Literature DB >> 23795087

2-Acetyl-amino-1,3,4,6-tetra-O-(tri-methyl-silyl)-2-de-oxy-α-d-gluco-pyran-ose.

Zhao-Dong Cheng1, Yan-Li Cui, Jian-Wei Mao.   

Abstract

The title compound, C20H47NO6Si4, was synthesized by per-O-tri-methyl-silylation of N-acetyl-d-glucosa-mine using chloro-tri-methyl-silane in the presence of hexa-methyl-disiloxane. The tri-methyl-silyl group and acetamido group are located on the same side of the pyran ring, showing an α-configuration glycoside. One of the tri-methyl-silyl groups is disordered over two orientations, with site-occupancy factors of 0.625 (9) and 0.375 (9). In the crystal, N-H⋯O hydrogen bonds link the mol-ecules into supra-molecular chains along the a-axis direction.

Entities:  

Year:  2013        PMID: 23795087      PMCID: PMC3685068          DOI: 10.1107/S160053681301266X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the title compound, see: Augé et al. (1985 ▶); Ronnow et al. (1994 ▶); Du & Gervais-Hague (2005 ▶); Wang et al. (2007 ▶); Witschi & Gervais-Hague (2010 ▶). For related structures, see: Odinokov et al. (2002 ▶); Hu et al. (2011 ▶). For the synthesis, see: Loganathan & Trivedi (1987 ▶); Jervis et al. (2010 ▶).

Experimental

Crystal data

C20H47NO6Si4 M = 509.95 Orthorhombic, a = 9.4500 (7) Å b = 12.8824 (9) Å c = 27.295 (3) Å V = 3322.9 (5) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 293 K 0.38 × 0.20 × 0.19 mm

Data collection

Agilent Xcalibur (Atlas, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.926, T max = 0.962 9896 measured reflections 3438 independent reflections 2105 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.149 S = 1.01 3438 reflections 309 parameters 183 restraints H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681301266X/zq2199sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301266X/zq2199Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H47NO6Si4F(000) = 1112
Mr = 509.95Dx = 1.019 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1672 reflections
a = 9.4500 (7) Åθ = 3.2–29.6°
b = 12.8824 (9) ŵ = 0.21 mm1
c = 27.295 (3) ÅT = 293 K
V = 3322.9 (5) Å3Needle, colourless
Z = 40.38 × 0.20 × 0.19 mm
Agilent Xcalibur (Atlas, Gemini ultra) diffractometer3438 independent reflections
Radiation source: fine-focus sealed tube2105 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.046
Detector resolution: 10.3592 pixels mm-1θmax = 25.4°, θmin = 3.2°
ω scansh = −11→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −12→15
Tmin = 0.926, Tmax = 0.962l = −30→32
9896 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0744P)2 + 0.3973P] where P = (Fo2 + 2Fc2)/3
3438 reflections(Δ/σ)max < 0.001
309 parametersΔρmax = 0.26 e Å3
183 restraintsΔρmin = −0.22 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Si11.01789 (16)0.89841 (11)0.87673 (6)0.0716 (4)
Si21.03616 (19)0.43173 (13)0.99519 (7)0.0911 (6)
Si30.9320 (2)0.31145 (12)0.84396 (7)0.0842 (5)
Si40.5209 (19)0.5532 (8)0.7757 (5)0.1318 (13)0.625 (9)
O10.7944 (3)0.6870 (3)0.85017 (13)0.0726 (9)
O20.9849 (3)0.7739 (2)0.88456 (12)0.0662 (9)
O30.7055 (3)0.7511 (5)1.00819 (18)0.1157 (16)
O40.9211 (3)0.4785 (3)0.95578 (13)0.0731 (10)
O50.9704 (4)0.4351 (3)0.85373 (13)0.0751 (9)
O60.6763 (5)0.5183 (4)0.79227 (17)0.1117 (16)
N10.9130 (3)0.7012 (3)0.97859 (14)0.0604 (11)
H11.00300.69910.98310.072*
C10.8492 (5)0.7328 (4)0.8930 (2)0.0646 (13)
H1A0.78630.78950.90290.077*
C20.8562 (4)0.6535 (4)0.93482 (18)0.0581 (12)
H20.75900.63200.94210.070*
C30.9380 (4)0.5563 (4)0.91906 (17)0.0593 (12)
H31.03860.57330.91560.071*
C40.8818 (5)0.5161 (4)0.87110 (18)0.0612 (12)
H40.78630.48860.87620.073*
C50.8759 (5)0.6012 (4)0.83238 (19)0.0690 (14)
H50.97230.62500.82530.083*
C61.0050 (8)0.9663 (5)0.9361 (2)0.113 (2)
H6A0.91090.95910.94890.170*
H6B1.02621.03860.93160.170*
H6C1.07140.93660.95880.170*
C71.1984 (6)0.9046 (5)0.8523 (2)0.0970 (19)
H7A1.26480.89070.87810.146*
H7B1.21560.97260.83920.146*
H7C1.20930.85380.82690.146*
C80.8876 (7)0.9521 (5)0.8333 (3)0.113 (2)
H8A0.86820.90190.80820.169*
H8B0.92511.01400.81860.169*
H8C0.80170.96840.85040.169*
C90.8345 (5)0.7478 (5)1.0119 (2)0.0715 (15)
C100.9086 (6)0.7965 (5)1.0546 (2)0.0879 (17)
H10A0.95050.86101.04460.132*
H10B0.98120.75051.06620.132*
H10C0.84170.80921.08040.132*
C111.0461 (9)0.5095 (7)1.0526 (2)0.140 (3)
H11A1.08000.57801.04520.209*
H11B1.10970.47651.07520.209*
H11C0.95370.51411.06710.209*
C121.2153 (7)0.4319 (6)0.9680 (3)0.129 (3)
H12A1.21130.40300.93560.194*
H12B1.27760.39090.98800.194*
H12C1.25000.50180.96630.194*
C130.9806 (11)0.2963 (6)1.0071 (4)0.163 (4)
H13A0.89200.29631.02430.245*
H13B1.05110.26211.02660.245*
H13C0.96980.26030.97650.245*
C141.0962 (9)0.2396 (5)0.8588 (3)0.132 (3)
H14A1.17550.27330.84360.198*
H14B1.08880.16970.84680.198*
H14C1.10940.23840.89370.198*
C150.7800 (8)0.2703 (6)0.8809 (3)0.124 (3)
H15A0.79230.29350.91400.185*
H15B0.77320.19590.88030.185*
H15C0.69500.29980.86760.185*
C160.8882 (11)0.2878 (5)0.7775 (3)0.140 (3)
H16A0.80260.32390.76920.210*
H16B0.87540.21470.77210.210*
H16C0.96420.31260.75730.210*
C170.8067 (7)0.5670 (5)0.7852 (2)0.0922 (18)
H17A0.79330.62710.76430.111*
H17B0.86970.51950.76830.111*
C18A0.4994 (16)0.7084 (13)0.7939 (6)0.161 (3)0.625 (9)
H18A0.54110.72120.82540.242*0.625 (9)
H18B0.40130.72760.79460.242*0.625 (9)
H18C0.54760.74880.76950.242*0.625 (9)
C190.5118 (19)0.5859 (15)0.7098 (5)0.151 (3)0.625 (9)
H19A0.57190.64430.70320.226*0.625 (9)
H19B0.41610.60280.70120.226*0.625 (9)
H19C0.54280.52750.69080.226*0.625 (9)
C20A0.3849 (15)0.4802 (14)0.8078 (6)0.170 (3)0.625 (9)
H20A0.38100.41620.78980.255*0.625 (9)
H20B0.29320.51240.80760.255*0.625 (9)
H20C0.41280.46650.84100.255*0.625 (9)
Si4A0.515 (3)0.5685 (12)0.7787 (8)0.1318 (13)0.375 (9)
C180.445 (3)0.639 (2)0.8231 (9)0.161 (3)0.375 (9)
H18D0.46510.61100.85500.242*0.375 (9)
H18E0.34480.64410.81860.242*0.375 (9)
H18F0.48680.70690.82040.242*0.375 (9)
C200.432 (3)0.4260 (15)0.7663 (10)0.170 (3)0.375 (9)
H20D0.49110.38230.74650.255*0.375 (9)
H20E0.34310.43660.75020.255*0.375 (9)
H20F0.41640.39340.79750.255*0.375 (9)
C19A0.480 (3)0.526 (3)0.7151 (9)0.151 (3)0.375 (9)
H19D0.51970.57500.69260.226*0.375 (9)
H19E0.37950.52150.71000.226*0.375 (9)
H19F0.52170.45890.70980.226*0.375 (9)
U11U22U33U12U13U23
Si10.0804 (9)0.0542 (8)0.0802 (9)−0.0045 (7)0.0034 (8)0.0013 (8)
Si20.1054 (12)0.0709 (10)0.0970 (12)0.0005 (9)−0.0386 (10)0.0153 (9)
Si30.1152 (12)0.0534 (8)0.0839 (10)−0.0089 (9)−0.0044 (10)−0.0025 (8)
Si40.1162 (18)0.180 (3)0.0987 (19)0.026 (3)−0.0233 (15)−0.043 (2)
O10.078 (2)0.058 (2)0.082 (2)0.0030 (19)−0.0269 (19)0.001 (2)
O20.0583 (17)0.0556 (19)0.085 (2)−0.0022 (15)−0.0030 (16)−0.0010 (17)
O30.0407 (19)0.177 (4)0.129 (4)0.011 (2)0.009 (2)−0.036 (3)
O40.0725 (19)0.068 (2)0.079 (2)−0.0113 (19)−0.0134 (18)0.0178 (19)
O50.087 (2)0.0523 (18)0.086 (2)0.0013 (19)−0.0010 (19)0.0020 (18)
O60.130 (3)0.094 (3)0.111 (3)−0.025 (3)−0.054 (3)0.004 (3)
N10.0321 (15)0.079 (3)0.070 (3)0.0023 (19)0.0012 (18)−0.009 (2)
C10.054 (3)0.059 (3)0.080 (4)0.006 (2)−0.008 (2)−0.004 (3)
C20.038 (2)0.069 (3)0.067 (3)−0.001 (2)−0.005 (2)0.000 (3)
C30.048 (2)0.058 (3)0.072 (3)−0.005 (2)−0.005 (2)0.010 (3)
C40.064 (3)0.052 (3)0.067 (3)−0.008 (2)−0.009 (2)0.000 (3)
C50.076 (3)0.057 (3)0.074 (3)−0.001 (3)−0.008 (3)0.000 (3)
C60.158 (6)0.078 (4)0.104 (5)−0.008 (4)0.023 (5)−0.022 (4)
C70.100 (4)0.096 (5)0.095 (4)−0.015 (4)−0.003 (4)0.010 (4)
C80.112 (5)0.074 (4)0.153 (7)0.011 (4)−0.012 (4)0.027 (5)
C90.047 (3)0.088 (4)0.080 (4)0.002 (3)0.005 (3)0.004 (3)
C100.073 (3)0.116 (5)0.074 (4)0.005 (4)0.008 (3)−0.014 (4)
C110.167 (7)0.158 (7)0.093 (5)0.037 (6)−0.053 (5)0.003 (5)
C120.099 (5)0.118 (6)0.172 (7)0.030 (5)−0.046 (5)0.004 (6)
C130.186 (8)0.117 (6)0.186 (9)−0.038 (6)−0.079 (7)0.073 (6)
C140.157 (6)0.056 (4)0.183 (9)0.009 (4)−0.006 (6)−0.007 (5)
C150.148 (6)0.089 (5)0.134 (6)−0.038 (5)0.013 (5)−0.015 (5)
C160.244 (10)0.087 (5)0.089 (5)−0.013 (6)−0.029 (6)−0.012 (4)
C170.128 (5)0.076 (4)0.072 (4)−0.005 (4)−0.026 (4)0.002 (3)
C18A0.143 (5)0.204 (7)0.137 (6)0.032 (5)−0.018 (5)−0.040 (5)
C190.128 (5)0.202 (7)0.122 (5)0.031 (6)−0.036 (4)−0.032 (6)
C20A0.145 (5)0.218 (7)0.148 (6)0.008 (6)−0.015 (5)−0.032 (6)
Si4A0.1162 (18)0.180 (3)0.0987 (19)0.026 (3)−0.0233 (15)−0.043 (2)
C180.143 (5)0.204 (7)0.137 (6)0.032 (5)−0.018 (5)−0.040 (5)
C200.145 (5)0.218 (7)0.148 (6)0.008 (6)−0.015 (5)−0.032 (6)
C19A0.128 (5)0.202 (7)0.122 (5)0.031 (6)−0.036 (4)−0.032 (6)
Si1—O21.649 (4)C9—C101.498 (8)
Si1—C71.833 (6)C10—H10A0.9600
Si1—C81.845 (7)C10—H10B0.9600
Si1—C61.847 (6)C10—H10C0.9600
Si2—O41.644 (4)C11—H11A0.9600
Si2—C121.848 (8)C11—H11B0.9600
Si2—C131.851 (8)C11—H11C0.9600
Si2—C111.863 (7)C12—H12A0.9600
Si3—O51.655 (4)C12—H12B0.9600
Si3—C151.833 (7)C12—H12C0.9600
Si3—C141.851 (8)C13—H13A0.9600
Si3—C161.886 (7)C13—H13B0.9600
Si4—O61.60 (2)C13—H13C0.9600
Si4—C181.846 (10)C14—H14A0.9600
Si4—C191.850 (9)C14—H14B0.9600
Si4—C201.858 (10)C14—H14C0.9600
O1—C11.408 (6)C15—H15A0.9600
O1—C51.432 (6)C15—H15B0.9600
O2—C11.406 (6)C15—H15C0.9600
O3—C91.224 (5)C16—H16A0.9600
O4—C31.427 (5)C16—H16B0.9600
O5—C41.419 (6)C16—H16C0.9600
O6—C171.396 (7)C17—H17A0.9700
O6—Si4A1.69 (3)C17—H17B0.9700
N1—C91.317 (6)C18A—Si4A1.856 (10)
N1—C21.447 (6)C18A—H18A0.9600
N1—H10.8600C18A—H18B0.9600
C1—C21.532 (7)C18A—H18C0.9600
C1—H1A0.9800C19—H19A0.9600
C2—C31.533 (6)C19—H19B0.9600
C2—H20.9800C19—H19C0.9600
C3—C41.505 (6)C20A—Si4A1.856 (10)
C3—H30.9800C20A—H20A0.9600
C4—C51.525 (7)C20A—H20B0.9600
C4—H40.9800C20A—H20C0.9600
C5—C171.511 (7)Si4A—C19A1.851 (10)
C5—H50.9800C18—H18D0.9600
C6—H6A0.9600C18—H18E0.9600
C6—H6B0.9600C18—H18F0.9600
C6—H6C0.9600C20—H20D0.9600
C7—H7A0.9600C20—H20E0.9600
C7—H7B0.9600C20—H20F0.9600
C7—H7C0.9600C19A—H19D0.9600
C8—H8A0.9600C19A—H19E0.9600
C8—H8B0.9600C19A—H19F0.9600
C8—H8C0.9600
O2—Si1—C7105.4 (3)Si1—C8—H8C109.5
O2—Si1—C8108.8 (3)H8A—C8—H8C109.5
C7—Si1—C8111.8 (3)H8B—C8—H8C109.5
O2—Si1—C6109.6 (3)O3—C9—N1121.3 (5)
C7—Si1—C6111.1 (3)O3—C9—C10121.0 (5)
C8—Si1—C6110.1 (4)N1—C9—C10117.7 (4)
O4—Si2—C12110.0 (3)C9—C10—H10A109.5
O4—Si2—C13105.8 (3)C9—C10—H10B109.5
C12—Si2—C13109.4 (4)H10A—C10—H10B109.5
O4—Si2—C11112.8 (3)C9—C10—H10C109.5
C12—Si2—C11106.9 (4)H10A—C10—H10C109.5
C13—Si2—C11111.9 (5)H10B—C10—H10C109.5
O5—Si3—C15111.2 (3)Si2—C11—H11A109.5
O5—Si3—C14105.2 (3)Si2—C11—H11B109.5
C15—Si3—C14113.1 (4)H11A—C11—H11B109.5
O5—Si3—C16111.0 (3)Si2—C11—H11C109.5
C15—Si3—C16108.0 (4)H11A—C11—H11C109.5
C14—Si3—C16108.3 (4)H11B—C11—H11C109.5
O6—Si4—C18109.0 (12)Si2—C12—H12A109.5
O6—Si4—C19112.4 (9)Si2—C12—H12B109.5
C18—Si4—C19121.8 (15)H12A—C12—H12B109.5
O6—Si4—C20101.9 (11)Si2—C12—H12C109.5
C18—Si4—C20116.8 (15)H12A—C12—H12C109.5
C19—Si4—C2092.6 (13)H12B—C12—H12C109.5
C1—O1—C5114.0 (3)Si2—C13—H13A109.5
C1—O2—Si1124.1 (3)Si2—C13—H13B109.5
C3—O4—Si2130.0 (3)H13A—C13—H13B109.5
C4—O5—Si3129.2 (3)Si2—C13—H13C109.5
C17—O6—Si4130.2 (5)H13A—C13—H13C109.5
C17—O6—Si4A126.2 (7)H13B—C13—H13C109.5
C9—N1—C2123.7 (4)Si3—C14—H14A109.5
C9—N1—H1118.2Si3—C14—H14B109.5
C2—N1—H1118.2H14A—C14—H14B109.5
O2—C1—O1110.9 (4)Si3—C14—H14C109.5
O2—C1—C2109.5 (3)H14A—C14—H14C109.5
O1—C1—C2110.8 (4)H14B—C14—H14C109.5
O2—C1—H1A108.5Si3—C15—H15A109.5
O1—C1—H1A108.5Si3—C15—H15B109.5
C2—C1—H1A108.5H15A—C15—H15B109.5
N1—C2—C1110.3 (4)Si3—C15—H15C109.5
N1—C2—C3113.1 (3)H15A—C15—H15C109.5
C1—C2—C3110.9 (4)H15B—C15—H15C109.5
N1—C2—H2107.4Si3—C16—H16A109.5
C1—C2—H2107.4Si3—C16—H16B109.5
C3—C2—H2107.4H16A—C16—H16B109.5
O4—C3—C4109.2 (4)Si3—C16—H16C109.5
O4—C3—C2108.7 (4)H16A—C16—H16C109.5
C4—C3—C2110.3 (4)H16B—C16—H16C109.5
O4—C3—H3109.5O6—C17—C5113.3 (5)
C4—C3—H3109.5O6—C17—H17A108.9
C2—C3—H3109.5C5—C17—H17A108.9
O5—C4—C3109.6 (4)O6—C17—H17B108.9
O5—C4—C5108.6 (4)C5—C17—H17B108.9
C3—C4—C5111.6 (4)H17A—C17—H17B107.7
O5—C4—H4109.0Si4A—C18A—H18A109.5
C3—C4—H4109.0Si4A—C18A—H18B109.5
C5—C4—H4109.0H18A—C18A—H18B109.5
O1—C5—C17106.4 (4)Si4A—C18A—H18C109.5
O1—C5—C4109.9 (4)H18A—C18A—H18C109.5
C17—C5—C4113.4 (4)H18B—C18A—H18C109.5
O1—C5—H5109.0Si4A—C20A—H20A109.5
C17—C5—H5109.0Si4A—C20A—H20B109.5
C4—C5—H5109.0H20A—C20A—H20B109.5
Si1—C6—H6A109.5Si4A—C20A—H20C109.5
Si1—C6—H6B109.5H20A—C20A—H20C109.5
H6A—C6—H6B109.5H20B—C20A—H20C109.5
Si1—C6—H6C109.5O6—Si4A—C19A104.8 (14)
H6A—C6—H6C109.5O6—Si4A—C18A113.3 (14)
H6B—C6—H6C109.5C19A—Si4A—C18A118.8 (17)
Si1—C7—H7A109.5O6—Si4A—C20A105.7 (12)
Si1—C7—H7B109.5C19A—Si4A—C20A95.6 (16)
H7A—C7—H7B109.5C18A—Si4A—C20A116.5 (14)
Si1—C7—H7C109.5Si4A—C19A—H19D109.5
H7A—C7—H7C109.5Si4A—C19A—H19E109.5
H7B—C7—H7C109.5H19D—C19A—H19E109.5
Si1—C8—H8A109.5Si4A—C19A—H19F109.5
Si1—C8—H8B109.5H19D—C19A—H19F109.5
H8A—C8—H8B109.5H19E—C19A—H19F109.5
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.862.032.855 (4)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O3i 0.862.032.855 (4)160

Symmetry code: (i) .

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