| Literature DB >> 23794884 |
Abstract
Species of the genus Placospongia are common within the tropical Indo-West Pacific, demonstrating a wide variety of colors and either branching or encrusting growth forms. A revision of Indo-West Pacific Placospongia was undertaken based on a redescription of the holotypes of species of Placospongia from the Indian Ocean and Western Pacific and an examination of an additional 103 specimens of Placospongia ssp. collected from Indonesia (including Vosmaer and Vernhout 1902 material), Seychelles, India, Singapore and Micronesia. One mitochondrial (COI) and one nuclear (ITS) marker were subsequently used to differentiate species. All Placospongia species are characterized by selenasters and tylostyles in two size classes. The combination of microsclere diversity and morphology as well as megasclere size were shown to be informative morphometric characters, supported by molecular evidence. Live coloration and growth form is shown to be unreliable for diagnoses. The study of holotypes found that Placospongia mixta is a valid species and that two genus transfers are necessary: Geodinella anthosigma is a Placospongia and Placospongia labyrinthica is a Geodia. A new species is also described from an anchialine pool in Indonesia, Placospongia santodomingoae sp. n.; bringing the total fauna of Placospongia species in the Indo-West Pacific to five: Placospongia anthosigma, Placospongia carinata, Placospongia mixta, Placospongia melobesioides, and Placospongia santodomingoae sp. n. An identification key is given. Two additional species, possibly morphologically cryptic, have been identified by molecular markers.Entities:
Keywords: COI; ITS; Indonesia; Sponge; anchialine pool; coral reef; mangrove; marine lake
Year: 2013 PMID: 23794884 PMCID: PMC3689107 DOI: 10.3897/zookeys.298.1913
Source DB: PubMed Journal: Zookeys ISSN: 1313-2970 Impact factor: 1.546
Figure 1.In situ underwater images of spp. in Indonesia, displaying natural variation in color and growth form of live specimens. A (by L.E. Becking) B (by L.E. Becking) C (by L.E. Becking) D (by N.J. de Voogd).
Figure 2.Gradation of external coloration in preserved specimens. A RMNH POR. 4492 B RMNH POR. 4113 C RMNH POR. 4482 D RMNH POR. 4483 E RMNH POR. 3979 F RMNH POR. 4114.
Measurements of spicules of , , , and sp. n. Sample location, growth form, color and spicule measurements provided per specimen. Spicule dimensions are based on 25 measurements and given in the text as minimum-average-maximum. Spheraster measurements in based on less than ten measurements, due to low of abundance in specimens.
| R122b-86g-BK1390 (holotype) | 500- | 10- | 10- | 140- | 5- | 8- | 80- | 60- | 23- | 8- | 8- | 2.5 | |||
| RMNH POR. 4482 | branching | orange | 660- | 10- | 10- | 180- | 3- | 8- | 65- | 50- | 15- | 10- | 8- | 2.5 | |
| RMNH POR. 4483 | encrusting | light brown | 610- | 10- | 13- | 190- | 5- | 5- | 60- | 60- | 20- | 10- | 8- | 2.5 | |
| RMNH POR. 4484 | encrusting | cream | 560- | 8- | 10- | 175- | 3- | 5- | 50- | 35- | 25- | 8- | 10- | 2.5 | |
| RMNH POR. 4485 | branching | dark brown | 550- | 10- | 13- | 210- | 3- | 5- | 28- | 38- | 20- | 5- | 5- | <2.5 | |
| RMNH POR. 744 | encrusting | purple | 450- | 8- | 10- | 195- | 5- | 5- | 60- | 50- | 25- | 10-12.918 | 8- | <2.5 | |
| RMNH POR. 754 | encrusting | white | 540- | 10- | 13- | 280- | 5- | 5- | 55- | 45- | 25- | 8- | 8- | 2.5 | |
| RMNH POR. 755 | encrusting | cream | 560- | 8- | 10- | 250- | 5- | 5- | 55- | 38- | 30- | 8- | 8- | 2.5 | |
| ZMA Por. 10727 | encrusting | - | 620- | 8- | 13- | 240- | 3- | 3- | 50- | 35- | 25- | 8- | 8- | <2.5 | |
| ZMA Por. 9189 | branching | - | 550- | 10- | 13- | 210- | 5- | 5- | 63- | 50- | 30- | 8- | 8- | 2.5 | |
| BMNH52.4.1.14 (holotype) | branching | dark brown | 670- | 10- | 10- | 205- | 5- | 5- | 58- | 45- | 15- | ||||
| RMNH POR. 4495 | encrusting | dark brown | 480- | 5- | 8- | 190- | 3- | 3- | 45- | 30- | |||||
| RMNH POR. 4496 | branching | dark brown | 580- | 8- | 10- | 230- | 5- | 8- | 45- | 35- | |||||
| RMNH POR. 4497 | branching | dark brown | 620- | 10- | 13- | 250- | 5- | 5- | 63- | 45- | |||||
| RMNH POR. 3935 | encrusting | dark brown | 460- | 10- | 10- | 210- | 3- | 3- | 45- | 38- | 15-20 | ||||
| RMNH POR. 3166 | encrusting | dark brown | 460- | 8- | 10- | 200- | 3- | 5- | 60- | 50- | |||||
| RMNH POR. 3976 | branching | dark brown | 600- | 10- | 13- | 190- | 5- | 5- | 48- | 48- | |||||
| RMNH POR. 3977 | branching | brown | 510- | 10- | 13- | 200- | 5- | 8- | 58- | 40- | |||||
| RMNH POR. 758 | branching | purple | 630- | 10- | 13- | 210- | 5- | 8- | 50- | 35- | 15 | ||||
| RMNH POR. 757 | branching | white | 550- | 10- | 13- | 260- | 8- | 10- | 55- | 43- | |||||
| RMNH POR. 2464 | branching | - | 710- | 12.5- | 13- | 240- | 5- | 5- | 67.5- | 60- | |||||
| ZMA Por. 10459 | branching | brown | 520- | 7.5- | 10- | 310- | 5- | 5- | 62.5- | 50- | |||||
| ZMB3204 (holotype) | encrusting | - | 355- | 8- | 8- | 165- | 3- | 3- | 55- | 43- | 20- | 15- | 3- | 5- | <2.5 |
| RMNH POR. 4112 | encrusting | red | 480- | 10- | 13- | 210- | 5- | 5- | 50- | 38- | 18- | 18- | 5- | 5- | <2.5 |
| RMNH POR. 4113 | encrusting | cream | 550- | 10- | 13- | 160- | 5- | 5- | 62.5- | 45- | 20- | 20- | 5- | 5- | 2,5 |
| RMNH POR. 742 | branching | red | 550- | 10- | 10- | 120- | 3- | 3- | 50- | 33- | 22- | 15- | 2- | 5- | <2.5 |
| RMNH POR. 4489 | encrusting | cream | 630- | 10- | 13- | 175- | 3- | 2- | 60- | 43- | 18- | 20- | 8- | 8- | <2.5 |
| RMNH POR. 4490 | encrusting | cream | 510- | 8-13.120 | 13- | 150- | 3- | 2- | 55- | 40- | 13- | 15- | 5- | 8- | <2.5 |
| RMNH POR. 4491 | encrusting | brown | 780- | 10- | 15- | 240- | 5- | 5- | 60- | 48- | 18- | 20- | 5- | 5- | 2,5 |
| RMNH POR. 4492 | encrusting | white | 610- | 10- | 13- | 260- | 8- | 8- | 58- | 45- | 15- | 18- | 10- | 5- | <2.5 |
| RMNH POR. 3158 | encrusting | cream | 550- | 13- | 13- | 130- | 5- | 8- | 65- | 50- | 23- | 23- | 5- | 5- | <2.5 |
| RMNH POR. 745 | encrusting | red | 760- | 13- | 10- | 250- | 3- | 3- | 45- | 45- | 20- | 20- | 3- | 5- | <2.5 |
| RMNH POR. 4493 | encrusting | brown | 460- | 10- | 13- | 220- | 8- | 10- | 73- | 53- | 20- | 18- | 15- | 8- | <2.5 |
| RMNH POR. 4494 | encrusting | brown | 540- | 10- | 10- | 180- | 3- | 4- | 50- | 35- | 15- | 23- | 8- | 8- | <2.5 |
| RMNH POR. 4486 (holotype) | branching | brown | 430- | 13- | 13- | 240- | 5- | 5- | 80- | 60- | 8- | 2.5- | |||
| RMNH POR. 4487 | branching | orange | 530- | 13- | 15- | 220- | 5- | 8- | 63- | 60- | 5- | 2.5- | |||
| RMNH POR. 4488 | branching | orange | 480- | 15- | 18- | 190- | 5- | 8- | 80- | 58- | 8- | 2.5- | |||
Figure 11.Bayesian/maximum likelihood phylograms of genotypes of the internal transcribed spacer region of nuclear ribosomal operons (ITS) of Indo-Pacific spp. found in this study and related species from the same genus collected from GenBank. Clades C3, C4, C5, C6 & C9 refer to the clades presented in the study by Nichols and Barnes (2005). Taxon labels are organized as follows: Specimen - Locality - Genbank code or RMNH POR. Number. Only posterior probabilities of >90 and maximum likelihood values of >70 indicated. Scale bar indicate substitutions/site.
Figure 3.holotype (NSMT-Po R288) A type specimen (image taken from website database of the Museum of Nature and Science, Tokyo, Japan) B selenaster C large tylostyle (head and blunt end) D spheraster E spirasters referred to as ‘anthosigma’ by Tanita & Hoshino (1989).
Figure 4.slide of holotype (BMNH, R1228, 86g, Bk.1390; R1275, PE01, Bk1390). A large tylostyle (scale=200 μ m) B small tylostyle (scale=50 μ m) C selenaster (scale=50 μ m) D close up of large tylostyle (scale=50 μ m) E close up of small tylostyle F streptasters (scale=50 μ m) G acanthose microrhabds H original slide of thick section of holotype I original slide of spicules of holotype.
Figure 5.(RMNH POR. 4483). A selenaster B large tylostyle (head and blunt end) C small tylostyle (head and hastate end) D streptasters, E. acanthose microrhabds.
Location details of reviewed specimens of .
| RMNH POR. 744 | #1500 | Indonesia | Moluccas | W of Aru | Kur | benthic hard | 20-40 | 6.xii.1899 | Siboga expedition | |||
| RMNH POR. 754 | #1458 | Philippines | Sulu Sea | Ubian islands | anchorage off North Ubian | lithothamnion | 23 | 28.vi.1899 | Siboga expedition | |||
| RMNH POR. 755 | #1848 | Indonesia | West Papua | Raja Ampat | Misool | sand, stones | 32 | 20.viii.1899 | Siboga expedition | |||
| RMNH POR. 3943 | #KKB/mol716 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3944 | #KKB/mol754 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3945 | #KKB/mol780 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3946 | #KKB/mol810 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3947 | #KKB/mol814 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3948 | #KKB/mol825 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3949 | #KKB/mol713 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3950 | #KKB/mol1068 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3951 | #MA/mol700 | Indonesia | East Kalimantan | Berau | Maratua | Haji Buang lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3952 | #MA/mol975 | Indonesia | East Kalimantan | Berau | Maratua | Haji Buang lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3953 | #MA/mol947 | Indonesia | East Kalimantan | Berau | Maratua | Haji Buang lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3954 | #MA/mol1055 | Indonesia | East Kalimantan | Berau | Maratua | Haji Buang lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3955 | #MA/mol1012 | Indonesia | East Kalimantan | Berau | Maratua | Haji Buang lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3956 | #MA/mol1001 | Indonesia | East Kalimantan | Berau | Maratua | Haji Buang lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3957 | #MA/mol1009 | Indonesia | East Kalimantan | Berau | Maratua | Haji Buang lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3958 | #MA/mol1500 | Indonesia | East Kalimantan | Berau | Maratua | Haji Buang lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 4482 | #MA/mol1061 | Indonesia | East Kalimantan | Berau | Maratua | Haji Buang lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 4483 | #MA/LE172 | Indonesia | East Kalimantan | Berau | Maratua | Haji Buang lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 4484 | #KKB/mol110 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 4485 | #KKB/mol763 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| ZMA Por. 1818 | Indonesia | Maluku | Banda islands | Banda anchorage | reef | 9-45 | 22.xi.1899 | Siboga expedition | ||||
| ZMA Por. 9578 | Singapore | Pulau Salu | reef | 2 | 22.xii.1977 | H. Moll | ||||||
| ZMA Por. 8813 | Indonesia | Nusa Tenggara | Komodo | NE cape | reef | 30 | 19.ix.1984 | R.W.M. van Soest (Snellius II Expedition) | ||||
| ZMA Por. 9189 | India | Laccadive Islands | Agatti | 20-25 | 1987 | National Institute of Oceanography | ||||||
| ZMA Por. 10481 | Seychelles | Mahé | Mahé | SE coast, near Pointe Cocos | reef | 35-45 | 24.xii.1992 | R.W.M. van Soest | ||||
| ZMA Por. 10727 | Seychelles | Mahé | Mahé | NE Point | reef | 1 | 14.xii.1992 | R.W.M. van Soest | ||||
| ZMA Por. 11367 | Seychelles | Mahé | N of Aride | reef | 40 | 19.xii.1992 | R.W.M. van Soest | |||||
| ZMA Por. 16584 | Seychelles | Mahé | Mahé | SW coast, Baie Lazare, Anse Gaulettes | reef | 1-4 | 6.xii.1992 | R.W.M. van Soest | ||||
| ZMA Por. 20735 | Seychelles | Mahé | reef | 1992 | R.W.M. van Soest | |||||||
Figure 9.Distribution of spp. in the Indo-West Pacific. Location of symbols is approximate.
Figure 6.holotype (BMNH 52.4.1.14). A Holotype with two labels B selenaster C large tylostyle (head and blunt end) D small tylostyle (head and hastate end) E spheraster F spherules.
Location details of reviewed specimens of .
| RMNH POR. 761 | #1033 | Indonesia | S of Moluccas | sand & rock | 45 | 1899 | Siboga expedition | |||||
| RMNH POR. 756 | #660 | Indonesia | Nusa Tenggara | N of Sumbawa | sand & rock | 36 | 14.ii.1900 | Siboga expedition | ||||
| RMNH POR. 757 | #1849 | Indonesia | Moluccas | SE of Misool | Banda islands | sand & rock | 32 | 1899 | Siboga expedition | |||
| RMNH POR. 758 | #1847 | Indonesia | Moluccas | SE of Misool | Banda islands | sand & rock | 32 | 1899 | Siboga expedition | |||
| RMNH POR. 759 | #1853 | Indonesia | Moluccas | SE of Misool | Banda islands | sand & rock | 32 | 1899 | Siboga expedition | |||
| RMNH POR. 760 | #1851 | Indonesia | Moluccas | SE of Misool | Banda islands | sand & rock | 32 | 1899 | Siboga expedition | |||
| RMNH POR. 2463 | #Sin05/270306/025 | Singapore | Semaku | Pulau Semakau NW side | reef | 10-12 | iii.2006 | N.J. de Voogd | ||||
| RMNH POR. 2464 | #Sin05/270306/026 | Singapore | Semaku | Pulau Semakau NW side | reef | 10-12 | iii.2006 | N.J. de Voogd | ||||
| RMNH POR. 3154 | #LEMD05/30 | Indonesia | North Sulawesi | Bunaken | Pangalisang | reef | 9 | 24.ix.2006 | L.E.Becking | |||
| RMNH POR. 3166 | #LEMD13/69 | Indonesia | North Sulawesi | Bunaken | Pangalisang | reef | 19 | 28.ix.2006 | L.E.Becking | |||
| RMNH POR. 3177 | #LEMD22/87 | Indonesia | North Sulawesi | Bunaken | Likuan2 | reef | 21 | 13.x.2006 | L.E.Becking | |||
| RMNH POR. 3932 | #KKB/mol866 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3933 | #KKB/mol766 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3934 | #KKB/mol767 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3935 | #BER113/mol689 | Indonesia | East Kalimantan | Berau | Maratua | NE Maratua | reef | 5-10 | 15.viii.2008 | N.J. de Voogd | ||
| RMNH POR. 3937 | #BER107/mol604 | Indonesia | East Kalimantan | Berau | Sangalaki | E Sangalaki | reef | 5-10 | 15.viii.2008 | L.E.Becking | ||
| RMNH POR. 3938 | #BER107/mol608 | Indonesia | East Kalimantan | Berau | Sangalaki | E Sangalaki | reef | 5-10 | 15.viii.2008 | L.E.Becking | ||
| RMNH POR. 3939 | #BER108/mol601 | Indonesia | East Kalimantan | Berau | Sangalaki | W Sangalaki | reef | 5-10 | 15.viii.2008 | L.E.Becking | ||
| RMNH POR. 3940 | #P-YAP1 | Micronesia | Yap | Yap | reefflat in front of mangrove | 1-3 | 28.viii.2010 | L.E.Becking | ||||
| RMNH POR. 3941 | #P-YAP2 | Micronesia | Yap | Yap | reefflat in front of mangrove | 1-3 | 28.viii.2010 | L.E.Becking | ||||
| RMNH POR. 3942 | #P-YAP3 | Micronesia | Yap | Yap | reefflat in front of mangrove | 1-3 | 28.viii.2010 | L.E.Becking | ||||
| RMNH POR. 3976 | #PM-TER02 | Indonesia | Moluccas | Ternate | reef | 5-10 | xi.2009 | N.J. de Voogd | ||||
| RMNH POR. 3977 | #PM-TER08 | Indonesia | Moluccas | Ternate | reef | 5-10 | xi.2009 | N.J. de Voogd | ||||
| RMNH POR. 3978 | #PM-TER12 | Indonesia | Moluccas | Ternate | reef | 5-10 | xi.2009 | N.J. de Voogd | ||||
| RMNH POR. 4114 | #KKB/mol795 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 4495 | #KKB/mol1075 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 4496 | #KKB/mol776 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 4497 | #BER107/mol603 | Indonesia | East Kalimantan | Berau | Sangalaki | E Sangalaki | reef | 5-10 | 15.viii.2008 | L.E.Becking | ||
| ZMA Por. 10459 | Seychelles | Mahé | Mahé | NE coast, North East Point | reef | 5 | 8.xii.1992 | R.W.M. van Soest | ||||
| ZMA Por. 10496 | Seychelles | Mahé | Mahé | North East Point | reef | 14.xii.1992 | R.W.M. van Soest | |||||
| ZMA Por. 13097 | Indonesia | South Sulawesi | Spermonde archipelago | Samalona | reef | 5-30 | 27.iv.1997 | N.J. de Voogd | ||||
Figure 7.holotype (ZMB 3204). A selenaster B large tylostyle (head and blunt end) C small tylostyle (head and hastate end) D spheraster E streptasters F microacanthose microrhabds.
Location details of reviewed specimens of .
| RMNH POR. 753 | #311 | Indonesia | West Papua | E. of Misool | sand & rock | 32 | 20.viii.1899 | Siboga expedition | ||||
| RMNH POR. 751 | #1857 | Indonesia | West Papua | E. of Misool | sand & rock | 32 | 20.viii.1899 | Siboga expedition | ||||
| RMNH POR. 745 | #577 | Indonesia | South Sulawesi | N. of Kabia | Saleyer anchorage | sand & rock | 36 | 20.viii.1899 | Siboga expedition | |||
| RMNH POR. 742 | #163a | Indonesia | Moluccas | Aru | Pearl Banks, anchorage off Pulu Jedan | reef | 13 | 23.xii.1899 | Siboga expedition | |||
| RMNH POR. 3148 | #LEMD04/21 | Indonesia | North Sulawesi | Bunaken | Likuan 2 | reef | 15 | 24.ix.2006 | L.E. Becking | |||
| RMNH POR. 3155 | #LEMD06/32 | Indonesia | North Sulawesi | Lembeh Strait | Nudi Reed Reed | reef | 21 | 25.ix.2006 | L.E. Becking | |||
| RMNH POR. 3157 | #LEMD08/39 | Indonesia | North Sulawesi | Lembeh Strait | Nudi Fols | reef | 6 | 25.ix.2006 | L.E. Becking | |||
| RMNH POR. 3158 | #LEMD08/42 | Indonesia | North Sulawesi | Lembeh Strait | Nudi Fols | reef | 8 | 25.ix.2006 | L.E. Becking | |||
| RMNH POR. 3163 | #LEMD11/52 | Indonesia | North Sulawesi | Bunaken | 0.5-1km W. of Park administration office | reef | 8 | 27.ix.2006 | L.E. Becking | |||
| RMNH POR. 3959 | #KKB/mol827 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3960 | #KKB/mol829 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3961 | #KKB/mol851 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 3962 | #BER111/mol1203 | Indonesia | East Kalimantan | Berau | Kakaban | SW Kakaban | reef | 10 | 17.viii.2008 | N.J. de Voogd | ||
| RMNH POR. 3963 | #BER111/1209 | Indonesia | East Kalimantan | Berau | Kakaban | SW Kakaban | reef | 10 | 17.viii.2008 | N.J. de Voogd | ||
| RMNH POR. 3964 | #BER111/1213 | Indonesia | East Kalimantan | Berau | Kakaban | SW Kakaban | reef | 10 | 17.viii.2008 | N.J. de Voogd | ||
| RMNH POR. 3965 | #BER111/mol1219 | Indonesia | East Kalimantan | Berau | Kakaban | SW Kakaban | reef | 10 | 17.viii.2008 | N.J. de Voogd | ||
| RMNH POR. 3966 | #RAJ23/mol195 | Indonesia | West Papua | Raja Ampat | Gam | Ctenophore lake | marine lake | 0-2 | xi.2007 | L.E. Becking | ||
| RMNH POR. 3967 | #RAJ23/mol187 | Indonesia | West Papua | Raja Ampat | Gam | Ctenophore lake | marine lake | 0-2 | xi.2007 | L.E. Becking | ||
| RMNH POR. 3968 | #RAJ64/mol429 | Indonesia | West Papua | Raja Ampat | Waigeo | Teluk Mayabilit | reef | 10 | xii.2007 | L.E. Becking | ||
| RMNH POR. 3969 | #RAJ64/mol430 | Indonesia | West Papua | Raja Ampat | Waigeo | Teluk Mayabilit | reef | 10 | xii.2007 | L.E. Becking | ||
| RMNH POR. 3970 | #RAJ64/mol431 | Indonesia | West Papua | Raja Ampat | Waigeo | Teluk Mayabilit | reef | 10 | xii.2007 | L.E. Becking | ||
| RMNH POR. 3971 | #RAJ64/mol432 | Indonesia | West Papua | Raja Ampat | Waigeo | Teluk Mayabilit | reef | 10 | xii.2007 | L.E. Becking | ||
| RMNH POR. 3972 | #RAJ64/mol433 | Indonesia | West Papua | Raja Ampat | Waigeo | Teluk Mayabilit | reef | 10 | xii.2007 | L.E. Becking | ||
| RMNH POR. 3973 | #RAJ39/mol249 | Indonesia | West Papua | Raja Ampat | Fam | rocky shore | 0-1 | xi.2007 | L.E. Becking | |||
| RMNH POR. 3974 | #RAJ39/mol250 | Indonesia | West Papua | Raja Ampat | Fam | rocky shore | 0-1 | xi.2007 | L.E. Becking | |||
| RMNH POR. 3975 | #RAJ39/mol254 | Indonesia | West Papua | Raja Ampat | Fam | rocky shore | 0-1 | xi.2007 | L.E. Becking | |||
| RMNH POR. 3979 | #KKB/mol 779 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 4112 | #P-TER11 | Indonesia | Moluccas | Ternate | reef | xi.2009 | N.J. de Voogd | |||||
| RMNH POR. 4113 | #P-TER22 | Indonesia | Moluccas | Ternate | reef | xi.2009 | N.J. de Voogd | |||||
| RMNH POR. 4489 | #KKB/mol721 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 4490 | #KKB/mol830 | Indonesia | East Kalimantan | Berau | Kakaban | Kakaban lake | marine lake | 0-2 | ix.2008 | L.E.Becking | ||
| RMNH POR. 4491 | #BER109/mol629 | Indonesia | East Kalimantan | Berau | lighthouse near Berau river | reef | 10 | 16.viii.2008 | L.E.Becking | |||
| RMNH POR. 4492 | #BER111/mol666 | Indonesia | East Kalimantan | Berau | Kakaban | SW Kakaban | reef | 10 | 17.viii.2008 | N.J. de Voogd | ||
| RMNH POR. 4493 | #RAJ64/mol428) | Indonesia | West Papua | Raja Ampat | Waigeo | Teluk Mayabilit | reef | 10 | xii.2007 | L.E. Becking | ||
| RMNH POR. 4494 | #RAJ23/mol199 | Indonesia | West Papua | Raja Ampat | Gam | Ctenophore lake | marine lake | 0-2 | xi.2007 | L.E. Becking | ||
| ZMA Por. 896 | Indonesia | South Sulawesi | SW Salayer | reef N of Pulau Bahuluang | reef | 10-45 | 30.ix.1984 | R.W.M. van Soest (Snellius Expedition II) | ||||
| ZMA Por. 10495 | Seychelles | Mahé | Mahé | SE coast near Pointe Cocos | 35-45 | 24.xii.1992 | R.W.M. van Soest | |||||
Figure 10.Bayesian/maximum likelihood phylograms of Cytochrome Oxidase I (COI) sequences from Indo-Pacific spp. See Table 5 for GenBank accession numbers. Only posterior probabilities of >90 and maximum likelihood values of >70 indicated. Scale bar indicates substitutions/site.
The number of base differences per site from averaging over all Cytochrome Oxidase I (COI) sequence pairs between spp. groups are shown (uncorrected p-distances). Standard error estimate (s) are shown above the diagonal in italic. The analysis involved 30 nucleotide sequences. There was no within-group difference. aff. decumbens was used as outgroup in the phylogenetic inference (see Fig. 10).
| * | ||||
| 2.1 | ||||
| 1.9 | 0.5 | * | ||
| 12.2 | 11.5 | 11.7 | * |
The number of base differences per site from averaging over all internal transcribed spacer (ITS) sequence pairs between spp. groups are shown (uncorrected p-distances). Standard error estimate (s) are shown above the diagonal. All positions with less than 5% site coverage were eliminated. Black cursive along the diagonal indicates within-group uncorrected p- distance. The analysis involved 73 nucleotide sequences. C9, C5, C6, C4, C3 refer to five clades in the Indo-West Pacific as presented in Fig. 11.
| 13.8 | |||||||||
| 14.7 | 6.3 | ||||||||
| 13.2 | 5.8 | 0.6 | |||||||
| C9 | 0.9 | 13.5 | 14.6 | 13.6 | |||||
| C5 | 13.5 | 0.9 | 6.6 | 6.1 | 12.9 | ||||
| C6 | 14 | 2.2 | 6.4 | 6.1 | 13.2 | 2.2 | |||
| C4 | 14.8 | 6.3 | 0.5 | 0.9 | 14.3 | 6.3 | 6 | ||
| C3 | 15.2 | 7.1 | 6.1 | 5.9 | 14.5 | 6.9 | 6.3 | 5.6 |
Figure 8.sp. n. (RMNH POR. 4486). A ethanol preserved specimen B selenaster C large tylostyle (head and blunt end) D small tylostyle (head and hastate end) E microrhabds.
Specimens of Placospongia studied for DNA analysis. Genbank accession numbers provided for sequences of Cytochrome Oxidase I (COI) and internal transcribed spacer region (ITS).
| RMNH POR. 4482 | |||
| RMNH POR. 4483 | |||
| RMNH POR. 4484 | |||
| RMNH POR. 4485 | |||
| ZMA Por. 10727 | - | ||
| ZMA Por. 11367 | - | ||
| RMNH POR. 2464 | - | ||
| RMNH POR. 3942 | |||
| RMNH POR. 3976 | - | ||
| RMNH POR. 4114 | |||
| RMNH POR. 4495 | |||
| RMNH POR. 4496 | |||
| RMNH POR. 4497 | |||
| RMNH POR.3166 | |||
| ZMA Por. 10459 | |||
| RMNH POR. 3158 | |||
| RMNH POR. 3960 | |||
| RMNH POR. 3979 | - | ||
| RMNH POR. 4113 | |||
| RMNH POR. 4489 | - | ||
| RMNH POR. 4490 | |||
| RMNH POR. 4491 | |||
| RMNH POR. 4492 | |||
| RMNH POR. 4493 | |||
| RMNH POR. 4494 | |||
| RMNH POR. 4486 | |||
| RMNH POR. 4487 | |||
| RMNH POR. 4488 |
| 1 | Streptasters absent | 2 |
| – | Streptasters present | 3 |
| 2 | Spherules present | |
| – | Spherules absent | 4 |
| 3 | Streptasters have rays with birfurcating ends | |
| – | Streptasters have rays with hastate ends, spherasters present | |
| 4 | Spherasters present, microrhabds with short spines spirally places on shaft | |
| – | Spherasters absent, acanthose microrhabds present |