Literature DB >> 23788733

Biosynthesis of antinutritional alkaloids in solanaceous crops is mediated by clustered genes.

M Itkin1, U Heinig, O Tzfadia, A J Bhide, B Shinde, P D Cardenas, S E Bocobza, T Unger, S Malitsky, R Finkers, Y Tikunov, A Bovy, Y Chikate, P Singh, I Rogachev, J Beekwilder, A P Giri, A Aharoni.   

Abstract

Steroidal glycoalkaloids (SGAs) such as α-solanine found in solanaceous food plants--as, for example, potato--are antinutritional factors for humans. Comparative coexpression analysis between tomato and potato coupled with chemical profiling revealed an array of 10 genes that partake in SGA biosynthesis. We discovered that six of them exist as a cluster on chromosome 7, whereas an additional two are adjacent in a duplicated genomic region on chromosome 12. Following systematic functional analysis, we suggest a revised SGA biosynthetic pathway starting from cholesterol up to the tetrasaccharide moiety linked to the tomato SGA aglycone. Silencing GLYCOALKALOID METABOLISM 4 prevented accumulation of SGAs in potato tubers and tomato fruit. This may provide a means for removal of unsafe, antinutritional substances present in these widely used food crops.

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Year:  2013        PMID: 23788733     DOI: 10.1126/science.1240230

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  148 in total

1.  A Revolution in Plant Metabolism: Genome-Enabled Pathway Discovery.

Authors:  Jeongwoon Kim; C Robin Buell
Journal:  Plant Physiol       Date:  2015-07-29       Impact factor: 8.340

2.  Efficient genome engineering using Platinum TALEN in potato.

Authors:  Shuhei Yasumoto; Naoyuki Umemoto; Hyoung Jae Lee; Masaru Nakayasu; Satoru Sawai; Tetsushi Sakuma; Takashi Yamamoto; Masaharu Mizutani; Kazuki Saito; Toshiya Muranaka
Journal:  Plant Biotechnol (Tokyo)       Date:  2019-09-25       Impact factor: 1.133

3.  Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots.

Authors:  Camilla Ferrari; Devendra Shivhare; Bjoern Oest Hansen; Asher Pasha; Eddi Esteban; Nicholas J Provart; Friedrich Kragler; Alisdair Fernie; Takayuki Tohge; Marek Mutwil
Journal:  Plant Cell       Date:  2020-01-27       Impact factor: 11.277

Review 4.  Mechanisms and ecological consequences of plant defence induction and suppression in herbivore communities.

Authors:  M R Kant; W Jonckheere; B Knegt; F Lemos; J Liu; B C J Schimmel; C A Villarroel; L M S Ataide; W Dermauw; J J Glas; M Egas; A Janssen; T Van Leeuwen; R C Schuurink; M W Sabelis; J M Alba
Journal:  Ann Bot       Date:  2015-06       Impact factor: 4.357

5.  Evolution of Lineage-Specific Gene Networks Underlying the Considerable Fruit Shape Diversity in Persimmon.

Authors:  Haruka Maeda; Takashi Akagi; Noriyuki Onoue; Atsushi Kono; Ryutaro Tao
Journal:  Plant Cell Physiol       Date:  2019-11-01       Impact factor: 4.927

6.  A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants.

Authors:  Jennifer H Wisecaver; Alexander T Borowsky; Vered Tzin; Georg Jander; Daniel J Kliebenstein; Antonis Rokas
Journal:  Plant Cell       Date:  2017-04-13       Impact factor: 11.277

Review 7.  Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites.

Authors:  Arvind K Chavali; Seung Y Rhee
Journal:  Brief Bioinform       Date:  2018-09-28       Impact factor: 11.622

8.  Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

Authors:  Virginie Garcia; Cécile Bres; Daniel Just; Lucie Fernandez; Fabienne Wong Jun Tai; Jean-Philippe Mauxion; Marie-Christine Le Paslier; Aurélie Bérard; Dominique Brunel; Koh Aoki; Saleh Alseekh; Alisdair R Fernie; Paul D Fraser; Christophe Rothan
Journal:  Nat Protoc       Date:  2016-11-03       Impact factor: 13.491

9.  Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.

Authors:  Pascal Schläpfer; Peifen Zhang; Chuan Wang; Taehyong Kim; Michael Banf; Lee Chae; Kate Dreher; Arvind K Chavali; Ricardo Nilo-Poyanco; Thomas Bernard; Daniel Kahn; Seung Y Rhee
Journal:  Plant Physiol       Date:  2017-02-22       Impact factor: 8.340

10.  FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants.

Authors:  Colin Ruprecht; Amelie Mendrinna; Takayuki Tohge; Arun Sampathkumar; Sebastian Klie; Alisdair R Fernie; Zoran Nikoloski; Staffan Persson; Marek Mutwil
Journal:  Plant Physiol       Date:  2016-01-11       Impact factor: 8.340

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