Literature DB >> 23795044

4',4',6',6'-Tetra-chloro-2-(6-methyl-pyridin-2-yl)-1H,2H-spiro-[naphtho-[1,2-e][1,3,2]oxaza-phosphinine-3,2'-[1,3,5,2,4,6]tri-aza-triphosphinine].

Muhammet Işıklan1, Omer Sonkaya, Tuncer Hökelek.   

Abstract

The title compound, C17H14Cl4N5OP3, is a spiro-phosphazene derivative with bulky naphthalene and pyridine rings. The phosphazene and the six-membered N/O rings are in flattened-boat and twisted-boat conformations, respectively. The naphthalene ring system and the pyridine ring are oriented at a dihedral angle of 18.06 (8)°. In the crystal, weak π-π stacking between the pyridine rings and between the pyridine rings and the naphthalene ring system [centroid-centroid distances = 3.594 (2) and 3.961 (2) Å, respectively] occur. Weak C-H⋯π inter-actions are also observed. These interactions link the molecules into a three-dimensional supramolecular network.

Entities:  

Year:  2013        PMID: 23795044      PMCID: PMC3685025          DOI: 10.1107/S1600536813012348

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Fn class="Chemical">or products from the reaction of N3P3Cl6 with bifunctional reagents, see: Beşli et al. (2006 ▶). For N/O donor type bifunctional reagents used for the reaction of hexa­chloro­cyclo­triphosphazene giving spiro derivatives, see: Beşli et al. (2007 ▶); Sournies et al. (1997 ▶); Deutsch & Shaw (1990 ▶); Işıklan et al. (2010 ▶); İlter et al. (2004 ▶, 2007 ▶); Tercan et al. (2004 ▶). For industrial applications of cyclo­phosphazenes, see: Omotowa et al. (2004 ▶); Barbera et al. (2005 ▶); Schneider et al. (1999 ▶); Ding et al. (2005 ▶); Allcock (2006 ▶); Xu et al. (2006 ▶); Allcock & Wood (2006 ▶); Li et al. (2004 ▶); Singh et al. (2006 ▶); Greish et al. (2005 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the standard compound, N3P3Cl6, see: Bullen (1971 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C17H14Cl4N5OP3 M = 539.04 Orthorhombic, a = 21.7784 (5) Å b = 7.8573 (3) Å c = 25.1034 (5) Å V = 4295.7 (2) Å3 Z = 8 Mo Kα radiation μ = 0.80 mm−1 T = 100 K 0.38 × 0.28 × 0.08 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.752, T max = 0.939 22083 measured reflections 5297 independent reflections 3446 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.129 S = 1.01 5297 reflections 272 parameters H-atom parameters constrained Δρmax = 0.73 e Å−3 Δρmin = −0.77 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813012348/xu5701sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813012348/xu5701Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813012348/xu5701Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H14Cl4N5OP3F(000) = 2176
Mr = 539.04Dx = 1.667 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2741 reflections
a = 21.7784 (5) Åθ = 2.5–26.6°
b = 7.8573 (3) ŵ = 0.80 mm1
c = 25.1034 (5) ÅT = 100 K
V = 4295.7 (2) Å3Plate, colorless
Z = 80.38 × 0.28 × 0.08 mm
Bruker Kappa APEXII CCD area-detector diffractometer5297 independent reflections
Radiation source: fine-focus sealed tube3446 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.070
φ and ω scansθmax = 28.3°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −25→29
Tmin = 0.752, Tmax = 0.939k = −10→6
22083 measured reflectionsl = −31→33
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0611P)2 + 1.3984P] where P = (Fo2 + 2Fc2)/3
5297 reflections(Δ/σ)max < 0.001
272 parametersΔρmax = 0.73 e Å3
0 restraintsΔρmin = −0.77 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.23736 (4)0.09286 (12)0.33683 (4)0.0310 (2)
Cl20.12400 (4)−0.12370 (11)0.36507 (4)0.0315 (2)
Cl30.12654 (4)0.54678 (12)0.27056 (3)0.0268 (2)
Cl40.00013 (4)0.37802 (12)0.28234 (3)0.0277 (2)
P10.10765 (4)0.37524 (10)0.42559 (3)0.01570 (18)
P20.14946 (4)0.11972 (11)0.35899 (3)0.0203 (2)
P30.08161 (4)0.38196 (11)0.31822 (3)0.01836 (19)
O10.15089 (10)0.5220 (3)0.44668 (8)0.0188 (5)
N10.14830 (12)0.2097 (3)0.41488 (10)0.0195 (6)
N20.11206 (13)0.2007 (4)0.31138 (11)0.0243 (7)
N30.07526 (12)0.4618 (3)0.37531 (10)0.0183 (6)
N40.06038 (12)0.3449 (3)0.47683 (10)0.0161 (6)
N50.00488 (13)0.1705 (3)0.42067 (11)0.0220 (6)
C10.15699 (15)0.5167 (4)0.59375 (12)0.0170 (7)
C20.12413 (15)0.4649 (4)0.63968 (12)0.0197 (7)
H20.08610.40680.63570.024*
C30.14637 (16)0.4972 (4)0.68968 (13)0.0241 (8)
H30.12420.45850.71990.029*
C40.20163 (17)0.5872 (5)0.69686 (14)0.0279 (8)
H40.21630.61040.73170.033*
C50.23409 (16)0.6410 (4)0.65326 (14)0.0248 (8)
H50.27130.70210.65810.030*
C60.21268 (15)0.6066 (4)0.60098 (13)0.0202 (7)
C70.24658 (15)0.6603 (4)0.55567 (13)0.0213 (7)
H70.28390.72110.56060.026*
C80.22672 (15)0.6265 (4)0.50547 (13)0.0203 (7)
H80.24990.66120.47530.024*
C90.17088 (14)0.5387 (4)0.49938 (12)0.0167 (6)
C100.13573 (14)0.4829 (4)0.54063 (12)0.0164 (6)
C110.07536 (14)0.3917 (4)0.53259 (11)0.0147 (6)
H11A0.07580.28650.55430.018*
H11B0.04200.46510.54640.018*
C120.00836 (14)0.2393 (4)0.46936 (13)0.0184 (7)
C13−0.03482 (15)0.2132 (4)0.50891 (13)0.0182 (7)
H13−0.02920.25740.54380.022*
C14−0.08672 (15)0.1197 (4)0.49558 (14)0.0229 (7)
H14−0.11790.10020.52130.027*
C15−0.09263 (16)0.0552 (4)0.44471 (14)0.0244 (8)
H15−0.1287−0.00450.43460.029*
C16−0.04548 (17)0.0783 (4)0.40862 (14)0.0263 (8)
C17−0.0465 (2)−0.0028 (6)0.35445 (15)0.0493 (12)
H17A−0.03840.08380.32730.074*
H17B−0.0869−0.05390.34810.074*
H17C−0.0149−0.09130.35260.074*
U11U22U33U12U13U23
Cl10.0266 (5)0.0330 (5)0.0333 (5)0.0062 (4)0.0064 (4)−0.0064 (4)
Cl20.0411 (6)0.0177 (4)0.0357 (5)−0.0001 (4)0.0043 (4)−0.0053 (4)
Cl30.0293 (5)0.0327 (5)0.0184 (4)−0.0093 (4)0.0004 (3)0.0037 (3)
Cl40.0211 (4)0.0374 (5)0.0245 (4)−0.0040 (4)−0.0045 (3)0.0029 (4)
P10.0188 (4)0.0146 (4)0.0137 (4)0.0009 (4)0.0004 (3)−0.0004 (3)
P20.0245 (5)0.0173 (4)0.0192 (4)0.0029 (4)0.0014 (3)−0.0034 (3)
P30.0199 (4)0.0200 (4)0.0151 (4)−0.0005 (4)−0.0005 (3)0.0000 (3)
O10.0211 (12)0.0192 (12)0.0161 (11)−0.0042 (10)0.0013 (9)0.0005 (9)
N10.0233 (15)0.0169 (14)0.0182 (14)0.0053 (12)−0.0021 (11)−0.0008 (11)
N20.0315 (17)0.0241 (15)0.0174 (14)0.0053 (13)−0.0010 (11)−0.0054 (12)
N30.0222 (15)0.0169 (14)0.0159 (13)0.0050 (12)−0.0021 (11)0.0026 (11)
N40.0170 (14)0.0163 (14)0.0152 (12)−0.0027 (11)0.0010 (10)−0.0001 (10)
N50.0297 (16)0.0186 (14)0.0179 (13)−0.0036 (13)−0.0055 (11)0.0005 (11)
C10.0191 (17)0.0131 (16)0.0189 (15)0.0029 (13)0.0002 (12)0.0018 (12)
C20.0201 (17)0.0192 (17)0.0199 (16)−0.0004 (14)0.0011 (13)0.0006 (13)
C30.030 (2)0.0240 (18)0.0185 (16)0.0026 (15)−0.0009 (13)0.0006 (13)
C40.032 (2)0.031 (2)0.0212 (17)0.0033 (16)−0.0050 (14)−0.0046 (14)
C50.0244 (18)0.0215 (18)0.0286 (18)−0.0027 (16)−0.0045 (14)−0.0024 (14)
C60.0216 (17)0.0159 (17)0.0233 (16)0.0003 (14)−0.0043 (13)0.0003 (13)
C70.0166 (17)0.0177 (18)0.0295 (18)−0.0027 (13)0.0016 (13)−0.0011 (14)
C80.0221 (17)0.0166 (16)0.0223 (16)−0.0005 (15)0.0031 (13)0.0002 (13)
C90.0198 (17)0.0139 (16)0.0164 (15)0.0033 (13)−0.0017 (12)−0.0019 (12)
C100.0180 (16)0.0122 (15)0.0191 (15)0.0029 (13)0.0032 (12)0.0007 (12)
C110.0161 (15)0.0161 (15)0.0118 (13)0.0012 (13)−0.0002 (11)0.0025 (12)
C120.0187 (17)0.0129 (16)0.0235 (16)0.0020 (14)−0.0044 (13)0.0027 (13)
C130.0205 (17)0.0118 (15)0.0225 (16)0.0012 (14)0.0006 (13)0.0000 (13)
C140.0191 (17)0.0146 (16)0.0349 (19)0.0023 (14)0.0019 (14)0.0056 (14)
C150.0239 (18)0.0155 (16)0.0337 (19)−0.0032 (15)−0.0093 (15)0.0058 (14)
C160.035 (2)0.0184 (18)0.0251 (18)−0.0069 (16)−0.0101 (15)0.0037 (14)
C170.069 (3)0.054 (3)0.025 (2)−0.034 (2)−0.003 (2)−0.0021 (19)
Cl1—P22.0047 (12)C6—C51.419 (4)
Cl2—P21.9972 (13)C6—C71.420 (5)
Cl3—P32.0165 (12)C7—C81.358 (4)
Cl4—P31.9902 (12)C7—H70.9500
P1—O11.580 (2)C8—H80.9500
P1—N11.596 (3)C9—C81.407 (4)
P1—N31.598 (3)C10—C11.436 (4)
P1—N41.665 (3)C10—C91.360 (4)
P2—N11.571 (3)C11—C101.511 (4)
P2—N21.580 (3)C11—H11A0.9900
P3—N21.581 (3)C11—H11B0.9900
P3—N31.571 (3)C12—N51.339 (4)
O1—C91.399 (4)C12—C131.383 (4)
N4—C111.483 (4)C13—C141.389 (5)
N4—C121.416 (4)C13—H130.9500
C1—C21.417 (4)C14—C151.380 (5)
C1—C61.415 (4)C14—H140.9500
C2—C31.369 (4)C15—C161.381 (5)
C2—H20.9500C15—H150.9500
C3—H30.9500C16—N51.348 (4)
C4—C31.407 (5)C16—C171.502 (5)
C4—H40.9500C17—H17A0.9800
C5—C41.370 (5)C17—H17B0.9800
C5—H50.9500C17—H17C0.9800
O1—P1—N1108.71 (14)C1—C6—C7119.4 (3)
O1—P1—N3102.53 (13)C5—C6—C7120.9 (3)
O1—P1—N4102.37 (12)C6—C7—H7119.4
N1—P1—N3117.31 (14)C8—C7—C6121.3 (3)
N1—P1—N4110.87 (14)C8—C7—H7119.4
N3—P1—N4113.47 (14)C7—C8—C9118.2 (3)
Cl2—P2—Cl1100.69 (5)C7—C8—H8120.9
N1—P2—Cl1108.08 (11)C9—C8—H8120.9
N1—P2—Cl2110.98 (11)O1—C9—C8114.7 (3)
N1—P2—N2119.09 (15)C10—C9—O1121.0 (3)
N2—P2—Cl1108.95 (12)C10—C9—C8124.2 (3)
N2—P2—Cl2107.47 (12)C1—C10—C11119.5 (3)
Cl4—P3—Cl3100.03 (5)C9—C10—C1117.8 (3)
N2—P3—Cl3108.10 (12)C9—C10—C11122.7 (3)
N2—P3—Cl4108.11 (11)N4—C11—C10115.8 (2)
N3—P3—Cl3109.12 (11)N4—C11—H11A108.3
N3—P3—Cl4109.92 (11)N4—C11—H11B108.3
N3—P3—N2119.75 (14)C10—C11—H11A108.3
C9—O1—P1124.78 (19)C10—C11—H11B108.3
P2—N1—P1121.72 (17)H11A—C11—H11B107.4
P2—N2—P3119.79 (17)N5—C12—N4113.8 (3)
P3—N3—P1120.78 (17)N5—C12—C13123.8 (3)
C11—N4—P1123.9 (2)C13—C12—N4122.4 (3)
C12—N4—P1118.4 (2)C12—C13—C14117.3 (3)
C12—N4—C11116.5 (2)C12—C13—H13121.3
C12—N5—C16117.9 (3)C14—C13—H13121.3
C6—C1—C2118.2 (3)C13—C14—H14120.2
C6—C1—C10119.2 (3)C15—C14—C13119.5 (3)
C2—C1—C10122.6 (3)C15—C14—H14120.2
C1—C2—H2119.5C14—C15—C16119.3 (3)
C3—C2—C1120.9 (3)C14—C15—H15120.4
C3—C2—H2119.5C16—C15—H15120.4
C2—C3—C4120.9 (3)N5—C16—C15121.9 (3)
C2—C3—H3119.6N5—C16—C17116.3 (3)
C4—C3—H3119.6C15—C16—C17121.8 (3)
C3—C4—H4120.2C16—C17—H17A109.5
C5—C4—C3119.6 (3)C16—C17—H17B109.5
C5—C4—H4120.2C16—C17—H17C109.5
C4—C5—C6120.7 (3)H17A—C17—H17B109.5
C4—C5—H5119.6H17A—C17—H17C109.5
C6—C5—H5119.6H17B—C17—H17C109.5
C1—C6—C5119.7 (3)
N1—P1—O1—C9−81.1 (3)C10—C1—C2—C3179.0 (3)
N3—P1—O1—C9154.0 (2)C2—C1—C6—C50.4 (5)
N4—P1—O1—C936.2 (3)C2—C1—C6—C7−179.9 (3)
O1—P1—N1—P2−123.90 (19)C10—C1—C6—C5179.9 (3)
N3—P1—N1—P2−8.3 (3)C10—C1—C6—C7−0.4 (5)
N4—P1—N1—P2124.32 (19)C1—C2—C3—C41.8 (5)
O1—P1—N3—P3121.15 (19)C5—C4—C3—C2−0.9 (5)
N1—P1—N3—P32.2 (3)C6—C5—C4—C3−0.2 (5)
N4—P1—N3—P3−129.23 (18)C1—C6—C5—C40.5 (5)
O1—P1—N4—C11−22.8 (3)C7—C6—C5—C4−179.2 (3)
O1—P1—N4—C12170.1 (2)C1—C6—C7—C8−0.3 (5)
N1—P1—N4—C1193.0 (3)C5—C6—C7—C8179.4 (3)
N1—P1—N4—C12−74.1 (3)C6—C7—C8—C91.0 (5)
N3—P1—N4—C11−132.5 (2)O1—C9—C8—C7174.6 (3)
N3—P1—N4—C1260.4 (3)C10—C9—C8—C7−1.0 (5)
Cl1—P2—N1—P1128.10 (17)C9—C10—C1—C2179.9 (3)
Cl2—P2—N1—P1−122.37 (17)C9—C10—C1—C60.4 (4)
N2—P2—N1—P13.2 (3)C11—C10—C1—C21.3 (5)
Cl1—P2—N2—P3−116.35 (18)C11—C10—C1—C6−178.2 (3)
Cl2—P2—N2—P3135.37 (17)C1—C10—C9—O1−175.1 (3)
N1—P2—N2—P38.2 (3)C1—C10—C9—C80.3 (5)
Cl3—P3—N2—P2111.53 (18)C11—C10—C9—O13.5 (5)
Cl4—P3—N2—P2−141.03 (17)C11—C10—C9—C8178.9 (3)
N3—P3—N2—P2−14.2 (3)N4—C11—C10—C1−173.4 (3)
Cl3—P3—N3—P1−116.34 (17)N4—C11—C10—C98.1 (4)
Cl4—P3—N3—P1134.90 (16)N4—C12—N5—C16−175.2 (3)
N2—P3—N3—P18.9 (3)C13—C12—N5—C164.0 (5)
P1—O1—C9—C8154.1 (2)N4—C12—C13—C14174.3 (3)
P1—O1—C9—C10−30.1 (4)N5—C12—C13—C14−4.7 (5)
P1—N4—C11—C104.4 (4)C12—C13—C14—C151.1 (5)
C12—N4—C11—C10171.6 (3)C13—C14—C15—C162.9 (5)
P1—N4—C12—N52.2 (4)C14—C15—C16—N5−3.8 (5)
P1—N4—C12—C13−177.0 (2)C14—C15—C16—C17174.1 (4)
C11—N4—C12—N5−165.9 (3)C15—C16—N5—C120.4 (5)
C11—N4—C12—C1315.0 (4)C17—C16—N5—C12−177.6 (3)
C6—C1—C2—C3−1.5 (5)
D—H···AD—HH···AD···AD—H···A
C5—H5···Cg2i0.952.973.746 (4)140
C7—H7···Cg3i0.952.823.507 (3)130
Table 1

Selected bond lengths (Å)

P1—O11.580 (2)
P1—N11.596 (3)
P1—N31.598 (3)
P1—N41.665 (3)
P2—N11.571 (3)
P2—N21.580 (3)
P3—N21.581 (3)
P3—N31.571 (3)
Table 2

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C8-benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7⋯Cg3i 0.952.823.507 (3)130

Symmetry code: (i) .

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Authors:  Y E Greish; J D Bender; S Lakshmi; P W Brown; H R Allcock; C T Laurencin
Journal:  Biomaterials       Date:  2005-01       Impact factor: 12.479

6.  A spiro to ansa rearrangement in cyclotriphosphazene derivatives.

Authors:  Serap Beşli; Simon J Coles; David B Davies; Michael B Hursthouse; Adem Kiliç; Robert A Shaw
Journal:  Dalton Trans       Date:  2007-05-04       Impact factor: 4.390

7.  Phosphorus-nitrogen compounds. 14. Synthesis, stereogenism, and structural investigations of novel n/o spirocyclic phosphazene derivatives.

Authors:  Elif Ece Ilter; Nuran Asmafiliz; Zeynel Kiliç; Muhammet Isiklan; Tuncer Hökelek; Nagihan Caylak; Ertan Sahin
Journal:  Inorg Chem       Date:  2007-10-17       Impact factor: 5.165

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  1 in total

1.  2-(4-Methyl-pyridin-2-yl)-4',4',6',6'-tetra-kis-(pyrrolidin-1-yl)-1H,2H-spiro-[naphtho-[1,2-e][1,3,2]oxaza-phosphinine-3,2'-[1,3,5,2,4,6]tri-aza-triphosphinine].

Authors:  Muhammet Işıklan; Omer Sonkaya; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-31
  1 in total

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