Literature DB >> 23795032

3,5-Dimethyl-1-{2-[(5-methyl-1,3,4-thia-diazol-2-yl)sulfan-yl]acet-yl}-2,6-diphenylpiperidin-4-one.

S Ganesan1, P Sugumar, S Ananthan, M N Ponnuswamy.   

Abstract

In the title compound, C24H25N3O2S2, the piperidine ring adopts a distorted boat conformation. The phenyl rings subtend angles of 75.6 (1)° and 86.3 (1)° with the mean plane of the piperidine ring. In the crystal, mol-ecules are linked through a network C-H⋯N hydrogen bonds, forming zigzag chains along [100]. The thia-diazol ring methyl group is disordered over two positions with an occupancy ratio of 0.69 (4):0.31 (4).

Entities:  

Year:  2013        PMID: 23795032      PMCID: PMC3684930          DOI: 10.1107/S1600536813012014

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of piperidine derivatives, see: Aridoss et al. (2009 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶) and for asymmetry parameters, see: Nardelli (1983 ▶). For hydrogen-bond motifs, see: Bernstein et al.(1995 ▶).

Experimental

Crystal data

C24H25N3O2S2 M = 451.59 Orthorhombic, a = 9.1342 (6) Å b = 9.2874 (6) Å c = 27.0454 (14) Å V = 2294.3 (2) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 293 K 0.30 × 0.30 × 0.25 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.927, T max = 0.938 10655 measured reflections 4215 independent reflections 3623 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.098 S = 1.06 4215 reflections 293 parameters 2 restraints H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.24 e Å−3 Absolute structure: Flack (1983 ▶), 1461 Friedel pairs Flack parameter: 0.26 (8) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813012014/ng5326sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813012014/ng5326Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813012014/ng5326Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H25N3O2S2F(000) = 952
Mr = 451.59Dx = 1.307 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 4138 reflections
a = 9.1342 (6) Åθ = 1.5–28.4°
b = 9.2874 (6) ŵ = 0.26 mm1
c = 27.0454 (14) ÅT = 293 K
V = 2294.3 (2) Å3Block, white crystalline
Z = 40.30 × 0.30 × 0.25 mm
Bruker SMART APEXII CCD diffractometer4215 independent reflections
Radiation source: fine-focus sealed tube3623 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
ω and φ scansθmax = 25.5°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −11→10
Tmin = 0.927, Tmax = 0.938k = −10→11
10655 measured reflectionsl = −32→32
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.098w = 1/[σ2(Fo2) + (0.0407P)2 + 0.4037P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.003
4215 reflectionsΔρmax = 0.18 e Å3
293 parametersΔρmin = −0.24 e Å3
2 restraintsAbsolute structure: Flack (1983), 1461 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.26 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C20.8537 (3)0.3491 (3)0.31092 (8)0.0434 (6)
H20.94120.40160.30030.052*
C30.7285 (3)0.4013 (3)0.27855 (9)0.0498 (6)
H30.74120.35940.24560.060*
C40.5804 (3)0.3549 (3)0.29802 (10)0.0557 (7)
C50.5761 (3)0.2856 (3)0.34821 (9)0.0468 (6)
H50.61130.18660.34420.056*
C60.6804 (2)0.3605 (3)0.38547 (8)0.0409 (5)
H60.63510.45230.39480.049*
C70.6940 (2)0.2704 (3)0.43237 (9)0.0420 (6)
C80.6392 (3)0.3216 (3)0.47632 (9)0.0565 (7)
H80.59260.41050.47730.068*
C90.6530 (4)0.2415 (4)0.51908 (11)0.0761 (10)
H90.61650.27760.54870.091*
C100.7197 (4)0.1100 (4)0.51842 (13)0.0766 (10)
H100.72950.05700.54740.092*
C110.7717 (4)0.0571 (4)0.47490 (13)0.0716 (9)
H110.8162−0.03290.47410.086*
C120.7588 (3)0.1361 (3)0.43181 (10)0.0559 (7)
H120.79410.09860.40220.067*
C130.8916 (3)0.1899 (3)0.30846 (8)0.0431 (6)
C141.0060 (3)0.1415 (3)0.33779 (9)0.0569 (7)
H141.05980.20740.35620.068*
C151.0411 (3)−0.0013 (4)0.34010 (12)0.0689 (9)
H151.1161−0.03160.36090.083*
C160.9671 (4)−0.1006 (3)0.31216 (12)0.0705 (9)
H160.9906−0.19780.31430.085*
C170.8584 (4)−0.0551 (3)0.28114 (12)0.0667 (8)
H170.8097−0.12090.26110.080*
C180.8208 (3)0.0898 (3)0.27956 (10)0.0535 (7)
H180.74630.11970.25850.064*
C190.7301 (4)0.5638 (3)0.27324 (12)0.0756 (9)
H19A0.82360.59410.26080.113*
H19B0.71300.60730.30490.113*
H19C0.65460.59290.25060.113*
C200.4220 (3)0.2764 (4)0.36868 (12)0.0714 (9)
H20A0.42430.23120.40060.107*
H20B0.36210.22050.34670.107*
H20C0.38200.37150.37170.107*
C210.9216 (3)0.4863 (3)0.38323 (9)0.0447 (6)
C220.8900 (3)0.5401 (3)0.43507 (9)0.0444 (6)
H22A0.90700.46410.45900.053*
H22B0.78890.57110.43770.053*
C230.9909 (3)0.7090 (3)0.50966 (9)0.0471 (6)
C240.9507 (4)0.7112 (5)0.59575 (11)0.0869 (12)
N10.8240 (2)0.3941 (2)0.36250 (7)0.0391 (4)
N21.0669 (3)0.8047 (3)0.53206 (9)0.0749 (8)
N31.0440 (3)0.8048 (3)0.58237 (9)0.0874 (10)
O10.4720 (3)0.3740 (3)0.27404 (9)0.1004 (9)
O21.0350 (2)0.5239 (2)0.36260 (7)0.0672 (6)
S11.01181 (9)0.68920 (7)0.44633 (2)0.0565 (2)
S20.88298 (10)0.60962 (11)0.54817 (3)0.0817 (3)
C25A0.884 (3)0.715 (3)0.6474 (4)0.123 (7)0.69 (4)
H25A0.88550.61980.66130.185*0.69 (4)
H25B0.78530.74900.64550.185*0.69 (4)
H25C0.94070.77840.66800.185*0.69 (4)
C25B0.951 (3)0.649 (3)0.6513 (6)0.076 (6)0.31 (4)
H25D1.04830.61770.65980.113*0.31 (4)
H25E0.88530.56820.65340.113*0.31 (4)
H25F0.92020.72240.67380.113*0.31 (4)
U11U22U33U12U13U23
C20.0469 (13)0.0527 (15)0.0307 (11)−0.0076 (12)0.0032 (10)−0.0014 (10)
C30.0618 (16)0.0515 (15)0.0360 (13)0.0021 (13)−0.0031 (11)−0.0025 (12)
C40.0517 (15)0.0668 (18)0.0485 (15)0.0017 (13)−0.0114 (12)−0.0039 (13)
C50.0402 (13)0.0516 (15)0.0485 (14)−0.0038 (11)−0.0022 (11)−0.0039 (12)
C60.0387 (12)0.0446 (13)0.0393 (12)0.0024 (10)0.0010 (10)−0.0030 (11)
C70.0361 (12)0.0488 (15)0.0411 (13)−0.0055 (11)0.0021 (10)−0.0002 (11)
C80.0613 (17)0.0627 (17)0.0456 (15)−0.0139 (14)0.0082 (13)−0.0046 (14)
C90.088 (2)0.100 (3)0.0400 (15)−0.036 (2)0.0062 (15)−0.0004 (18)
C100.074 (2)0.093 (3)0.063 (2)−0.032 (2)−0.0199 (17)0.030 (2)
C110.0616 (19)0.071 (2)0.082 (2)0.0007 (16)−0.0033 (17)0.0289 (19)
C120.0499 (14)0.0580 (16)0.0597 (17)0.0043 (13)0.0076 (13)0.0088 (14)
C130.0428 (13)0.0522 (14)0.0344 (11)−0.0030 (12)0.0071 (10)−0.0059 (11)
C140.0457 (14)0.0730 (18)0.0520 (15)0.0061 (15)0.0007 (13)−0.0141 (13)
C150.0548 (18)0.083 (2)0.0684 (19)0.0264 (17)0.0023 (15)−0.0010 (17)
C160.069 (2)0.0571 (17)0.085 (2)0.0112 (17)0.0170 (17)−0.0013 (17)
C170.072 (2)0.0482 (16)0.080 (2)−0.0047 (15)0.0036 (17)−0.0152 (15)
C180.0551 (16)0.0556 (16)0.0499 (15)−0.0007 (13)−0.0023 (12)−0.0042 (13)
C190.096 (3)0.0586 (18)0.072 (2)0.0069 (18)0.0009 (19)0.0069 (17)
C200.0438 (15)0.100 (3)0.0701 (19)−0.0074 (16)0.0006 (14)−0.0088 (19)
C210.0460 (14)0.0477 (14)0.0404 (13)−0.0020 (12)0.0018 (11)−0.0019 (11)
C220.0424 (12)0.0435 (13)0.0474 (14)−0.0041 (11)0.0012 (11)−0.0111 (11)
C230.0478 (13)0.0401 (13)0.0533 (14)−0.0038 (12)−0.0056 (12)−0.0073 (11)
C240.085 (2)0.128 (3)0.0478 (16)−0.058 (2)0.0071 (16)−0.0245 (19)
N10.0402 (10)0.0430 (11)0.0342 (9)−0.0039 (9)0.0017 (8)−0.0036 (9)
N20.097 (2)0.0737 (17)0.0540 (14)−0.0434 (16)0.0062 (13)−0.0155 (13)
N30.106 (2)0.105 (2)0.0513 (14)−0.057 (2)0.0087 (14)−0.0253 (15)
O10.0660 (14)0.159 (2)0.0759 (14)−0.0036 (16)−0.0281 (12)0.0246 (16)
O20.0582 (12)0.0878 (14)0.0554 (11)−0.0297 (11)0.0149 (10)−0.0213 (10)
S10.0768 (5)0.0470 (3)0.0457 (3)−0.0182 (3)0.0007 (3)−0.0046 (3)
S20.0872 (6)0.1083 (7)0.0495 (4)−0.0573 (5)0.0084 (4)−0.0189 (4)
C25A0.122 (10)0.190 (16)0.058 (4)−0.076 (11)0.007 (5)−0.031 (6)
C25B0.077 (11)0.117 (14)0.033 (5)−0.028 (9)0.015 (6)−0.015 (6)
C2—N11.481 (3)C16—C171.367 (4)
C2—C31.519 (3)C16—H160.9300
C2—C131.520 (3)C17—C181.389 (4)
C2—H20.9800C17—H170.9300
C3—C41.515 (4)C18—H180.9300
C3—C191.516 (4)C19—H19A0.9600
C3—H30.9800C19—H19B0.9600
C4—O11.197 (3)C19—H19C0.9600
C4—C51.503 (4)C20—H20A0.9600
C5—C201.515 (4)C20—H20B0.9600
C5—C61.552 (3)C20—H20C0.9600
C5—H50.9800C21—O21.227 (3)
C6—N11.484 (3)C21—N11.357 (3)
C6—C71.525 (3)C21—C221.516 (3)
C6—H60.9800C22—S11.802 (2)
C7—C81.375 (4)C22—H22A0.9700
C7—C121.381 (4)C22—H22B0.9700
C8—C91.380 (4)C23—N21.280 (3)
C8—H80.9300C23—S21.705 (3)
C9—C101.365 (5)C23—S11.733 (3)
C9—H90.9300C24—N31.270 (4)
C10—C111.361 (5)C24—C25A1.523 (10)
C10—H100.9300C24—C25B1.61 (2)
C11—C121.382 (4)C24—S21.711 (3)
C11—H110.9300N2—N31.377 (3)
C12—H120.9300C25A—H25A0.9600
C13—C181.376 (4)C25A—H25B0.9600
C13—C141.387 (4)C25A—H25C0.9600
C14—C151.366 (4)C25B—H25D0.9600
C14—H140.9300C25B—H25E0.9600
C15—C161.370 (5)C25B—H25F0.9600
C15—H150.9300
N1—C2—C3108.3 (2)C17—C16—C15119.3 (3)
N1—C2—C13110.96 (19)C17—C16—H16120.4
C3—C2—C13117.2 (2)C15—C16—H16120.4
N1—C2—H2106.6C16—C17—C18119.9 (3)
C3—C2—H2106.6C16—C17—H17120.1
C13—C2—H2106.6C18—C17—H17120.1
C4—C3—C19108.9 (2)C13—C18—C17121.4 (3)
C4—C3—C2112.4 (2)C13—C18—H18119.3
C19—C3—C2111.4 (2)C17—C18—H18119.3
C4—C3—H3108.0C3—C19—H19A109.5
C19—C3—H3108.0C3—C19—H19B109.5
C2—C3—H3108.0H19A—C19—H19B109.5
O1—C4—C5122.1 (3)C3—C19—H19C109.5
O1—C4—C3120.6 (3)H19A—C19—H19C109.5
C5—C4—C3117.3 (2)H19B—C19—H19C109.5
C4—C5—C20112.2 (2)C5—C20—H20A109.5
C4—C5—C6112.2 (2)C5—C20—H20B109.5
C20—C5—C6111.0 (2)H20A—C20—H20B109.5
C4—C5—H5107.0C5—C20—H20C109.5
C20—C5—H5107.0H20A—C20—H20C109.5
C6—C5—H5107.0H20B—C20—H20C109.5
N1—C6—C7113.06 (18)O2—C21—N1123.1 (2)
N1—C6—C5111.39 (18)O2—C21—C22119.2 (2)
C7—C6—C5110.1 (2)N1—C21—C22117.7 (2)
N1—C6—H6107.3C21—C22—S1106.97 (17)
C7—C6—H6107.3C21—C22—H22A110.3
C5—C6—H6107.3S1—C22—H22A110.3
C8—C7—C12118.5 (2)C21—C22—H22B110.3
C8—C7—C6120.0 (2)S1—C22—H22B110.3
C12—C7—C6121.4 (2)H22A—C22—H22B108.6
C7—C8—C9120.3 (3)N2—C23—S2113.6 (2)
C7—C8—H8119.8N2—C23—S1118.8 (2)
C9—C8—H8119.8S2—C23—S1127.58 (15)
C10—C9—C8120.8 (3)N3—C24—C25A120.8 (5)
C10—C9—H9119.6N3—C24—C25B120.7 (8)
C8—C9—H9119.6N3—C24—S2113.9 (2)
C11—C10—C9119.3 (3)C25A—C24—S2124.0 (4)
C11—C10—H10120.3C25B—C24—S2120.2 (8)
C9—C10—H10120.3C21—N1—C2116.55 (19)
C10—C11—C12120.6 (3)C21—N1—C6122.68 (19)
C10—C11—H11119.7C2—N1—C6119.78 (18)
C12—C11—H11119.7C23—N2—N3112.7 (2)
C7—C12—C11120.4 (3)C24—N3—N2112.5 (2)
C7—C12—H12119.8C23—S1—C22100.39 (12)
C11—C12—H12119.8C23—S2—C2487.25 (14)
C18—C13—C14117.4 (2)C24—C25A—H25A109.5
C18—C13—C2125.1 (2)C24—C25A—H25B109.5
C14—C13—C2117.5 (2)C24—C25A—H25C109.5
C15—C14—C13121.2 (3)C24—C25B—H25D109.5
C15—C14—H14119.4C24—C25B—H25E109.5
C13—C14—H14119.4H25D—C25B—H25E109.5
C14—C15—C16120.8 (3)C24—C25B—H25F109.5
C14—C15—H15119.6H25D—C25B—H25F109.5
C16—C15—H15119.6H25E—C25B—H25F109.5
N1—C2—C3—C4−52.8 (3)C13—C14—C15—C162.2 (5)
C13—C2—C3—C473.6 (3)C14—C15—C16—C171.0 (5)
N1—C2—C3—C1969.8 (3)C15—C16—C17—C18−2.2 (5)
C13—C2—C3—C19−163.8 (2)C14—C13—C18—C172.5 (4)
C19—C3—C4—O164.1 (4)C2—C13—C18—C17−177.1 (3)
C2—C3—C4—O1−171.9 (3)C16—C17—C18—C130.5 (5)
C19—C3—C4—C5−115.6 (3)O2—C21—C22—S115.4 (3)
C2—C3—C4—C58.4 (3)N1—C21—C22—S1−166.73 (18)
O1—C4—C5—C20−13.2 (4)O2—C21—N1—C2−5.2 (4)
C3—C4—C5—C20166.4 (3)C22—C21—N1—C2177.0 (2)
O1—C4—C5—C6−139.0 (3)O2—C21—N1—C6−173.8 (2)
C3—C4—C5—C640.6 (3)C22—C21—N1—C68.5 (3)
C4—C5—C6—N1−43.1 (3)C3—C2—N1—C21−117.4 (2)
C20—C5—C6—N1−169.6 (2)C13—C2—N1—C21112.6 (2)
C4—C5—C6—C7−169.4 (2)C3—C2—N1—C651.5 (3)
C20—C5—C6—C764.1 (3)C13—C2—N1—C6−78.4 (3)
N1—C6—C7—C8121.4 (2)C7—C6—N1—C21−70.2 (3)
C5—C6—C7—C8−113.2 (3)C5—C6—N1—C21165.2 (2)
N1—C6—C7—C12−59.6 (3)C7—C6—N1—C2121.6 (2)
C5—C6—C7—C1265.8 (3)C5—C6—N1—C2−3.0 (3)
C12—C7—C8—C91.9 (4)S2—C23—N2—N30.2 (4)
C6—C7—C8—C9−179.0 (2)S1—C23—N2—N3−177.5 (2)
C7—C8—C9—C10−0.7 (5)C25A—C24—N3—N2−166.3 (15)
C8—C9—C10—C11−0.6 (5)C25B—C24—N3—N2156.0 (14)
C9—C10—C11—C120.7 (5)S2—C24—N3—N21.3 (5)
C8—C7—C12—C11−1.8 (4)C23—N2—N3—C24−1.0 (5)
C6—C7—C12—C11179.2 (3)N2—C23—S1—C22177.6 (2)
C10—C11—C12—C70.5 (5)S2—C23—S1—C220.2 (2)
N1—C2—C13—C18124.6 (2)C21—C22—S1—C23−167.14 (17)
C3—C2—C13—C18−0.5 (3)N2—C23—S2—C240.4 (3)
N1—C2—C13—C14−55.0 (3)S1—C23—S2—C24177.8 (2)
C3—C2—C13—C14179.8 (2)N3—C24—S2—C23−1.0 (3)
C18—C13—C14—C15−3.8 (4)C25A—C24—S2—C23166.2 (16)
C2—C13—C14—C15175.8 (3)C25B—C24—S2—C23−155.8 (14)
D—H···AD—HH···AD···AD—H···A
C6—H6···N3i0.982.483.460 (4)175
C22—H22B···N2i0.972.473.403 (4)161
C22—H22B···N3i0.972.573.505 (4)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6⋯N3i 0.982.483.460 (4)175
C22—H22B⋯N2i 0.972.473.403 (4)161
C22—H22B⋯N3i 0.972.573.505 (4)161

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and spectral characterization of a new class of N-(N-methylpiperazinoacetyl)-2,6-diarylpiperidin-4-ones: antimicrobial, analgesic and antipyretic studies.

Authors:  G Aridoss; P Parthiban; R Ramachandran; M Prakash; S Kabilan; Yeon Tae Jeong
Journal:  Eur J Med Chem       Date:  2008-04-07       Impact factor: 6.514

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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