Literature DB >> 23795027

1-Methyl-3-(2-oxo-2H-chromen-3-yl)-1H-imidazol-3-ium picrate.

Nguyen Van Tuyen1, Le Tuan Anh, Alexey A Festa, Leonid G Voskressensky, Victor N Khrustalev.   

Abstract

The title salt, C13H11N2O2 (+)·C6H2N3O7 (-), is the unexpected product of a domino reaction of 3-cyano-methyl-1-methyl-imidazolium chloride with salicylic aldehyde in the presence of picric acid. In the cation, the 1H-imidazole ring is twisted by 63.2 (1)° from the 2H-chromen plane. In the crystal, cations and anions are alternately stacked along the a axis through π-π stacking inter-actions between the almost parallel aromatic rings [centroid-centroid distances = 3.458 (2) and 3.678 (2) Å]. The stacks are further linked by C-H⋯O hydrogen bonds into a two-tier layer parallel to (001).

Entities:  

Year:  2013        PMID: 23795027      PMCID: PMC3684925          DOI: 10.1107/S1600536813011690

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a recent review on coumarin-based drug patents, see: Kontogiorgis et al. (2012 ▶). For analogous domino reactions, see: Voskressensky et al. (2012a ▶,b ▶). For related compounds, see: Yu et al. (2006 ▶); Morris et al. (2011 ▶).

Experimental

Crystal data

C13H11N2O2 +·C6H2N3O7 − M = 455.34 Monoclinic, a = 6.8142 (12) Å b = 8.1942 (14) Å c = 16.832 (3) Å β = 100.081 (4)° V = 925.3 (3) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 100 K 0.30 × 0.21 × 0.03 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2003 ▶) T min = 0.961, T max = 0.996 10390 measured reflections 4415 independent reflections 3734 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.165 S = 1.00 4415 reflections 299 parameters 1 restraint H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813011690/is5268sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813011690/is5268Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813011690/is5268Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11N2O2+·C6H2N3O7F(000) = 468
Mr = 455.34Dx = 1.634 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3018 reflections
a = 6.8142 (12) Åθ = 2.5–30.2°
b = 8.1942 (14) ŵ = 0.13 mm1
c = 16.832 (3) ÅT = 100 K
β = 100.081 (4)°Plate, yellow
V = 925.3 (3) Å30.30 × 0.21 × 0.03 mm
Z = 2
Bruker APEXII CCD diffractometer4415 independent reflections
Radiation source: fine-focus sealed tube3734 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
φ and ω scansθmax = 28.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2003)h = −9→9
Tmin = 0.961, Tmax = 0.996k = −10→10
10390 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.165H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0754P)2 + 1.86P] where P = (Fo2 + 2Fc2)/3
4415 reflections(Δ/σ)max < 0.001
299 parametersΔρmax = 0.46 e Å3
1 restraintΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.8777 (4)0.6678 (3)0.68430 (15)0.0183 (5)
O20.8003 (4)0.5232 (4)0.57153 (15)0.0233 (6)
N10.9223 (4)0.2275 (4)0.64703 (18)0.0166 (6)
N20.8021 (5)0.0278 (4)0.57071 (17)0.0166 (6)
C20.8643 (5)0.5224 (5)0.6430 (2)0.0168 (7)
C30.9351 (5)0.3784 (5)0.6911 (2)0.0161 (7)
C41.0105 (5)0.3861 (5)0.7702 (2)0.0171 (7)
H41.05610.28990.79920.021*
C4A1.0217 (5)0.5408 (5)0.8103 (2)0.0165 (7)
C51.0926 (5)0.5595 (5)0.8937 (2)0.0178 (7)
H51.13650.46660.92570.021*
C61.0989 (5)0.7124 (5)0.9295 (2)0.0205 (8)
H61.14610.72400.98570.025*
C71.0352 (6)0.8501 (5)0.8821 (2)0.0223 (8)
H71.04200.95520.90630.027*
C80.9623 (6)0.8333 (5)0.8001 (2)0.0208 (8)
H80.91690.92570.76810.025*
C8A0.9570 (5)0.6794 (5)0.7661 (2)0.0172 (7)
C90.7529 (5)0.1610 (5)0.6077 (2)0.0163 (7)
H90.62180.20180.60640.020*
C101.0046 (6)0.0076 (5)0.5862 (2)0.0198 (7)
H101.0772−0.07860.56710.024*
C111.0826 (5)0.1338 (5)0.6341 (2)0.0200 (7)
H111.21950.15360.65460.024*
C120.6615 (6)−0.0810 (5)0.5195 (2)0.0218 (8)
H12A0.5247−0.05170.52450.033*
H12B0.6878−0.19420.53690.033*
H12C0.6784−0.06940.46320.033*
O30.4485 (4)0.3812 (3)0.67659 (15)0.0185 (5)
O40.7273 (4)0.1650 (4)0.85805 (18)0.0293 (7)
O50.4224 (5)0.1338 (4)0.79424 (19)0.0310 (7)
O60.6970 (5)0.6752 (4)1.02204 (16)0.0283 (7)
O70.5824 (4)0.8942 (3)0.95546 (17)0.0245 (6)
O80.4486 (4)0.8736 (3)0.66647 (16)0.0239 (6)
O90.2690 (4)0.6684 (4)0.61602 (16)0.0257 (6)
N30.5653 (5)0.2192 (4)0.82445 (19)0.0197 (6)
N40.6210 (5)0.7472 (4)0.95962 (18)0.0183 (6)
N50.3876 (5)0.7341 (4)0.67024 (19)0.0185 (6)
C130.4738 (5)0.4649 (4)0.7400 (2)0.0134 (7)
C140.5419 (5)0.3960 (5)0.8190 (2)0.0173 (7)
C150.5962 (5)0.4837 (4)0.8896 (2)0.0155 (7)
H150.64810.43100.93910.019*
C160.5717 (5)0.6527 (5)0.8853 (2)0.0159 (7)
C170.5037 (5)0.7321 (5)0.8138 (2)0.0161 (7)
H170.49080.84760.81250.019*
C180.4542 (5)0.6419 (5)0.7437 (2)0.0170 (7)
U11U22U33U12U13U23
O10.0207 (13)0.0180 (13)0.0157 (12)0.0025 (11)0.0020 (9)−0.0013 (10)
O20.0339 (16)0.0201 (14)0.0150 (12)−0.0014 (12)0.0016 (11)0.0006 (11)
N10.0142 (14)0.0172 (15)0.0181 (14)−0.0001 (12)0.0019 (11)−0.0001 (12)
N20.0237 (16)0.0131 (14)0.0130 (13)−0.0004 (12)0.0036 (11)−0.0013 (11)
C20.0155 (17)0.0147 (16)0.0212 (17)0.0007 (14)0.0062 (13)0.0011 (14)
C30.0155 (16)0.0133 (16)0.0195 (17)0.0007 (13)0.0035 (13)−0.0003 (14)
C40.0178 (16)0.0163 (17)0.0175 (16)0.0021 (14)0.0042 (13)0.0010 (14)
C4A0.0121 (16)0.0192 (18)0.0181 (16)−0.0026 (14)0.0024 (13)−0.0024 (14)
C50.0141 (17)0.0206 (18)0.0175 (17)0.0014 (14)−0.0002 (13)0.0014 (14)
C60.0167 (17)0.022 (2)0.0212 (18)−0.0030 (14)−0.0002 (13)−0.0036 (15)
C70.0167 (18)0.022 (2)0.028 (2)−0.0007 (15)0.0040 (15)−0.0101 (16)
C80.0208 (19)0.0158 (18)0.0256 (19)0.0011 (14)0.0038 (15)−0.0010 (14)
C8A0.0176 (17)0.0215 (18)0.0117 (15)−0.0002 (14)0.0010 (12)−0.0012 (14)
C90.0165 (16)0.0163 (17)0.0157 (16)0.0008 (14)0.0018 (12)−0.0001 (13)
C100.0222 (18)0.0217 (19)0.0169 (16)0.0009 (15)0.0072 (13)0.0022 (14)
C110.0163 (17)0.0250 (19)0.0192 (18)0.0025 (15)0.0047 (13)0.0031 (14)
C120.029 (2)0.0186 (19)0.0155 (17)−0.0051 (15)−0.0025 (14)−0.0030 (14)
O30.0197 (13)0.0201 (13)0.0150 (12)0.0018 (11)0.0011 (9)−0.0049 (11)
O40.0266 (15)0.0243 (15)0.0361 (16)0.0091 (12)0.0032 (12)0.0054 (13)
O50.0455 (18)0.0140 (14)0.0279 (15)−0.0041 (13)−0.0089 (13)0.0022 (11)
O60.0429 (17)0.0229 (15)0.0172 (13)−0.0014 (13)0.0000 (12)−0.0038 (11)
O70.0348 (15)0.0170 (14)0.0207 (13)−0.0002 (12)0.0022 (11)−0.0069 (11)
O80.0346 (16)0.0162 (13)0.0212 (13)−0.0008 (12)0.0061 (11)0.0041 (11)
O90.0310 (15)0.0231 (14)0.0195 (13)0.0036 (12)−0.0057 (11)−0.0036 (11)
N30.0268 (17)0.0144 (15)0.0179 (15)0.0034 (13)0.0041 (12)0.0003 (12)
N40.0204 (15)0.0182 (16)0.0172 (15)−0.0036 (12)0.0060 (12)−0.0042 (12)
N50.0173 (15)0.0213 (16)0.0170 (15)0.0028 (13)0.0036 (12)−0.0008 (12)
C130.0079 (16)0.0186 (18)0.0135 (15)−0.0004 (12)0.0015 (12)−0.0022 (12)
C140.0168 (17)0.0131 (17)0.0212 (18)0.0002 (14)0.0011 (13)0.0017 (14)
C150.0147 (17)0.0144 (17)0.0184 (17)−0.0013 (13)0.0051 (13)−0.0006 (13)
C160.0157 (16)0.0160 (17)0.0159 (16)−0.0011 (14)0.0023 (12)−0.0057 (14)
C170.0129 (16)0.0159 (17)0.0205 (17)−0.0002 (14)0.0062 (13)−0.0020 (14)
C180.0148 (17)0.0170 (18)0.0182 (17)−0.0003 (14)0.0002 (13)0.0003 (14)
O1—C21.374 (5)C10—C111.361 (6)
O1—C8A1.391 (4)C10—H100.9500
O2—C21.206 (5)C11—H110.9500
N1—C91.342 (5)C12—H12A0.9800
N1—C111.383 (5)C12—H12B0.9800
N1—C31.437 (5)C12—H12C0.9800
N2—C91.328 (5)O3—C131.255 (4)
N2—C101.369 (5)O4—N31.232 (4)
N2—C121.472 (5)O5—N31.235 (4)
C2—C31.464 (5)O6—N41.237 (4)
C3—C41.342 (5)O7—N41.232 (4)
C4—C4A1.433 (5)O8—N51.222 (4)
C4—H40.9500O9—N51.232 (4)
C4A—C8A1.387 (5)N3—C141.458 (5)
C4A—C51.410 (5)N4—C161.460 (4)
C5—C61.387 (6)N5—C181.452 (5)
C5—H50.9500C13—C141.445 (5)
C6—C71.405 (6)C13—C181.458 (5)
C6—H60.9500C14—C151.383 (5)
C7—C81.389 (6)C15—C161.395 (5)
C7—H70.9500C15—H150.9500
C8—C8A1.383 (5)C16—C171.376 (5)
C8—H80.9500C17—C181.383 (5)
C9—H90.9500C17—H170.9500
C2—O1—C8A122.7 (3)C11—C10—H10126.4
C9—N1—C11109.4 (3)N2—C10—H10126.4
C9—N1—C3125.0 (3)C10—C11—N1106.1 (3)
C11—N1—C3125.5 (3)C10—C11—H11126.9
C9—N2—C10109.8 (3)N1—C11—H11126.9
C9—N2—C12125.5 (3)N2—C12—H12A109.5
C10—N2—C12124.7 (3)N2—C12—H12B109.5
O2—C2—O1118.7 (3)H12A—C12—H12B109.5
O2—C2—C3125.7 (4)N2—C12—H12C109.5
O1—C2—C3115.6 (3)H12A—C12—H12C109.5
C4—C3—N1122.0 (3)H12B—C12—H12C109.5
C4—C3—C2122.9 (4)O4—N3—O5124.3 (3)
N1—C3—C2115.1 (3)O4—N3—C14117.8 (3)
C3—C4—C4A119.3 (4)O5—N3—C14117.9 (3)
C3—C4—H4120.4O7—N4—O6124.6 (3)
C4A—C4—H4120.4O7—N4—C16117.1 (3)
C8A—C4A—C5117.8 (3)O6—N4—C16118.3 (3)
C8A—C4A—C4119.1 (3)O8—N5—O9123.7 (3)
C5—C4A—C4123.1 (4)O8—N5—C18118.2 (3)
C6—C5—C4A120.6 (4)O9—N5—C18118.0 (3)
C6—C5—H5119.7O3—C13—C14122.9 (3)
C4A—C5—H5119.7O3—C13—C18125.4 (3)
C5—C6—C7119.7 (3)C14—C13—C18111.5 (3)
C5—C6—H6120.1C15—C14—C13125.6 (3)
C7—C6—H6120.1C15—C14—N3116.9 (3)
C8—C7—C6120.3 (4)C13—C14—N3117.4 (3)
C8—C7—H7119.8C14—C15—C16117.4 (3)
C6—C7—H7119.8C14—C15—H15121.3
C8A—C8—C7118.7 (4)C16—C15—H15121.3
C8A—C8—H8120.6C17—C16—C15122.3 (3)
C7—C8—H8120.6C17—C16—N4119.4 (3)
C8—C8A—C4A122.8 (3)C15—C16—N4118.3 (3)
C8—C8A—O1116.8 (3)C16—C17—C18119.2 (3)
C4A—C8A—O1120.5 (3)C16—C17—H17120.4
N2—C9—N1107.4 (3)C18—C17—H17120.4
N2—C9—H9126.3C17—C18—N5116.2 (3)
N1—C9—H9126.3C17—C18—C13123.9 (3)
C11—C10—N2107.3 (3)N5—C18—C13119.9 (3)
C8A—O1—C2—O2−177.4 (3)C12—N2—C10—C11178.7 (3)
C8A—O1—C2—C31.3 (5)N2—C10—C11—N10.6 (4)
C9—N1—C3—C4120.5 (4)C9—N1—C11—C10−0.5 (4)
C11—N1—C3—C4−64.0 (5)C3—N1—C11—C10−176.6 (3)
C9—N1—C3—C2−60.9 (5)O3—C13—C14—C15171.5 (4)
C11—N1—C3—C2114.6 (4)C18—C13—C14—C15−4.2 (5)
O2—C2—C3—C4177.9 (4)O3—C13—C14—N3−5.2 (5)
O1—C2—C3—C4−0.7 (5)C18—C13—C14—N3179.1 (3)
O2—C2—C3—N1−0.7 (5)O4—N3—C14—C15−50.5 (5)
O1—C2—C3—N1−179.4 (3)O5—N3—C14—C15130.3 (4)
N1—C3—C4—C4A179.1 (3)O4—N3—C14—C13126.5 (4)
C2—C3—C4—C4A0.6 (5)O5—N3—C14—C13−52.7 (5)
C3—C4—C4A—C8A−1.0 (5)C13—C14—C15—C164.2 (5)
C3—C4—C4A—C5177.9 (3)N3—C14—C15—C16−179.1 (3)
C8A—C4A—C5—C6−0.7 (5)C14—C15—C16—C17−2.4 (5)
C4—C4A—C5—C6−179.6 (3)C14—C15—C16—N4177.7 (3)
C4A—C5—C6—C7−0.4 (5)O7—N4—C16—C176.1 (5)
C5—C6—C7—C81.3 (6)O6—N4—C16—C17−174.2 (3)
C6—C7—C8—C8A−1.1 (6)O7—N4—C16—C15−174.1 (3)
C7—C8—C8A—C4A−0.1 (6)O6—N4—C16—C155.6 (5)
C7—C8—C8A—O1178.3 (3)C15—C16—C17—C181.2 (5)
C5—C4A—C8A—C81.0 (5)N4—C16—C17—C18−179.0 (3)
C4—C4A—C8A—C8179.9 (4)C16—C17—C18—N5−178.7 (3)
C5—C4A—C8A—O1−177.3 (3)C16—C17—C18—C13−1.5 (5)
C4—C4A—C8A—O11.6 (5)O8—N5—C18—C1727.9 (5)
C2—O1—C8A—C8179.8 (3)O9—N5—C18—C17−150.4 (3)
C2—O1—C8A—C4A−1.8 (5)O8—N5—C18—C13−149.4 (3)
C10—N2—C9—N10.1 (4)O9—N5—C18—C1332.3 (5)
C12—N2—C9—N1−179.0 (3)O3—C13—C18—C17−172.8 (3)
C11—N1—C9—N20.3 (4)C14—C13—C18—C172.8 (5)
C3—N1—C9—N2176.4 (3)O3—C13—C18—N54.3 (5)
C9—N2—C10—C11−0.4 (4)C14—C13—C18—N5179.9 (3)
D—H···AD—HH···AD···AD—H···A
C5—H5···O7i0.952.583.349 (4)138
C9—H9···O30.952.333.122 (5)140
C10—H10···O9ii0.952.513.303 (5)141
C11—H11···O3iii0.952.423.196 (5)139
C11—H11···O5iii0.952.513.231 (5)132
C12—H12A···O2iv0.982.583.360 (5)137
C12—H12B···O2v0.982.483.448 (5)171
C12—H12C···O3iv0.982.393.269 (4)148
C12—H12C···O9iv0.982.423.160 (5)132
C17—H17···O5vi0.952.403.345 (5)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5⋯O7i 0.952.583.349 (4)138
C9—H9⋯O30.952.333.122 (5)140
C10—H10⋯O9ii 0.952.513.303 (5)141
C11—H11⋯O3iii 0.952.423.196 (5)139
C11—H11⋯O5iii 0.952.513.231 (5)132
C12—H12A⋯O2iv 0.982.583.360 (5)137
C12—H12B⋯O2v 0.982.483.448 (5)171
C12—H12C⋯O3iv 0.982.393.269 (4)148
C12—H12C⋯O9iv 0.982.423.160 (5)132
C17—H17⋯O5vi 0.952.403.345 (5)172

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Coumarin-based drugs: a patent review (2008 -- present).

Authors:  Christos Kontogiorgis; Anastasia Detsi; Dimitra Hadjipavlou-Litina
Journal:  Expert Opin Ther Pat       Date:  2012-04       Impact factor: 6.674

3.  Generation of profluorescent isoindoline nitroxides using click chemistry.

Authors:  Jason C Morris; John C McMurtrie; Steven E Bottle; Kathryn E Fairfull-Smith
Journal:  J Org Chem       Date:  2011-05-17       Impact factor: 4.354

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.