Literature DB >> 23790324

The faster-X effect: integrating theory and data.

Richard P Meisel1, Tim Connallon.   

Abstract

Population genetics theory predicts that X (or Z) chromosomes could play disproportionate roles in speciation and evolutionary divergence, and recent genome-wide analyses have identified situations in which X or Z-linked divergence exceeds that on the autosomes (the so-called 'faster-X effect'). Here, we summarize the current state of both the theory and data surrounding the study of faster-X evolution. Our survey indicates that the faster-X effect is pervasive across a taxonomically diverse array of evolutionary lineages. These patterns could be informative of the dominance or recessivity of beneficial mutations and the nature of genetic variation acted upon by natural selection. We also identify several aspects of disagreement between these empirical results and the population genetic models used to interpret them. However, there are clearly delineated aspects of the problem for which additional modeling and collection of genomic data will address these discrepancies and provide novel insights into the population genetics of adaptation.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  X chromosome; dominance; genetics of adaptation; natural selection

Mesh:

Year:  2013        PMID: 23790324      PMCID: PMC3755111          DOI: 10.1016/j.tig.2013.05.009

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  75 in total

1.  Weak selection revealed by the whole-genome comparison of the X chromosome and autosomes of human and chimpanzee.

Authors:  Jian Lu; Chung-I Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-23       Impact factor: 11.205

2.  Enhanced adaptive evolution of sperm-expressed genes on the mammalian X chromosome.

Authors:  D G Torgerson; R S Singh
Journal:  Heredity (Edinb)       Date:  2006-01       Impact factor: 3.821

3.  A genomic comparison of faster-sex, faster-X, and faster-male evolution between Drosophila melanogaster and Drosophila pseudoobscura.

Authors:  Heidi Musters; Melanie A Huntley; Rama S Singh
Journal:  J Mol Evol       Date:  2006-04-11       Impact factor: 2.395

4.  Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome.

Authors:  Miguel Carneiro; Frank W Albert; José Melo-Ferreira; Nicolas Galtier; Philippe Gayral; Jose A Blanco-Aguiar; Rafael Villafuerte; Michael W Nachman; Nuno Ferrand
Journal:  Mol Biol Evol       Date:  2012-01-31       Impact factor: 16.240

5.  Effective population size and the Faster-X effect: empirical results and their interpretation.

Authors:  Judith E Mank; Beatriz Vicoso; Sofia Berlin; Brian Charlesworth
Journal:  Evolution       Date:  2009-09-30       Impact factor: 3.694

6.  Contrasting patterns of polymorphism and divergence on the Z chromosome and autosomes in two Ficedula flycatcher species.

Authors:  Thomas Borge; Matthew T Webster; Gunilla Andersson; Glenn-Peter Saetre
Journal:  Genetics       Date:  2005-06-14       Impact factor: 4.562

Review 7.  The genomic rate of adaptive evolution.

Authors:  Adam Eyre-Walker
Journal:  Trends Ecol Evol       Date:  2006-07-03       Impact factor: 17.712

8.  Inter- and intraspecific variation in Drosophila genes with sex-biased expression.

Authors:  Lena Müller; Sonja Grath; Korbinian von Heckel; John Parsch
Journal:  Int J Evol Biol       Date:  2012-01-12

9.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

10.  Rapid evolution of cancer/testis genes on the X chromosome.

Authors:  Brian J Stevenson; Christian Iseli; Sumir Panji; Monique Zahn-Zabal; Winston Hide; Lloyd J Old; Andrew J Simpson; C Victor Jongeneel
Journal:  BMC Genomics       Date:  2007-05-23       Impact factor: 3.969

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  88 in total

1.  Conservation of Regional Variation in Sex-Specific Sex Chromosome Regulation.

Authors:  Alison E Wright; Fabian Zimmer; Peter W Harrison; Judith E Mank
Journal:  Genetics       Date:  2015-08-05       Impact factor: 4.562

2.  Theodosius Dobzhansky on Hybrid Sterility and Speciation.

Authors:  Jerry A Coyne
Journal:  Genetics       Date:  2016-01       Impact factor: 4.562

3.  Purifying Selection Maintains Dosage-Sensitive Genes during Degeneration of the Threespine Stickleback Y Chromosome.

Authors:  Michael A White; Jun Kitano; Catherine L Peichel
Journal:  Mol Biol Evol       Date:  2015-03-26       Impact factor: 16.240

4.  Molecular Mechanisms and Evolutionary Processes Contributing to Accelerated Divergence of Gene Expression on the Drosophila X Chromosome.

Authors:  Joseph D Coolon; Kraig R Stevenson; C Joel McManus; Bing Yang; Brenton R Graveley; Patricia J Wittkopp
Journal:  Mol Biol Evol       Date:  2015-06-02       Impact factor: 16.240

5.  Extreme selective sweeps independently targeted the X chromosomes of the great apes.

Authors:  Kiwoong Nam; Kasper Munch; Asger Hobolth; Julien Yann Dutheil; Krishna R Veeramah; August E Woerner; Michael F Hammer; Thomas Mailund; Mikkel Heide Schierup
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-04       Impact factor: 11.205

6.  The Relative Contributions of the X Chromosome and Autosomes to Local Adaptation.

Authors:  Clémentine Lasne; Carla M Sgrò; Tim Connallon
Journal:  Genetics       Date:  2017-01-06       Impact factor: 4.562

7.  Local adaptation and the evolution of inversions on sex chromosomes and autosomes.

Authors:  Tim Connallon; Colin Olito; Ludovic Dutoit; Homa Papoli; Filip Ruzicka; Lengxob Yong
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-10-05       Impact factor: 6.237

8.  Evidence for increased levels of positive and negative selection on the X chromosome versus autosomes in humans.

Authors:  Krishna R Veeramah; Ryan N Gutenkunst; August E Woerner; Joseph C Watkins; Michael F Hammer
Journal:  Mol Biol Evol       Date:  2014-05-15       Impact factor: 16.240

Review 9.  Spermatogenesis and the Evolution of Mammalian Sex Chromosomes.

Authors:  Erica L Larson; Emily E K Kopania; Jeffrey M Good
Journal:  Trends Genet       Date:  2018-08-01       Impact factor: 11.639

10.  Fine-scale geographic patterns of gene flow and reproductive character displacement in Drosophila subquinaria and Drosophila recens.

Authors:  Kelly A Dyer; Emily R Bewick; Brooke E White; Michael J Bray; Devon P Humphreys
Journal:  Mol Ecol       Date:  2018-08-03       Impact factor: 6.185

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