15)0.42703 (10)−0.08878 (6)0.0206 (2)
H120.26290.3558−0.11910.025*
C80.29763 (14)0.55274 (10)−0.12722 (6)0.0188 (2)
C90.30255 (15)0.65446 (10)−0.08099 (6)0.0203 (2)
H90.32240.7413−0.10590.024*
C100.27795 (15)0.62679 (10)0.00226 (6)0.0205 (2)
H100.28350.69570.03400.025*
C70.32694 (15)0.57964 (11)−0.21668 (6)0.0214 (2)
H7A0.35290.6659−0.24050.026*
C230.48373 (15)0.95840 (10)0.11436 (6)0.0198 (2)
C240.52458 (16)1.02301 (11)0.03024 (6)0.0228 (2)
H240.58851.10030.02010.027*
C220.15105 (15)0.34887 (10)0.22167 (6)0.0192 (2)
C210.13369 (15)0.31551 (10)0.31054 (6)0.0202 (2)
H210.07090.24070.33470.024*
C200.20063 (15)0.38402 (10)0.35802 (6)0.0200 (2)
H200.26330.45900.33400.024*
C190.18294 (15)0.35002 (10)0.44683 (6)0.0193 (2)
H70.231 (3)0.471 (2)0.1308 (12)0.077 (6)*
U11U22U33U12U13U23
O10.0306 (4)0.0372 (5)0.0216 (4)−0.0025 (3)−0.0053 (3)−0.0080 (3)
O30.0327 (4)0.0302 (4)0.0173 (4)−0.0076 (3)−0.0034 (3)−0.0010 (3)
O20.0369 (5)0.0287 (4)0.0214 (4)−0.0058 (3)−0.0054 (3)−0.0065 (3)
O80.0331 (4)0.0260 (4)0.0196 (4)−0.0131 (3)−0.0037 (3)0.0027 (3)
O90.0328 (4)0.0262 (4)0.0154 (4)−0.0109 (3)−0.0047 (3)0.0004 (3)
O60.0345 (4)0.0251 (4)0.0205 (4)−0.0114 (3)−0.0067 (3)−0.0005 (3)
O70.0316 (4)0.0245 (4)0.0168 (4)−0.0131 (3)−0.0033 (3)0.0033 (3)
O50.0333 (4)0.0244 (4)0.0171 (4)−0.0126 (3)−0.0042 (3)0.0029 (3)
O40.0322 (4)0.0261 (4)0.0211 (4)−0.0108 (3)−0.0063 (3)−0.0016 (3)
N10.0189 (4)0.0237 (5)0.0186 (4)−0.0052 (3)−0.0027 (3)0.0017 (3)
N30.0197 (4)0.0228 (4)0.0178 (4)−0.0044 (3)−0.0031 (3)−0.0001 (3)
N20.0187 (4)0.0232 (5)0.0188 (4)−0.0047 (3)−0.0024 (3)0.0009 (3)
C40.0221 (5)0.0190 (5)0.0273 (5)−0.0056 (4)−0.0058 (4)0.0024 (4)
C30.0231 (5)0.0199 (5)0.0237 (5)−0.0049 (4)−0.0055 (4)−0.0036 (4)
C20.0161 (5)0.0222 (5)0.0191 (5)−0.0041 (4)−0.0022 (4)−0.0017 (4)
C60.0209 (5)0.0185 (5)0.0214 (5)−0.0056 (4)−0.0022 (4)0.0002 (4)
C50.0216 (5)0.0220 (5)0.0191 (5)−0.0052 (4)−0.0019 (4)−0.0035 (4)
C10.0215 (5)0.0268 (5)0.0196 (5)−0.0030 (4)−0.0021 (4)−0.0006 (4)
C160.0233 (5)0.0190 (5)0.0222 (5)−0.0054 (4)−0.0039 (4)−0.0011 (4)
C150.0217 (5)0.0215 (5)0.0198 (5)−0.0052 (4)−0.0031 (4)−0.0041 (4)
C140.0161 (5)0.0222 (5)0.0175 (5)−0.0056 (4)−0.0029 (4)−0.0006 (4)
C180.0218 (5)0.0194 (5)0.0214 (5)−0.0047 (4)−0.0040 (4)−0.0030 (4)
C170.0219 (5)0.0241 (5)0.0197 (5)−0.0041 (4)−0.0033 (4)−0.0050 (4)
C130.0205 (5)0.0226 (5)0.0202 (5)−0.0060 (4)−0.0033 (4)0.0005 (4)
C110.0210 (5)0.0201 (5)0.0252 (5)−0.0062 (4)−0.0054 (4)0.0023 (4)
C120.0214 (5)0.0194 (5)0.0227 (5)−0.0052 (4)−0.0058 (4)−0.0022 (4)
C80.0161 (5)0.0221 (5)0.0182 (5)−0.0032 (4)−0.0032 (4)−0.0017 (4)
C90.0216 (5)0.0184 (5)0.0208 (5)−0.0048 (4)−0.0035 (4)−0.0002 (4)
C100.0213 (5)0.0209 (5)0.0192 (5)−0.0038 (4)−0.0027 (4)−0.0028 (4)
C70.0226 (5)0.0226 (5)0.0188 (5)−0.0040 (4)−0.0038 (4)−0.0008 (4)
C230.0186 (5)0.0229 (5)0.0174 (5)−0.0036 (4)−0.0029 (4)−0.0002 (4)
C240.0281 (5)0.0230 (5)0.0185 (5)−0.0109 (4)−0.0035 (4)0.0022 (4)
C220.0185 (5)0.0200 (5)0.0179 (5)−0.0036 (4)−0.0019 (4)0.0008 (4)
C210.0211 (5)0.0207 (5)0.0180 (5)−0.0060 (4)−0.0019 (4)0.0024 (4)
C200.0210 (5)0.0194 (5)0.0188 (5)−0.0058 (4)−0.0018 (4)0.0022 (4)
C190.0183 (5)0.0200 (5)0.0188 (5)−0.0039 (4)−0.0022 (4)0.0006 (4)
O1—C11.2089 (14)C16—C151.3810 (14)
O3—C131.2109 (13)C16—H160.9500
O2—C71.2089 (13)C15—C141.3917 (15)
O8—C231.2155 (13)C15—H150.9500
O9—C231.3175 (13)C14—C181.3909 (14)
O9—H9A1.030 (19)C14—C131.4898 (14)
O6—C221.2199 (13)C18—C171.3890 (14)
O7—C221.3119 (12)C18—H180.9500
O7—H71.050 (19)C17—H170.9500
O5—C191.3171 (12)C13—H130.9500
O5—H51.03 (2)C11—C121.3866 (15)
O4—C191.2191 (13)C11—H110.9500
N1—C51.3388 (14)C12—C81.3921 (14)
N1—C41.3415 (14)C12—H120.9500
N3—C171.3408 (14)C8—C91.3897 (14)
N3—C161.3418 (13)C8—C71.4892 (14)
N2—C101.3403 (14)C9—C101.3888 (14)
N2—C111.3419 (14)C9—H90.9500
C4—C31.3846 (15)C10—H100.9500
C4—H40.9500C7—H7A0.9500
C3—C21.3928 (14)C23—C241.4888 (14)
C3—H30.9500C24—C24i1.309 (2)
C2—C61.3896 (14)C24—H240.9500
C2—C11.4890 (14)C22—C211.4900 (14)
C6—C51.3856 (14)C21—C201.3280 (15)
C6—H60.9500C21—H210.9500
C5—H5A0.9500C20—C191.4897 (14)
C1—H10.9500C20—H200.9500
C23—O9—H9A108.3 (10)O3—C13—C14122.26 (10)
C22—O7—H7107.3 (11)O3—C13—H13118.9
C19—O5—H5109.4 (11)C14—C13—H13118.9
C5—N1—C4118.60 (9)N2—C11—C12122.25 (9)
C17—N3—C16118.84 (9)N2—C11—H11118.9
C10—N2—C11119.23 (9)C12—C11—H11118.9
N1—C4—C3122.46 (10)C11—C12—C8118.55 (9)
N1—C4—H4118.8C11—C12—H12120.7
C3—C4—H4118.8C8—C12—H12120.7
C4—C3—C2118.67 (10)C9—C8—C12119.17 (9)
C4—C3—H3120.7C9—C8—C7119.64 (9)
C2—C3—H3120.7C12—C8—C7121.19 (9)
C6—C2—C3119.03 (9)C10—C9—C8118.76 (9)
C6—C2—C1119.58 (9)C10—C9—H9120.6
C3—C2—C1121.37 (9)C8—C9—H9120.6
C5—C6—C2118.45 (9)N2—C10—C9122.02 (9)
C5—C6—H6120.8N2—C10—H10119.0
C2—C6—H6120.8C9—C10—H10119.0
N1—C5—C6122.79 (9)O2—C7—C8123.27 (10)
N1—C5—H5A118.6O2—C7—H7A118.4
C6—C5—H5A118.6C8—C7—H7A118.4
O1—C1—C2123.58 (10)O8—C23—O9124.76 (9)
O1—C1—H1118.2O8—C23—C24122.67 (9)
C2—C1—H1118.2O9—C23—C24112.57 (9)
N3—C16—C15122.25 (10)C24i—C24—C23122.28 (12)
N3—C16—H16118.9C24i—C24—H24118.9
C15—C16—H16118.9C23—C24—H24118.9
C16—C15—C14119.04 (9)O6—C22—O7124.52 (9)
C16—C15—H15120.5O6—C22—C21120.91 (9)
C14—C15—H15120.5O7—C22—C21114.57 (9)
C15—C14—C18118.86 (9)C20—C21—C22123.99 (9)
C15—C14—C13120.32 (9)C20—C21—H21118.0
C18—C14—C13120.81 (9)C22—C21—H21118.0
C17—C18—C14118.51 (10)C21—C20—C19123.71 (9)
C17—C18—H18120.7C21—C20—H20118.1
C14—C18—H18120.7C19—C20—H20118.1
N3—C17—C18122.46 (9)O4—C19—O5124.32 (9)
N3—C17—H17118.8O4—C19—C20121.40 (9)
C18—C17—H17118.8O5—C19—C20114.27 (9)
D—H···AD—HH···AD···AD—H···A
O9—H9A···N31.030 (19)1.576 (19)2.6047 (12)176.1 (17)
O5—H5···N11.03 (2)1.57 (2)2.5952 (12)172.0 (18)
O7—H7···N21.050 (19)1.54 (2)2.5826 (12)172.9 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O9—H9A⋯N31.030 (19)1.576 (19)2.6047 (12)176.1 (17)
O5—H5⋯N11.03 (2)1.57 (2)2.5952 (12)172.0 (18)
O7—H7⋯N21.050 (19)1.54 (2)2.5826 (12)172.9 (18)
  3 in total

1.  Salts of maleic and fumaric acids with organic polyamines: comparison of isomeric acids as building blocks in supramolecular chemistry.

Authors:  Katharine F Bowes; George Ferguson; Alan J Lough; Christopher Glidewell
Journal:  Acta Crystallogr B       Date:  2003-01-28

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  A high-yielding supramolecular reaction.

Authors:  Christer B Aakeröy; Alicia M Beatty; Brian A Helfrich
Journal:  J Am Chem Soc       Date:  2002-12-04       Impact factor: 15.419

  3 in total

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