Literature DB >> 23793749

Mechanistic insights into mutually exclusive splicing in dynamin 1.

Mikita Suyama1.   

Abstract

SUMMARY: Mutually exclusive splicing is a strictly regulated pattern of alternative splicing. A specific group of mutually exclusive splicing events has been shown to be regulated by the formation of specific RNA secondary structures. This type of regulation has been shown to exist only in arthropods. The present study involved a detailed sequence analysis of human gene structures that undergo mutually exclusive splicing, which showed that this type of regulation may also occur in dynamin 1 in mammals. A phylogenetic analysis revealed that the dynamin 1 orthologs in invertebrates did not share the same sequence features, which suggests that the regulatory mechanism has independently evolved in the mammalian lineage. Therefore, the emergence of this elaborate mechanism for mutually exclusive splicing may be attributable to mechanistic convergence.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23793749     DOI: 10.1093/bioinformatics/btt368

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  10 in total

1.  Role and convergent evolution of competing RNA secondary structures in mutually exclusive splicing.

Authors:  Yuan Yue; Shouqing Hou; Xiu Wang; Leilei Zhan; Guozheng Cao; Guoli Li; Yang Shi; Peng Zhang; Weiling Hong; Hao Lin; Baoping Liu; Feng Shi; Yun Yang; Yongfeng Jin
Journal:  RNA Biol       Date:  2017-02-17       Impact factor: 4.652

Review 2.  The determinants of alternative RNA splicing in human cells.

Authors:  Tatsiana V Ramanouskaya; Vasily V Grinev
Journal:  Mol Genet Genomics       Date:  2017-07-13       Impact factor: 3.291

3.  Kassiopeia: a database and web application for the analysis of mutually exclusive exomes of eukaryotes.

Authors:  Klas Hatje; Martin Kollmar
Journal:  BMC Genomics       Date:  2014-02-10       Impact factor: 3.969

4.  RNA secondary structures in Dscam1 mutually exclusive splicing: unique evolutionary signature from the midge.

Authors:  Weiling Hong; Yang Shi; Bingbing Xu; Yongfeng Jin
Journal:  RNA       Date:  2020-05-29       Impact factor: 4.942

5.  Competing RNA pairings in complex alternative splicing of a 3' variable region.

Authors:  Huawei Pan; Yang Shi; Shuo Chen; Yun Yang; Yuan Yue; Leilei Zhan; Lanzhi Dai; Haiyang Dong; Weiling Hong; Feng Shi; Yongfeng Jin
Journal:  RNA       Date:  2018-07-31       Impact factor: 4.942

6.  Conserved long-range base pairings are associated with pre-mRNA processing of human genes.

Authors:  Svetlana Kalmykova; Marina Kalinina; Stepan Denisov; Alexey Mironov; Dmitry Skvortsov; Roderic Guigó; Dmitri Pervouchine
Journal:  Nat Commun       Date:  2021-04-16       Impact factor: 14.919

7.  Hidden RNA pairings counteract the "first-come, first-served" splicing principle to drive stochastic choice in Dscam1 splice variants.

Authors:  Haiyang Dong; Bingbing Xu; Pengjuan Guo; Jian Zhang; Xi Yang; Lei Li; Ying Fu; Jilong Shi; Shixin Zhang; Yanda Zhu; Yang Shi; Fengyan Zhou; Lina Bian; Wendong You; Feng Shi; Xiaofeng Yang; Jianhua Huang; Haihuai He; Yongfeng Jin
Journal:  Sci Adv       Date:  2022-01-26       Impact factor: 14.136

8.  Tandem Exon Duplications Expanding the Alternative Splicing Repertoire.

Authors:  T M Ivanov; D D Pervouchine
Journal:  Acta Naturae       Date:  2022 Jan-Mar       Impact factor: 2.204

9.  Trans-splicing facilitated by RNA pairing greatly expands sDscam isoform diversity but not homophilic binding specificity.

Authors:  Shouqing Hou; Guo Li; Bingbing Xu; Haiyang Dong; Shixin Zhang; Ying Fu; Jilong Shi; Lei Li; Jiayan Fu; Feng Shi; Yijun Meng; Yongfeng Jin
Journal:  Sci Adv       Date:  2022-07-06       Impact factor: 14.957

10.  The landscape of human mutually exclusive splicing.

Authors:  Klas Hatje; Raza-Ur Rahman; Ramon O Vidal; Dominic Simm; Björn Hammesfahr; Vikas Bansal; Ashish Rajput; Michel Edwar Mickael; Ting Sun; Stefan Bonn; Martin Kollmar
Journal:  Mol Syst Biol       Date:  2017-12-14       Impact factor: 11.429

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.