Literature DB >> 23794973

2-Amino-5-bromo-pyridin-1-ium (2-amino-5-bromo-pyridine-κN (1))trichloridozincate.

Kanidtha Hansongnern, Nararak Leesakul, Chaveng Pakawatchai, Saowanit Saithong.   

Abstract

The structure of the title salt, (C5H6BrN2)[ZnCl3(C5H5BrN2)], consists of discrete 2-amino-5-bromo-pyridin-1-ium cations and distorted tetra-hedral (2-amino-5-bromo-pyridine)-tri-chlorido-zincate anions. In the crystal, the complex anions and cations are linked via N-H⋯Cl hydrogen bonds into layers parallel to (101). Short Br⋯Cl contacts of 3.4239 (11) and 3.4503 (12) Å are observed, as well as π-π stacking inter-actions between the pyridine and pyridinium rings, with alternating centroid-to-centroid distances of 3.653 (2) and 3.845 (2) Å.

Entities:  

Year:  2013        PMID: 23794973      PMCID: PMC3684871          DOI: 10.1107/S1600536813011884

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of substituted pyridines, see: Janiak et al. (1999 ▶); Hubrich et al. (2010 ▶); Wei et al. (2012 ▶). For the biological activities and electrochemical properties of pyridine derivatives, see: Jo et al. (2004 ▶); Xiao et al. (2012 ▶).

Experimental

Crystal data

(C5H6BrN2)[ZnCl3(C5H5BrN2)] M = 518.77 Monoclinic, a = 9.4238 (4) Å b = 13.6544 (6) Å c = 13.5679 (6) Å β = 104.349 (1)° V = 1691.40 (13) Å3 Z = 4 Mo Kα radiation μ = 6.64 mm−1 T = 293 K 0.26 × 0.16 × 0.08 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2003 ▶) T min = 0.286, T max = 0.576 18043 measured reflections 2979 independent reflections 2491 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.086 S = 1.02 2979 reflections 196 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.23 e Å−3 Δρmin = −0.40 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶), PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813011884/wm2739sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813011884/wm2739Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H6BrN2)[ZnCl3(C5H5BrN2)]F(000) = 1000
Mr = 518.77Dx = 2.037 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4332 reflections
a = 9.4238 (4) Åθ = 2.2–24.1°
b = 13.6544 (6) ŵ = 6.64 mm1
c = 13.5679 (6) ÅT = 293 K
β = 104.349 (1)°Block, brown
V = 1691.40 (13) Å30.26 × 0.16 × 0.08 mm
Z = 4
Bruker APEX CCD area-detector diffractometer2979 independent reflections
Radiation source: fine-focus sealed tube2491 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
0.3° ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2003)h = −11→11
Tmin = 0.286, Tmax = 0.576k = −16→16
18043 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0386P)2 + 2.1357P] where P = (Fo2 + 2Fc2)/3
2979 reflections(Δ/σ)max < 0.001
196 parametersΔρmax = 1.23 e Å3
5 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.84827 (5)0.03227 (3)0.27004 (3)0.04549 (14)
N10.9443 (3)0.1421 (2)0.2061 (2)0.0424 (7)
N20.8519 (5)0.2686 (3)0.2841 (3)0.0656 (10)
H2A0.816 (5)0.226 (3)0.320 (3)0.079*
H2B0.843 (5)0.3311 (17)0.295 (4)0.079*
N30.1587 (4)0.1505 (2)0.4873 (3)0.0519 (8)
H3A0.104 (4)0.112 (3)0.513 (3)0.062*
N40.0611 (5)0.2750 (3)0.5635 (3)0.0642 (10)
H4A0.019 (5)0.234 (3)0.597 (3)0.077*
H4B0.056 (5)0.3368 (17)0.579 (4)0.077*
Cl10.81449 (12)0.07487 (8)0.42275 (8)0.0559 (3)
Cl20.63220 (11)0.00231 (7)0.15590 (7)0.0509 (2)
Cl31.00795 (13)−0.09311 (7)0.29181 (8)0.0589 (3)
C10.9311 (4)0.2387 (3)0.2208 (3)0.0461 (9)
C21.0012 (5)0.3065 (3)0.1699 (3)0.0588 (11)
H20.99330.37330.18100.071*
C31.0794 (5)0.2747 (3)0.1055 (3)0.0614 (12)
H31.12520.31910.07160.074*
C41.0908 (4)0.1746 (3)0.0904 (3)0.0521 (10)
C51.0238 (4)0.1116 (3)0.1420 (3)0.0461 (9)
H51.03330.04460.13260.055*
C60.1411 (4)0.2466 (3)0.5014 (3)0.0469 (9)
C70.2104 (5)0.3113 (3)0.4476 (3)0.0538 (10)
H70.20050.37860.45470.065*
C80.2913 (4)0.2767 (3)0.3856 (3)0.0552 (10)
H80.33660.31990.35010.066*
C90.3068 (4)0.1754 (3)0.3750 (3)0.0528 (10)
C100.2379 (5)0.1142 (3)0.4251 (3)0.0536 (10)
H100.24470.04690.41710.064*
Br11.19546 (6)0.12257 (4)0.00001 (4)0.07623 (18)
Br20.42174 (6)0.12277 (5)0.29263 (4)0.07970 (19)
U11U22U33U12U13U23
Zn10.0510 (3)0.0391 (2)0.0496 (3)−0.00250 (19)0.0187 (2)0.00095 (19)
N10.0439 (17)0.0370 (16)0.0489 (18)−0.0010 (13)0.0163 (14)0.0004 (13)
N20.086 (3)0.040 (2)0.079 (3)0.0100 (19)0.036 (2)−0.0003 (19)
N30.056 (2)0.0417 (19)0.061 (2)−0.0096 (15)0.0204 (17)−0.0032 (16)
N40.076 (3)0.055 (2)0.070 (2)−0.005 (2)0.033 (2)−0.006 (2)
Cl10.0633 (6)0.0595 (6)0.0492 (6)0.0011 (5)0.0218 (5)−0.0012 (5)
Cl20.0517 (6)0.0443 (5)0.0568 (6)−0.0039 (4)0.0137 (5)0.0020 (4)
Cl30.0694 (7)0.0455 (5)0.0646 (6)0.0112 (5)0.0219 (5)0.0063 (5)
C10.047 (2)0.039 (2)0.049 (2)−0.0024 (16)0.0062 (18)0.0020 (17)
C20.072 (3)0.042 (2)0.060 (3)−0.008 (2)0.011 (2)0.0033 (19)
C30.070 (3)0.054 (3)0.058 (3)−0.019 (2)0.012 (2)0.011 (2)
C40.048 (2)0.065 (3)0.044 (2)−0.0064 (19)0.0119 (18)0.0017 (19)
C50.047 (2)0.043 (2)0.049 (2)−0.0042 (17)0.0143 (18)0.0007 (17)
C60.043 (2)0.045 (2)0.050 (2)−0.0043 (17)0.0064 (18)−0.0033 (17)
C70.058 (3)0.040 (2)0.062 (3)−0.0053 (18)0.010 (2)0.0050 (19)
C80.051 (2)0.061 (3)0.055 (2)−0.008 (2)0.014 (2)0.008 (2)
C90.039 (2)0.068 (3)0.052 (2)0.0020 (19)0.0130 (18)−0.001 (2)
C100.052 (2)0.052 (2)0.057 (2)0.0014 (19)0.015 (2)−0.005 (2)
Br10.0751 (3)0.1016 (4)0.0625 (3)−0.0195 (3)0.0369 (3)−0.0081 (3)
Br20.0638 (3)0.1060 (4)0.0769 (4)0.0159 (3)0.0318 (3)0.0004 (3)
Zn1—N12.052 (3)C2—C31.347 (6)
Zn1—Cl12.2494 (11)C2—H20.9300
Zn1—Cl32.2499 (11)C3—C41.390 (6)
Zn1—Cl22.2691 (11)C3—H30.9300
N1—C11.344 (5)C4—C51.359 (5)
N1—C51.347 (5)C4—Br11.892 (4)
N2—C11.334 (5)C5—H50.9300
N2—H2A0.874 (19)C6—C71.406 (6)
N2—H2B0.873 (19)C7—C81.354 (6)
N3—C61.342 (5)C7—H70.9300
N3—C101.351 (5)C8—C91.401 (6)
N3—H3A0.868 (19)C8—H80.9300
N4—C61.320 (6)C9—C101.342 (6)
N4—H4A0.881 (19)C9—Br21.882 (4)
N4—H4B0.874 (19)C10—H100.9300
C1—C21.413 (6)
N1—Zn1—Cl1112.23 (9)C2—C3—C4119.2 (4)
N1—Zn1—Cl3105.12 (9)C2—C3—H3120.4
Cl1—Zn1—Cl3108.58 (4)C4—C3—H3120.4
N1—Zn1—Cl2104.99 (9)C5—C4—C3118.9 (4)
Cl1—Zn1—Cl2111.55 (4)C5—C4—Br1118.6 (3)
Cl3—Zn1—Cl2114.22 (4)C3—C4—Br1122.5 (3)
C1—N1—C5119.1 (3)N1—C5—C4122.7 (4)
C1—N1—Zn1126.0 (3)N1—C5—H5118.7
C5—N1—Zn1114.9 (2)C4—C5—H5118.7
C1—N2—H2A121 (3)N4—C6—N3119.3 (4)
C1—N2—H2B120 (3)N4—C6—C7123.9 (4)
H2A—N2—H2B119 (5)N3—C6—C7116.8 (4)
C6—N3—C10123.7 (4)C8—C7—C6120.6 (4)
C6—N3—H3A116 (3)C8—C7—H7119.7
C10—N3—H3A120 (3)C6—C7—H7119.7
C6—N4—H4A123 (3)C7—C8—C9119.8 (4)
C6—N4—H4B121 (3)C7—C8—H8120.1
H4A—N4—H4B115 (5)C9—C8—H8120.1
N2—C1—N1118.9 (4)C10—C9—C8119.2 (4)
N2—C1—C2121.2 (4)C10—C9—Br2119.0 (3)
N1—C1—C2120.0 (4)C8—C9—Br2121.9 (3)
C3—C2—C1120.1 (4)C9—C10—N3119.9 (4)
C3—C2—H2119.9C9—C10—H10120.0
C1—C2—H2119.9N3—C10—H10120.0
Cl1—Zn1—N1—C1−29.5 (3)C1—N1—C5—C4−0.6 (6)
Cl3—Zn1—N1—C1−147.3 (3)Zn1—N1—C5—C4177.7 (3)
Cl2—Zn1—N1—C191.9 (3)C3—C4—C5—N11.2 (6)
Cl1—Zn1—N1—C5152.4 (2)Br1—C4—C5—N1−178.5 (3)
Cl3—Zn1—N1—C534.5 (3)C10—N3—C6—N4179.7 (4)
Cl2—Zn1—N1—C5−86.3 (3)C10—N3—C6—C70.0 (6)
C5—N1—C1—N2179.8 (4)N4—C6—C7—C8179.7 (4)
Zn1—N1—C1—N21.7 (5)N3—C6—C7—C8−0.5 (6)
C5—N1—C1—C2−0.5 (5)C6—C7—C8—C9−0.2 (6)
Zn1—N1—C1—C2−178.6 (3)C7—C8—C9—C101.5 (6)
N2—C1—C2—C3−179.3 (4)C7—C8—C9—Br2−178.4 (3)
N1—C1—C2—C31.0 (6)C8—C9—C10—N3−2.0 (6)
C1—C2—C3—C4−0.4 (7)Br2—C9—C10—N3177.8 (3)
C2—C3—C4—C5−0.7 (6)C6—N3—C10—C91.3 (6)
C2—C3—C4—Br1179.0 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···Cl10.87 (2)2.50 (3)3.315 (4)156 (4)
N2—H2B···Cl2i0.87 (2)2.43 (2)3.288 (4)169 (5)
N3—H3A···Cl1ii0.87 (2)2.75 (4)3.309 (4)124 (3)
N3—H3A···Cl1iii0.87 (2)2.74 (4)3.297 (4)123 (4)
N4—H4A···Cl3iii0.88 (2)2.49 (3)3.328 (4)159 (4)
N4—H4B···Cl2iv0.87 (2)2.46 (3)3.295 (4)160 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯Cl10.87 (2)2.50 (3)3.315 (4)156 (4)
N2—H2B⋯Cl2i 0.87 (2)2.43 (2)3.288 (4)169 (5)
N3—H3A⋯Cl1ii 0.87 (2)2.75 (4)3.309 (4)124 (3)
N3—H3A⋯Cl1iii 0.87 (2)2.74 (4)3.297 (4)123 (4)
N4—H4A⋯Cl3iii 0.88 (2)2.49 (3)3.328 (4)159 (4)
N4—H4B⋯Cl2iv 0.87 (2)2.46 (3)3.295 (4)160 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antibacterial activity of oxazolidinones containing pyridine substituted with heteroaromatic ring.

Authors:  Yeong Woo Jo; Weon Bin Im; Jae Keol Rhee; Mi Ja Shim; Won Bae Kim; Eung Chil Choi
Journal:  Bioorg Med Chem       Date:  2004-11-15       Impact factor: 3.641

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.