Literature DB >> 23795068

8,13,26-Trioxa-23-thia-21-aza-penta-cyclo-[18.6.0.0(2,7).0(14,19).0(21,25)]hexa-cosa-2(7),3,5,14,16,18-hexa-ene.

Seenivasan Karthiga Devi1, Thothadri Srinivasan, Santhanagopalan Purushothaman, Raghavachary Raghunathan, Devadasan Velmurugan.   

Abstract

In the title compound, C21H23NO3S, both the thia-zole and oxazolidine rings adopt twist conformations. The mean plane of the thia-zole ring makes a dihedral angle of 61.02 (7)° with the oxazolidine ring mean plane, and dihedral angles of 22.72 (6) and 75.07 (6)° with the benzene rings. The benzene rings are almost perpendicular to one another, making a dihedral angle of 89.14 (6)°. There are bifurcated intra-molecular C-H⋯O hydrogen bonds in the mol-ecular structure. In the crystal, mol-ecules are linked via C-H⋯π inter-actions, forming chains propagating along [100].

Entities:  

Year:  2013        PMID: 23795068      PMCID: PMC3685049          DOI: 10.1107/S1600536813012804

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thia­zole derivatives, see: Guo et al. (2006 ▶); Karegoudar et al. (2008 ▶); Reddy et al. (1999 ▶).

Experimental

Crystal data

C21H23NO3S M = 369.46 Monoclinic, a = 9.9858 (5) Å b = 17.8830 (8) Å c = 10.2054 (4) Å β = 94.663 (2)° V = 1816.41 (14) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.943, T max = 0.961 29183 measured reflections 7768 independent reflections 5150 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.152 S = 1.02 7768 reflections 235 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813012804/su2596sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813012804/su2596Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813012804/su2596Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H23NO3SF(000) = 784
Mr = 369.46Dx = 1.351 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7768 reflections
a = 9.9858 (5) Åθ = 2.1–34.8°
b = 17.8830 (8) ŵ = 0.20 mm1
c = 10.2054 (4) ÅT = 293 K
β = 94.663 (2)°Block, colourless
V = 1816.41 (14) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer7768 independent reflections
Radiation source: fine-focus sealed tube5150 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
ω and φ scansθmax = 34.8°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −13→15
Tmin = 0.943, Tmax = 0.961k = −28→28
29183 measured reflectionsl = −15→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0779P)2 + 0.2141P] where P = (Fo2 + 2Fc2)/3
7768 reflections(Δ/σ)max = 0.002
235 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.74184 (4)1.12013 (2)0.65807 (4)0.0494 (1)
O10.57658 (8)0.80765 (4)0.59355 (7)0.0381 (2)
O20.78980 (10)0.74731 (5)0.76920 (9)0.0485 (3)
O30.89870 (8)0.94723 (5)0.64326 (9)0.0436 (3)
N10.67629 (9)0.98089 (5)0.59254 (9)0.0340 (2)
C10.50176 (11)0.84125 (6)0.68238 (10)0.0325 (3)
C20.37387 (12)0.81698 (7)0.70780 (13)0.0429 (3)
C30.30109 (13)0.85474 (8)0.79647 (15)0.0506 (4)
C40.35388 (13)0.91678 (8)0.86141 (14)0.0500 (4)
C50.48200 (12)0.94056 (7)0.83674 (12)0.0398 (3)
C60.55823 (10)0.90457 (6)0.74765 (10)0.0305 (2)
C70.68950 (10)0.94036 (5)0.71960 (9)0.0289 (2)
C80.81406 (10)0.89322 (6)0.70168 (10)0.0322 (3)
C90.88694 (10)0.86250 (6)0.82490 (11)0.0337 (3)
C100.96886 (12)0.90696 (7)0.90900 (12)0.0431 (3)
C111.03721 (13)0.87723 (9)1.02151 (14)0.0512 (4)
C121.02422 (13)0.80285 (9)1.04927 (13)0.0512 (4)
C130.94301 (13)0.75665 (8)0.96711 (13)0.0465 (4)
C140.87363 (11)0.78676 (6)0.85559 (11)0.0372 (3)
C150.77313 (15)0.66932 (7)0.78900 (14)0.0506 (4)
C160.69047 (16)0.63866 (7)0.67137 (15)0.0525 (4)
C170.54971 (14)0.67230 (7)0.64497 (14)0.0476 (4)
C180.53496 (15)0.73498 (7)0.54430 (12)0.0475 (4)
C190.81413 (12)0.99003 (6)0.55430 (11)0.0385 (3)
C200.85491 (15)1.07215 (8)0.55857 (18)0.0572 (5)
C210.61277 (12)1.05348 (6)0.59768 (13)0.0427 (3)
H20.337100.775000.664700.0510*
H30.215700.838000.812400.0610*
H40.304800.942400.920700.0600*
H50.518100.982100.881600.0480*
H70.713000.977000.789200.0350*
H80.791500.852500.639500.0390*
H100.978300.957400.890000.0520*
H111.091300.907701.077400.0610*
H121.070300.782901.124100.0610*
H130.935100.706100.986500.0560*
H15A0.727900.660600.868200.0610*
H15B0.860000.644800.798600.0610*
H16A0.681400.585100.682800.0630*
H16B0.739400.646600.594200.0630*
H17A0.488400.632400.616000.0570*
H17B0.521300.691100.727500.0570*
H18A0.587400.722400.471400.0570*
H18B0.441500.737900.510300.0570*
H190.819500.970700.465000.0460*
H20A0.848801.092900.470500.0690*
H20B0.946701.077400.596400.0690*
H21A0.541001.052000.656300.0510*
H21B0.574901.068000.510900.0510*
U11U22U33U12U13U23
S10.0521 (2)0.0315 (2)0.0628 (2)−0.0031 (1)−0.0075 (2)−0.0057 (1)
O10.0453 (4)0.0319 (4)0.0373 (4)−0.0076 (3)0.0047 (3)−0.0043 (3)
O20.0605 (6)0.0298 (4)0.0528 (5)−0.0035 (3)−0.0103 (4)0.0067 (3)
O30.0342 (4)0.0459 (5)0.0514 (5)−0.0017 (3)0.0071 (3)0.0131 (4)
N10.0372 (4)0.0292 (4)0.0343 (4)−0.0051 (3)−0.0041 (3)0.0056 (3)
C10.0343 (5)0.0290 (4)0.0336 (5)−0.0023 (4)−0.0007 (4)0.0051 (4)
C20.0359 (5)0.0394 (6)0.0527 (7)−0.0063 (4)−0.0007 (5)0.0065 (5)
C30.0338 (6)0.0527 (7)0.0663 (8)0.0000 (5)0.0097 (5)0.0116 (6)
C40.0426 (6)0.0506 (7)0.0590 (8)0.0076 (5)0.0172 (5)0.0041 (6)
C50.0399 (5)0.0364 (5)0.0435 (6)0.0037 (4)0.0058 (4)−0.0010 (4)
C60.0309 (4)0.0277 (4)0.0323 (4)0.0010 (3)−0.0006 (3)0.0042 (3)
C70.0315 (4)0.0247 (4)0.0299 (4)−0.0011 (3)−0.0016 (3)0.0012 (3)
C80.0319 (4)0.0299 (4)0.0347 (5)0.0002 (3)0.0031 (3)0.0018 (4)
C90.0298 (4)0.0331 (5)0.0380 (5)0.0053 (4)0.0017 (4)0.0011 (4)
C100.0387 (6)0.0412 (6)0.0479 (6)0.0014 (4)−0.0049 (4)−0.0024 (5)
C110.0407 (6)0.0623 (9)0.0484 (7)0.0022 (5)−0.0094 (5)−0.0050 (6)
C120.0423 (6)0.0658 (9)0.0443 (6)0.0132 (6)−0.0043 (5)0.0077 (6)
C130.0456 (6)0.0459 (7)0.0477 (6)0.0105 (5)0.0015 (5)0.0108 (5)
C140.0360 (5)0.0349 (5)0.0405 (5)0.0060 (4)0.0016 (4)0.0024 (4)
C150.0603 (8)0.0290 (5)0.0624 (8)0.0007 (5)0.0048 (6)0.0076 (5)
C160.0625 (8)0.0299 (5)0.0666 (9)−0.0033 (5)0.0146 (6)−0.0068 (5)
C170.0575 (7)0.0320 (5)0.0539 (7)−0.0119 (5)0.0087 (6)−0.0045 (5)
C180.0639 (8)0.0369 (6)0.0414 (6)−0.0127 (5)0.0025 (5)−0.0084 (5)
C190.0454 (6)0.0340 (5)0.0367 (5)−0.0031 (4)0.0075 (4)0.0031 (4)
C200.0490 (7)0.0384 (6)0.0860 (11)−0.0081 (5)0.0170 (7)0.0104 (7)
C210.0378 (5)0.0338 (5)0.0543 (7)−0.0020 (4)−0.0087 (5)0.0119 (5)
S1—C201.7968 (16)C16—C171.533 (2)
S1—C211.8255 (12)C17—C181.5196 (18)
O1—C11.3606 (13)C19—C201.5236 (18)
O1—C181.4423 (15)C2—H20.9300
O2—C141.3623 (14)C3—H30.9300
O2—C151.4210 (15)C4—H40.9300
O3—C81.4438 (14)C5—H50.9300
O3—C191.4137 (14)C7—H70.9800
N1—C71.4820 (13)C8—H80.9800
N1—C191.4700 (15)C10—H100.9300
N1—C211.4476 (14)C11—H110.9300
C1—C21.3930 (16)C12—H120.9300
C1—C61.4081 (15)C13—H130.9300
C2—C31.3820 (19)C15—H15A0.9700
C3—C41.375 (2)C15—H15B0.9700
C4—C51.3905 (18)C16—H16A0.9700
C5—C61.3903 (16)C16—H16B0.9700
C6—C71.5070 (14)C17—H17A0.9700
C7—C81.5259 (14)C17—H17B0.9700
C8—C91.5047 (15)C18—H18A0.9700
C9—C101.3870 (16)C18—H18B0.9700
C9—C141.3990 (15)C19—H190.9800
C10—C111.3927 (19)C20—H20A0.9700
C11—C121.368 (2)C20—H20B0.9700
C12—C131.390 (2)C21—H21A0.9700
C13—C141.3918 (17)C21—H21B0.9700
C15—C161.504 (2)
C20—S1—C2187.50 (6)C6—C5—H5119.00
C1—O1—C18118.15 (9)N1—C7—H7108.00
C14—O2—C15119.29 (10)C6—C7—H7108.00
C8—O3—C19106.75 (8)C8—C7—H7108.00
C7—N1—C19105.55 (8)O3—C8—H8110.00
C7—N1—C21114.52 (9)C7—C8—H8110.00
C19—N1—C21109.41 (9)C9—C8—H8110.00
O1—C1—C2123.22 (10)C9—C10—H10119.00
O1—C1—C6116.73 (9)C11—C10—H10119.00
C2—C1—C6120.03 (10)C10—C11—H11120.00
C1—C2—C3120.57 (12)C12—C11—H11120.00
C2—C3—C4120.55 (12)C11—C12—H12120.00
C3—C4—C5118.80 (12)C13—C12—H12120.00
C4—C5—C6122.52 (12)C12—C13—H13120.00
C1—C6—C5117.53 (10)C14—C13—H13120.00
C1—C6—C7124.94 (9)O2—C15—H15A110.00
C5—C6—C7117.30 (9)O2—C15—H15B110.00
N1—C7—C6110.92 (8)C16—C15—H15A110.00
N1—C7—C8100.42 (8)C16—C15—H15B110.00
C6—C7—C8121.22 (8)H15A—C15—H15B108.00
O3—C8—C7100.96 (8)C15—C16—H16A108.00
O3—C8—C9109.25 (8)C15—C16—H16B108.00
C7—C8—C9116.43 (8)C17—C16—H16A108.00
C8—C9—C10121.92 (10)C17—C16—H16B108.00
C8—C9—C14119.49 (10)H16A—C16—H16B107.00
C10—C9—C14118.58 (10)C16—C17—H17A108.00
C9—C10—C11121.08 (12)C16—C17—H17B108.00
C10—C11—C12119.57 (13)C18—C17—H17A108.00
C11—C12—C13120.88 (13)C18—C17—H17B108.00
C12—C13—C14119.37 (13)H17A—C17—H17B107.00
O2—C14—C9114.90 (10)O1—C18—H18A109.00
O2—C14—C13124.59 (11)O1—C18—H18B109.00
C9—C14—C13120.51 (11)C17—C18—H18A109.00
O2—C15—C16107.90 (11)C17—C18—H18B109.00
C15—C16—C17115.67 (12)H18A—C18—H18B108.00
C16—C17—C18116.46 (12)O3—C19—H19109.00
O1—C18—C17114.82 (10)N1—C19—H19109.00
O3—C19—N1107.02 (9)C20—C19—H19109.00
O3—C19—C20111.05 (10)S1—C20—H20A110.00
N1—C19—C20110.70 (10)S1—C20—H20B110.00
S1—C20—C19107.32 (10)C19—C20—H20A110.00
S1—C21—N1107.36 (8)C19—C20—H20B110.00
C1—C2—H2120.00H20A—C20—H20B109.00
C3—C2—H2120.00S1—C21—H21A110.00
C2—C3—H3120.00S1—C21—H21B110.00
C4—C3—H3120.00N1—C21—H21A110.00
C3—C4—H4121.00N1—C21—H21B110.00
C5—C4—H4121.00H21A—C21—H21B109.00
C4—C5—H5119.00
C21—S1—C20—C19−32.36 (10)C4—C5—C6—C7173.95 (11)
C20—S1—C21—N139.77 (9)C4—C5—C6—C1−0.75 (17)
C18—O1—C1—C2−13.60 (15)C5—C6—C7—C8141.10 (10)
C18—O1—C1—C6167.96 (10)C5—C6—C7—N1−101.65 (11)
C1—O1—C18—C17−68.41 (14)C1—C6—C7—C8−44.64 (14)
C14—O2—C15—C16−172.86 (11)C1—C6—C7—N172.61 (12)
C15—O2—C14—C9177.78 (11)N1—C7—C8—C9160.85 (9)
C15—O2—C14—C13−2.20 (18)C6—C7—C8—O3165.12 (8)
C8—O3—C19—C20140.90 (10)C6—C7—C8—C9−76.76 (12)
C8—O3—C19—N119.98 (11)N1—C7—C8—O342.72 (9)
C19—O3—C8—C9−162.56 (9)C7—C8—C9—C10−76.25 (13)
C19—O3—C8—C7−39.33 (10)O3—C8—C9—C14−141.97 (10)
C21—N1—C19—C2011.04 (14)C7—C8—C9—C14104.54 (11)
C19—N1—C7—C6−160.77 (8)O3—C8—C9—C1037.25 (14)
C7—N1—C19—C20−112.65 (11)C8—C9—C14—C13178.22 (10)
C19—N1—C21—S1−35.51 (11)C8—C9—C10—C11−178.96 (11)
C21—N1—C7—C8−151.80 (9)C8—C9—C14—O2−1.76 (15)
C21—N1—C19—O3132.18 (9)C14—C9—C10—C110.26 (17)
C19—N1—C7—C8−31.39 (9)C10—C9—C14—C13−1.02 (17)
C7—N1—C19—O38.49 (10)C10—C9—C14—O2179.01 (10)
C21—N1—C7—C678.83 (11)C9—C10—C11—C120.45 (19)
C7—N1—C21—S182.72 (10)C10—C11—C12—C13−0.4 (2)
C2—C1—C6—C7−174.06 (10)C11—C12—C13—C14−0.3 (2)
C2—C1—C6—C50.19 (16)C12—C13—C14—O2−178.97 (12)
C6—C1—C2—C30.27 (18)C12—C13—C14—C91.06 (18)
O1—C1—C6—C5178.68 (10)O2—C15—C16—C17−60.14 (15)
O1—C1—C2—C3−178.11 (11)C15—C16—C17—C1896.72 (15)
O1—C1—C6—C74.43 (15)C16—C17—C18—O1−80.88 (15)
C1—C2—C3—C4−0.2 (2)O3—C19—C20—S1−100.26 (11)
C2—C3—C4—C5−0.3 (2)N1—C19—C20—S118.46 (13)
C3—C4—C5—C60.8 (2)
D—H···AD—HH···AD···AD—H···A
C8—H8···O10.982.302.9593 (13)123
C8—H8···O20.982.302.7146 (14)104
C3—H3···Cg1i0.932.993.8672 (14)158
C16—H16B···Cg1ii0.972.813.7400 (17)160
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C9–C14 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8⋯O10.982.302.9593 (13)123
C8—H8⋯O20.982.302.7146 (14)104
C3—H3⋯Cg1i 0.932.993.8672 (14)158
C16—H16BCg1ii 0.972.813.7400 (17)160

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of some novel 2,4-disubstituted thiazoles as possible antimicrobial agents.

Authors:  Prakash Karegoudar; Mari Sithambaram Karthikeyan; Dasappa Jagadeesh Prasad; Manjathuru Mahalinga; Bantwal Shivarama Holla; Nalilu Sucheta Kumari
Journal:  Eur J Med Chem       Date:  2007-04-03       Impact factor: 6.514

3.  Structure validation in chemical crystallography.

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  3 in total

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