Literature DB >> 23795101

tert-Butyl N-[(3R,4R)-1-(2-cyano-acet-yl)-4-methyl-piperidin-3-yl]-N-methyl-carbamate.

Matthias Gehringer1, Michael Forster, Dieter Schollmeyer, Stefan Laufer.   

Abstract

The piperidine ring of the title compound, C15H25N3O3, adopts a slightly distorted chair conformation with the cis substituents displaying an N-C-C-C torsion angle of 43.0 (3)°. The cyano group (plane defined by C-C-C N atoms) is bent slightly out of the plane of the amide group by 13.3 (2)°. The carbamate group is oriented at a dihedral angle of 60.3 (5)° relative to the amide group.

Entities:  

Year:  2013        PMID: 23795101      PMCID: PMC3685082          DOI: 10.1107/S1600536813013512

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity and structure–activity relationships of Tofacitinib {systematic name: 3-[(3R,4R)-4-methyl-3-[meth­yl(7H-pyrrolo­[2,3-d]pyrimidin-4-yl)amino]­pip­eridin-1-yl]-3-oxo­propane­nitrile} derivatives, see: Changelian et al. (2003 ▶); Flanagan et al. (2010 ▶); Zerbini & Lomonte (2012 ▶). For details of the synthesis, see: Babu et al. (2010 ▶).

Experimental

Crystal data

C15H25N3O3 M = 295.38 Monoclinic, a = 7.1786 (11) Å b = 7.3213 (10) Å c = 16.042 (2) Å β = 102.196 (4)° V = 824.1 (2) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 173 K 0.60 × 0.35 × 0.10 mm

Data collection

Bruker SMART APEXII diffractometer 5061 measured reflections 2115 independent reflections 1818 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.101 S = 1.03 2115 reflections 195 parameters 1 restraint H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813013512/nc2311sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813013512/nc2311Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813013512/nc2311Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H25N3O3F(000) = 320
Mr = 295.38Dx = 1.190 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1671 reflections
a = 7.1786 (11) Åθ = 2.6–27.7°
b = 7.3213 (10) ŵ = 0.08 mm1
c = 16.042 (2) ÅT = 173 K
β = 102.196 (4)°Block, colourless
V = 824.1 (2) Å30.60 × 0.35 × 0.10 mm
Z = 2
Bruker SMART APEXII diffractometer1818 reflections with I > 2σ(I)
Radiation source: sealed TubeRint = 0.031
Graphite monochromatorθmax = 27.8°, θmin = 2.6°
CCD scanh = −8→9
5061 measured reflectionsk = −9→9
2115 independent reflectionsl = −19→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0542P)2 + 0.0849P] where P = (Fo2 + 2Fc2)/3
2115 reflections(Δ/σ)max = 0.001
195 parametersΔρmax = 0.24 e Å3
1 restraintΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4456 (3)0.3404 (3)0.18701 (13)0.0302 (4)
H10.47160.21100.17310.036*
C20.6397 (3)0.4395 (4)0.20174 (18)0.0405 (6)
H20.70500.39450.15640.049*
C30.6252 (3)0.6475 (3)0.19155 (17)0.0399 (6)
H3A0.58130.70080.24080.048*
H3B0.75280.69830.19110.048*
C40.4877 (3)0.7001 (3)0.10969 (16)0.0395 (5)
H4A0.47370.83460.10660.047*
H4B0.53870.65920.06010.047*
N50.3008 (3)0.6153 (3)0.10671 (12)0.0312 (4)
C60.3066 (3)0.4151 (3)0.10847 (14)0.0330 (5)
H6A0.34490.37020.05630.040*
H6B0.17720.36770.10810.040*
N70.3602 (2)0.3322 (2)0.26269 (11)0.0285 (4)
C80.2959 (4)0.4987 (3)0.29674 (17)0.0402 (6)
H8A0.39260.59410.29890.060*
H8B0.27570.47570.35440.060*
H8C0.17600.53880.25990.060*
C90.3408 (3)0.1672 (3)0.29731 (13)0.0290 (4)
O100.3892 (2)0.0216 (2)0.27102 (10)0.0394 (4)
O110.2571 (2)0.1828 (2)0.36532 (10)0.0372 (4)
C120.2052 (3)0.0207 (3)0.40890 (14)0.0375 (5)
C130.3833 (4)−0.0846 (4)0.45076 (17)0.0512 (7)
H13A0.4434−0.13620.40660.077*
H13B0.3482−0.18360.48560.077*
H13C0.4728−0.00190.48700.077*
C140.0646 (4)−0.0948 (4)0.34738 (17)0.0433 (6)
H14A0.1261−0.14240.30280.065*
H14B−0.0455−0.02000.32120.065*
H14C0.0221−0.19700.37820.065*
C150.1100 (5)0.1057 (4)0.47614 (17)0.0496 (7)
H15A0.20070.18640.51300.074*
H15B0.06970.00880.51060.074*
H15C−0.00140.17650.44800.074*
C160.7654 (4)0.3823 (5)0.2870 (2)0.0702 (10)
H16A0.89330.43370.29190.105*
H16B0.77360.24870.28980.105*
H16C0.70990.42770.33380.105*
C170.1318 (3)0.7016 (3)0.09444 (12)0.0283 (4)
O18−0.0215 (2)0.6227 (2)0.08811 (11)0.0374 (4)
C190.1360 (3)0.9103 (3)0.09008 (14)0.0340 (5)
H19A0.23740.95730.13690.041*
H19B0.16690.94820.03530.041*
C20−0.0465 (4)0.9893 (3)0.09718 (15)0.0372 (5)
N21−0.1875 (3)1.0566 (3)0.10290 (15)0.0513 (6)
U11U22U33U12U13U23
C10.0333 (10)0.0234 (10)0.0361 (11)0.0038 (9)0.0125 (8)−0.0038 (9)
C20.0278 (11)0.0393 (14)0.0574 (15)0.0051 (10)0.0160 (10)−0.0009 (12)
C30.0269 (10)0.0385 (14)0.0575 (15)−0.0046 (10)0.0159 (10)−0.0048 (11)
C40.0391 (11)0.0325 (12)0.0511 (14)−0.0060 (10)0.0187 (10)0.0034 (11)
N50.0344 (9)0.0239 (9)0.0359 (10)−0.0030 (8)0.0091 (7)0.0008 (8)
C60.0429 (12)0.0234 (10)0.0331 (11)−0.0014 (9)0.0090 (9)−0.0037 (9)
N70.0327 (8)0.0233 (9)0.0310 (9)0.0052 (8)0.0099 (7)−0.0018 (8)
C80.0558 (14)0.0215 (11)0.0508 (14)0.0034 (10)0.0282 (11)−0.0025 (10)
C90.0314 (9)0.0258 (10)0.0289 (10)0.0031 (9)0.0038 (8)−0.0018 (9)
O100.0546 (10)0.0241 (8)0.0414 (9)0.0088 (8)0.0147 (7)−0.0021 (7)
O110.0570 (9)0.0218 (7)0.0366 (8)0.0036 (8)0.0187 (7)0.0002 (7)
C120.0557 (13)0.0239 (11)0.0341 (12)0.0063 (11)0.0124 (10)0.0032 (10)
C130.0667 (17)0.0402 (13)0.0417 (14)0.0094 (13)0.0000 (12)0.0058 (12)
C140.0537 (14)0.0294 (11)0.0482 (14)−0.0010 (11)0.0138 (11)−0.0000 (11)
C150.0788 (18)0.0346 (12)0.0431 (14)0.0021 (13)0.0300 (13)0.0024 (11)
C160.0317 (12)0.070 (2)0.099 (3)0.0032 (14)−0.0084 (14)0.015 (2)
C170.0360 (10)0.0258 (10)0.0230 (10)−0.0026 (9)0.0059 (8)−0.0023 (8)
O180.0355 (8)0.0322 (8)0.0445 (9)−0.0042 (7)0.0085 (7)−0.0065 (7)
C190.0398 (12)0.0286 (11)0.0321 (11)−0.0018 (10)0.0044 (9)0.0035 (9)
C200.0506 (14)0.0270 (11)0.0325 (11)0.0005 (11)0.0058 (10)−0.0004 (9)
N210.0589 (13)0.0413 (13)0.0545 (13)0.0095 (12)0.0139 (11)−0.0015 (11)
C1—N71.472 (3)C9—O111.357 (3)
C1—C61.533 (3)O11—C121.465 (3)
C1—C21.544 (3)C12—C141.512 (4)
C1—H11.0000C12—C131.522 (3)
C2—C161.529 (4)C12—C151.526 (3)
C2—C31.533 (4)C13—H13A0.9800
C2—H21.0000C13—H13B0.9800
C3—C41.516 (4)C13—H13C0.9800
C3—H3A0.9900C14—H14A0.9800
C3—H3B0.9900C14—H14B0.9800
C4—N51.470 (3)C14—H14C0.9800
C4—H4A0.9900C15—H15A0.9800
C4—H4B0.9900C15—H15B0.9800
N5—C171.345 (3)C15—H15C0.9800
N5—C61.467 (3)C16—H16A0.9800
C6—H6A0.9900C16—H16B0.9800
C6—H6B0.9900C16—H16C0.9800
N7—C91.349 (3)C17—O181.228 (3)
N7—C81.451 (3)C17—C191.530 (3)
C8—H8A0.9800C19—C201.459 (3)
C8—H8B0.9800C19—H19A0.9900
C8—H8C0.9800C19—H19B0.9900
C9—O101.223 (3)C20—N211.147 (3)
N7—C1—C6112.35 (17)O10—C9—O11123.9 (2)
N7—C1—C2114.38 (18)N7—C9—O11110.90 (18)
C6—C1—C2111.59 (19)C9—O11—C12121.04 (17)
N7—C1—H1105.9O11—C12—C14110.10 (18)
C6—C1—H1105.9O11—C12—C13110.3 (2)
C2—C1—H1105.9C14—C12—C13112.8 (2)
C16—C2—C3112.4 (2)O11—C12—C15101.76 (19)
C16—C2—C1110.6 (2)C14—C12—C15110.7 (2)
C3—C2—C1114.31 (19)C13—C12—C15110.8 (2)
C16—C2—H2106.3C12—C13—H13A109.5
C3—C2—H2106.3C12—C13—H13B109.5
C1—C2—H2106.3H13A—C13—H13B109.5
C4—C3—C2111.2 (2)C12—C13—H13C109.5
C4—C3—H3A109.4H13A—C13—H13C109.5
C2—C3—H3A109.4H13B—C13—H13C109.5
C4—C3—H3B109.4C12—C14—H14A109.5
C2—C3—H3B109.4C12—C14—H14B109.5
H3A—C3—H3B108.0H14A—C14—H14B109.5
N5—C4—C3110.11 (18)C12—C14—H14C109.5
N5—C4—H4A109.6H14A—C14—H14C109.5
C3—C4—H4A109.6H14B—C14—H14C109.5
N5—C4—H4B109.6C12—C15—H15A109.5
C3—C4—H4B109.6C12—C15—H15B109.5
H4A—C4—H4B108.2H15A—C15—H15B109.5
C17—N5—C6119.57 (19)C12—C15—H15C109.5
C17—N5—C4126.53 (19)H15A—C15—H15C109.5
C6—N5—C4113.55 (19)H15B—C15—H15C109.5
N5—C6—C1112.52 (19)C2—C16—H16A109.5
N5—C6—H6A109.1C2—C16—H16B109.5
C1—C6—H6A109.1H16A—C16—H16B109.5
N5—C6—H6B109.1C2—C16—H16C109.5
C1—C6—H6B109.1H16A—C16—H16C109.5
H6A—C6—H6B107.8H16B—C16—H16C109.5
C9—N7—C8121.94 (17)O18—C17—N5123.7 (2)
C9—N7—C1118.25 (17)O18—C17—C19119.5 (2)
C8—N7—C1119.80 (18)N5—C17—C19116.7 (2)
N7—C8—H8A109.5C20—C19—C17111.4 (2)
N7—C8—H8B109.5C20—C19—H19A109.3
H8A—C8—H8B109.5C17—C19—H19A109.3
N7—C8—H8C109.5C20—C19—H19B109.3
H8A—C8—H8C109.5C17—C19—H19B109.3
H8B—C8—H8C109.5H19A—C19—H19B108.0
O10—C9—N7125.24 (18)N21—C20—C19177.9 (3)
N7—C1—C2—C1643.0 (3)C2—C1—N7—C867.0 (3)
C6—C1—C2—C16171.9 (2)C8—N7—C9—O10178.8 (2)
N7—C1—C2—C3−85.0 (3)C1—N7—C9—O100.2 (3)
C6—C1—C2—C343.9 (3)C8—N7—C9—O11−0.3 (3)
C16—C2—C3—C4−175.6 (2)C1—N7—C9—O11−178.92 (17)
C1—C2—C3—C4−48.5 (3)O10—C9—O11—C12−4.7 (3)
C2—C3—C4—N555.2 (3)N7—C9—O11—C12174.44 (18)
C3—C4—N5—C17126.0 (2)C9—O11—C12—C14−60.1 (3)
C3—C4—N5—C6−60.9 (3)C9—O11—C12—C1365.0 (3)
C17—N5—C6—C1−129.3 (2)C9—O11—C12—C15−177.46 (19)
C4—N5—C6—C157.1 (3)C6—N5—C17—O183.4 (3)
N7—C1—C6—N583.0 (2)C4—N5—C17—O18176.1 (2)
C2—C1—C6—N5−47.0 (3)C6—N5—C17—C19−177.8 (2)
C6—C1—N7—C9117.2 (2)C4—N5—C17—C19−5.1 (3)
C2—C1—N7—C9−114.3 (2)O18—C17—C19—C2012.5 (3)
C6—C1—N7—C8−61.5 (3)N5—C17—C19—C20−166.36 (18)
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