Literature DB >> 23795062

Ethyl 2-[4-(di-methyl-amino)-phen-yl]-1-phenyl-1H-benzimidazole-5-carboxyl-ate.

Keng Yoon Yeong1, Mohamed Ashraf Ali, Tan Soo Choon, Mohd Mustaqim Rosli, Ibrahim Abdul Razak.   

Abstract

In the title compound, C24H23N3O2, the benzimidazole ring system makes dihedral angles of 7.28 (5) and 67.17 (5)°, respectively, with the planes of the benzene and phenyl rings, which in turn make a dihedral angle of 69.77 (6)°. In the crystal, mol-ecules are connected by C-H⋯N and C-H⋯O inter-actions, forming a layer parallel to the bc plane. A π-π inter-action, with a centroid-centroid distance of 3.656 (1) Å, is observed in the layer.

Entities:  

Year:  2013        PMID: 23795062      PMCID: PMC3685043          DOI: 10.1107/S1600536813012440

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of benzimidazole compounds, see: Rao et al. (2002 ▶); Thakurdesai et al. (2007 ▶); McKellar & Scott (1990 ▶). For a related structure, see: Yoon et al. (2012 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C24H23N3O2 M = 385.45 Triclinic, a = 8.7196 (1) Å b = 10.4133 (2) Å c = 11.3658 (2) Å α = 79.312 (1)° β = 74.393 (1)° γ = 89.781 (1)° V = 975.56 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.36 × 0.25 × 0.25 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.970, T max = 0.980 21016 measured reflections 5777 independent reflections 4602 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.125 S = 1.03 5777 reflections 265 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813012440/is5269sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813012440/is5269Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813012440/is5269Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H23N3O2Z = 2
Mr = 385.45F(000) = 408
Triclinic, P1Dx = 1.312 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.7196 (1) ÅCell parameters from 7512 reflections
b = 10.4133 (2) Åθ = 2.5–30.2°
c = 11.3658 (2) ŵ = 0.09 mm1
α = 79.312 (1)°T = 100 K
β = 74.393 (1)°Block, yellow
γ = 89.781 (1)°0.36 × 0.25 × 0.25 mm
V = 975.56 (3) Å3
Bruker SMART APEXII CCD area-detector diffractometer5777 independent reflections
Radiation source: fine-focus sealed tube4602 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
φ and ω scansθmax = 30.2°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.970, Tmax = 0.980k = −14→14
21016 measured reflectionsl = −15→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0552P)2 + 0.401P] where P = (Fo2 + 2Fc2)/3
5777 reflections(Δ/σ)max = 0.001
265 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.30 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.34962 (11)−0.05308 (9)0.29082 (8)0.02242 (19)
O21.18718 (12)0.04740 (9)0.18312 (9)0.0266 (2)
N10.98249 (12)0.30045 (9)0.65882 (9)0.0171 (2)
N20.88283 (12)0.33970 (10)0.49238 (9)0.0181 (2)
N30.41760 (14)0.72466 (11)0.79245 (11)0.0251 (2)
C11.05977 (14)0.22039 (11)0.57924 (11)0.0166 (2)
C21.17590 (15)0.12968 (11)0.58860 (11)0.0191 (2)
H2A1.21510.11160.66000.023*
C31.23128 (15)0.06738 (11)0.48914 (11)0.0189 (2)
H3A1.30980.00430.49230.023*
C41.17363 (14)0.09557 (11)0.38285 (11)0.0171 (2)
C51.05674 (14)0.18556 (11)0.37516 (11)0.0173 (2)
H5A1.01800.20400.30360.021*
C60.99820 (14)0.24776 (11)0.47532 (11)0.0167 (2)
C70.87548 (14)0.37009 (11)0.60175 (11)0.0171 (2)
C80.76152 (14)0.46126 (11)0.65582 (11)0.0178 (2)
C90.67109 (15)0.52985 (12)0.58132 (12)0.0205 (2)
H9A0.68800.51670.49840.025*
C100.55857 (15)0.61573 (12)0.62502 (12)0.0216 (2)
H10A0.50000.66020.57180.026*
C110.52922 (14)0.63840 (11)0.74735 (12)0.0192 (2)
C120.61759 (14)0.56812 (12)0.82302 (12)0.0197 (2)
H12A0.59980.58010.90640.024*
C130.72998 (14)0.48187 (12)0.77812 (11)0.0193 (2)
H13A0.78700.43560.83170.023*
C141.02675 (14)0.31301 (11)0.76961 (11)0.0169 (2)
C151.10245 (14)0.42822 (12)0.77495 (12)0.0199 (2)
H15A1.12470.49940.70620.024*
C161.14503 (15)0.43744 (13)0.88256 (12)0.0234 (3)
H16A1.19550.51600.88790.028*
C171.11435 (16)0.33248 (14)0.98248 (12)0.0251 (3)
H17A1.14320.33981.05590.030*
C181.04162 (15)0.21708 (13)0.97494 (12)0.0234 (3)
H18A1.02240.14501.04270.028*
C190.99673 (15)0.20678 (12)0.86827 (11)0.0195 (2)
H19A0.94620.12820.86300.023*
C201.23411 (14)0.02962 (11)0.27581 (11)0.0186 (2)
C211.40780 (16)−0.12580 (13)0.19169 (12)0.0237 (3)
H21A1.4474−0.06490.11090.028*
H21B1.3210−0.18340.18620.028*
C221.53955 (19)−0.20550 (18)0.22155 (17)0.0406 (4)
H22A1.5714−0.26510.16280.061*
H22B1.5030−0.25640.30650.061*
H22C1.6309−0.14740.21500.061*
C230.34150 (17)0.80634 (14)0.70882 (14)0.0289 (3)
H23A0.29640.75150.66380.043*
H23B0.42050.87010.64920.043*
H23C0.25620.85260.75690.043*
C240.41620 (17)0.76536 (13)0.90791 (13)0.0260 (3)
H24A0.38410.69040.97700.039*
H24B0.34040.83440.92190.039*
H24C0.52310.79880.90290.039*
U11U22U33U12U13U23
O10.0267 (5)0.0233 (4)0.0198 (4)0.0066 (4)−0.0075 (4)−0.0088 (3)
O20.0379 (5)0.0266 (5)0.0194 (5)0.0062 (4)−0.0131 (4)−0.0072 (4)
N10.0224 (5)0.0161 (5)0.0155 (5)0.0039 (4)−0.0093 (4)−0.0038 (4)
N20.0211 (5)0.0175 (5)0.0164 (5)0.0018 (4)−0.0070 (4)−0.0023 (4)
N30.0284 (6)0.0242 (5)0.0256 (6)0.0092 (4)−0.0107 (5)−0.0074 (4)
C10.0210 (5)0.0147 (5)0.0148 (5)0.0002 (4)−0.0062 (4)−0.0031 (4)
C20.0247 (6)0.0177 (5)0.0174 (5)0.0034 (4)−0.0105 (5)−0.0028 (4)
C30.0237 (6)0.0164 (5)0.0183 (6)0.0035 (4)−0.0085 (5)−0.0033 (4)
C40.0214 (5)0.0144 (5)0.0156 (5)−0.0008 (4)−0.0056 (4)−0.0022 (4)
C50.0216 (5)0.0173 (5)0.0143 (5)−0.0005 (4)−0.0076 (4)−0.0019 (4)
C60.0194 (5)0.0146 (5)0.0166 (5)−0.0001 (4)−0.0073 (4)−0.0011 (4)
C70.0200 (5)0.0145 (5)0.0169 (5)0.0005 (4)−0.0072 (4)−0.0001 (4)
C80.0197 (5)0.0159 (5)0.0179 (5)0.0007 (4)−0.0067 (4)−0.0012 (4)
C90.0240 (6)0.0217 (6)0.0173 (6)0.0036 (5)−0.0087 (5)−0.0034 (4)
C100.0232 (6)0.0214 (6)0.0219 (6)0.0045 (5)−0.0102 (5)−0.0020 (5)
C110.0190 (5)0.0167 (5)0.0218 (6)0.0010 (4)−0.0060 (5)−0.0026 (4)
C120.0215 (6)0.0199 (6)0.0180 (6)0.0018 (4)−0.0064 (4)−0.0028 (4)
C130.0217 (6)0.0190 (5)0.0174 (5)0.0021 (4)−0.0072 (4)−0.0013 (4)
C140.0195 (5)0.0194 (5)0.0141 (5)0.0046 (4)−0.0074 (4)−0.0049 (4)
C150.0213 (6)0.0193 (6)0.0195 (6)0.0023 (4)−0.0053 (4)−0.0050 (4)
C160.0223 (6)0.0270 (6)0.0240 (6)0.0006 (5)−0.0076 (5)−0.0108 (5)
C170.0244 (6)0.0356 (7)0.0193 (6)0.0040 (5)−0.0101 (5)−0.0095 (5)
C180.0254 (6)0.0286 (6)0.0166 (6)0.0041 (5)−0.0086 (5)−0.0010 (5)
C190.0220 (6)0.0187 (5)0.0191 (6)0.0020 (4)−0.0084 (5)−0.0026 (4)
C200.0224 (6)0.0154 (5)0.0178 (6)−0.0008 (4)−0.0053 (4)−0.0029 (4)
C210.0261 (6)0.0239 (6)0.0218 (6)0.0023 (5)−0.0035 (5)−0.0107 (5)
C220.0298 (7)0.0525 (10)0.0517 (10)0.0160 (7)−0.0183 (7)−0.0301 (8)
C230.0271 (7)0.0285 (7)0.0343 (7)0.0102 (5)−0.0137 (6)−0.0062 (6)
C240.0272 (6)0.0243 (6)0.0260 (7)0.0052 (5)−0.0054 (5)−0.0065 (5)
O1—C201.3478 (14)C11—C121.4099 (16)
O1—C211.4513 (15)C12—C131.3862 (17)
O2—C201.2127 (15)C12—H12A0.9500
N1—C11.3837 (15)C13—H13A0.9500
N1—C71.4011 (14)C14—C151.3904 (17)
N1—C141.4404 (14)C14—C191.3907 (16)
N2—C71.3238 (15)C15—C161.3897 (17)
N2—C61.3866 (15)C15—H15A0.9500
N3—C111.3829 (16)C16—C171.3908 (19)
N3—C241.4489 (17)C16—H16A0.9500
N3—C231.4500 (17)C17—C181.3882 (19)
C1—C21.3937 (16)C17—H17A0.9500
C1—C61.4070 (16)C18—C191.3923 (17)
C2—C31.3813 (17)C18—H18A0.9500
C2—H2A0.9500C19—H19A0.9500
C3—C41.4115 (16)C21—C221.491 (2)
C3—H3A0.9500C21—H21A0.9900
C4—C51.3909 (16)C21—H21B0.9900
C4—C201.4805 (17)C22—H22A0.9800
C5—C61.3908 (17)C22—H22B0.9800
C5—H5A0.9500C22—H22C0.9800
C7—C81.4653 (16)C23—H23A0.9800
C8—C131.3995 (17)C23—H23B0.9800
C8—C91.4069 (16)C23—H23C0.9800
C9—C101.3802 (17)C24—H24A0.9800
C9—H9A0.9500C24—H24B0.9800
C10—C111.4087 (18)C24—H24C0.9800
C10—H10A0.9500
C20—O1—C21115.44 (10)C8—C13—H13A119.2
C1—N1—C7106.59 (9)C15—C14—C19121.28 (11)
C1—N1—C14122.51 (9)C15—C14—N1120.01 (10)
C7—N1—C14130.52 (10)C19—C14—N1118.68 (11)
C7—N2—C6105.79 (10)C16—C15—C14118.87 (11)
C11—N3—C24119.19 (11)C16—C15—H15A120.6
C11—N3—C23119.82 (11)C14—C15—H15A120.6
C24—N3—C23117.76 (11)C15—C16—C17120.50 (12)
N1—C1—C2131.70 (11)C15—C16—H16A119.8
N1—C1—C6105.58 (10)C17—C16—H16A119.8
C2—C1—C6122.72 (11)C18—C17—C16120.03 (12)
C3—C2—C1116.81 (11)C18—C17—H17A120.0
C3—C2—H2A121.6C16—C17—H17A120.0
C1—C2—H2A121.6C17—C18—C19120.16 (12)
C2—C3—C4121.33 (11)C17—C18—H18A119.9
C2—C3—H3A119.3C19—C18—H18A119.9
C4—C3—H3A119.3C14—C19—C18119.14 (12)
C5—C4—C3121.25 (11)C14—C19—H19A120.4
C5—C4—C20117.45 (10)C18—C19—H19A120.4
C3—C4—C20121.30 (11)O2—C20—O1122.55 (11)
C6—C5—C4118.08 (10)O2—C20—C4124.51 (11)
C6—C5—H5A121.0O1—C20—C4112.95 (10)
C4—C5—H5A121.0O1—C21—C22107.42 (11)
N2—C6—C5130.04 (11)O1—C21—H21A110.2
N2—C6—C1110.18 (10)C22—C21—H21A110.2
C5—C6—C1119.77 (11)O1—C21—H21B110.2
N2—C7—N1111.84 (10)C22—C21—H21B110.2
N2—C7—C8122.37 (10)H21A—C21—H21B108.5
N1—C7—C8125.72 (11)C21—C22—H22A109.5
C13—C8—C9116.88 (11)C21—C22—H22B109.5
C13—C8—C7125.18 (11)H22A—C22—H22B109.5
C9—C8—C7117.88 (11)C21—C22—H22C109.5
C10—C9—C8122.03 (12)H22A—C22—H22C109.5
C10—C9—H9A119.0H22B—C22—H22C109.5
C8—C9—H9A119.0N3—C23—H23A109.5
C9—C10—C11121.03 (11)N3—C23—H23B109.5
C9—C10—H10A119.5H23A—C23—H23B109.5
C11—C10—H10A119.5N3—C23—H23C109.5
N3—C11—C10121.81 (11)H23A—C23—H23C109.5
N3—C11—C12121.07 (11)H23B—C23—H23C109.5
C10—C11—C12117.11 (11)N3—C24—H24A109.5
C13—C12—C11121.30 (11)N3—C24—H24B109.5
C13—C12—H12A119.4H24A—C24—H24B109.5
C11—C12—H12A119.4N3—C24—H24C109.5
C12—C13—C8121.63 (11)H24A—C24—H24C109.5
C12—C13—H13A119.2H24B—C24—H24C109.5
C7—N1—C1—C2−179.19 (12)C8—C9—C10—C11−0.05 (19)
C14—N1—C1—C27.2 (2)C24—N3—C11—C10−166.84 (12)
C7—N1—C1—C61.38 (12)C23—N3—C11—C10−7.59 (19)
C14—N1—C1—C6−172.24 (10)C24—N3—C11—C1213.84 (18)
N1—C1—C2—C3−178.49 (12)C23—N3—C11—C12173.09 (12)
C6—C1—C2—C30.86 (18)C9—C10—C11—N3179.62 (12)
C1—C2—C3—C40.58 (18)C9—C10—C11—C12−1.04 (18)
C2—C3—C4—C5−1.15 (18)N3—C11—C12—C13−179.78 (12)
C2—C3—C4—C20179.44 (11)C10—C11—C12—C130.87 (18)
C3—C4—C5—C60.24 (17)C11—C12—C13—C80.40 (19)
C20—C4—C5—C6179.67 (10)C9—C8—C13—C12−1.47 (18)
C7—N2—C6—C5−178.08 (12)C7—C8—C13—C12−178.60 (11)
C7—N2—C6—C11.17 (13)C1—N1—C14—C15108.78 (13)
C4—C5—C6—N2−179.65 (11)C7—N1—C14—C15−63.17 (17)
C4—C5—C6—C11.16 (17)C1—N1—C14—C19−69.23 (15)
N1—C1—C6—N2−1.61 (13)C7—N1—C14—C19118.82 (13)
C2—C1—C6—N2178.89 (11)C19—C14—C15—C16−1.54 (18)
N1—C1—C6—C5177.73 (10)N1—C14—C15—C16−179.49 (11)
C2—C1—C6—C5−1.76 (18)C14—C15—C16—C170.87 (19)
C6—N2—C7—N1−0.27 (13)C15—C16—C17—C180.43 (19)
C6—N2—C7—C8−177.42 (10)C16—C17—C18—C19−1.10 (19)
C1—N1—C7—N2−0.73 (13)C15—C14—C19—C180.88 (18)
C14—N1—C7—N2172.19 (11)N1—C14—C19—C18178.86 (11)
C1—N1—C7—C8176.31 (11)C17—C18—C19—C140.45 (19)
C14—N1—C7—C8−10.77 (19)C21—O1—C20—O2−3.58 (17)
N2—C7—C8—C13169.33 (11)C21—O1—C20—C4176.91 (10)
N1—C7—C8—C13−7.41 (19)C5—C4—C20—O2−1.07 (18)
N2—C7—C8—C9−7.78 (17)C3—C4—C20—O2178.36 (12)
N1—C7—C8—C9175.48 (11)C5—C4—C20—O1178.43 (10)
C13—C8—C9—C101.30 (18)C3—C4—C20—O1−2.14 (16)
C7—C8—C9—C10178.65 (11)C20—O1—C21—C22177.00 (12)
D—H···AD—HH···AD···AD—H···A
C15—H15A···N2i0.952.573.4868 (16)164
C18—H18A···O2ii0.952.503.2217 (17)133
C19—H19A···O2iii0.952.383.3209 (16)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C15—H15A⋯N2i 0.952.573.4868 (16)164
C18—H18A⋯O2ii 0.952.503.2217 (17)133
C19—H19A⋯O2iii 0.952.383.3209 (16)170

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

Review 1.  The benzimidazole anthelmintic agents--a review.

Authors:  Q A McKellar; E W Scott
Journal:  J Vet Pharmacol Ther       Date:  1990-09       Impact factor: 1.786

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and anti-hIV activity of 1-(2,6-difluorophenyl)-1H,3H-thiazolo[3,4-a]benzimidazole structurally-related 1,2-substituted benzimidazoles.

Authors:  Angela Rao; Alba Chimirri; Erik De Clercq; Anna Maria Monforte; Pietro Monforte; Christophe Pannecouque; Maria Zappalà
Journal:  Farmaco       Date:  2002-10

4.  Ethyl 2-(4-nitro-phen-yl)-1-[3-(2-oxopyrrolidin-1-yl)prop-yl]-1H-benzimidazole-5-carboxyl-ate.

Authors:  Yeong Keng Yoon; Mohamed Ashraf Ali; Tan Soo Choon; Safra Izuani Jama Asik; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-10

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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